Strain Fitness in Pseudomonas sp. RS175 around PFR28_03483

Experiment: Cytidine carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine carbon 10 mM
4,014,559	+		PFR28_03482	0.47	+0.9
4,014,559	+		PFR28_03482	0.47	-0.1
4,014,559	+		PFR28_03482	0.47	-1.3
4,014,559	+		PFR28_03482	0.47	-1.8
4,014,559	+		PFR28_03482	0.47	-2.2
4,014,560	-		PFR28_03482	0.47	-1.9
4,014,560	-		PFR28_03482	0.47	-2.1
4,014,620	+		PFR28_03482	0.52	-0.1
4,014,621	-		PFR28_03482	0.52	-0.2
4,014,622	+		PFR28_03482	0.52	-1.0
4,014,622	+		PFR28_03482	0.52	-0.3
4,014,622	+		PFR28_03482	0.52	-0.5
4,014,623	-		PFR28_03482	0.52	-0.8
4,014,623	-		PFR28_03482	0.52	-0.2
4,014,623	-		PFR28_03482	0.52	-2.0
4,014,623	-		PFR28_03482	0.52	-1.6
4,014,623	-		PFR28_03482	0.52	-1.6
4,014,623	-		PFR28_03482	0.52	-0.1
4,014,623	-		PFR28_03482	0.52	-0.1
4,014,623	-		PFR28_03482	0.52	-1.4
4,014,623	-		PFR28_03482	0.52	+0.3
4,014,623	-		PFR28_03482	0.52	-2.4
4,014,623	-		PFR28_03482	0.52	+0.0
4,014,718	+		PFR28_03482	0.59	-0.6
4,014,718	+		PFR28_03482	0.59	+0.4
4,014,719	-		PFR28_03482	0.59	-2.8
4,014,719	-		PFR28_03482	0.59	-0.3
4,014,739	+		PFR28_03482	0.60	-0.8
4,014,739	+		PFR28_03482	0.60	-1.2
4,014,740	-		PFR28_03482	0.60	-1.9
4,014,740	-		PFR28_03482	0.60	-0.2
4,014,740	-		PFR28_03482	0.60	+0.3
4,014,740	-		PFR28_03482	0.60	+0.4
4,014,740	-		PFR28_03482	0.60	-0.7
4,014,950	-		PFR28_03482	0.76	-0.5
4,014,955	+		PFR28_03482	0.76	+0.1
4,015,037	-		PFR28_03482	0.82	+1.9
4,015,171	+				-0.9
4,015,172	-				-1.9
4,015,172	-				-2.3
4,015,172	-				-2.2
4,015,172	-				+0.5
4,015,181	+				-0.5
4,015,189	-				-0.2
4,015,189	-				-0.2
4,015,280	+				+0.9
4,015,280	+				+0.5
4,015,280	+				-1.9
4,015,280	+				-0.2
4,015,280	+				-1.0
4,015,281	-				-0.7
4,015,281	-				-0.4
4,015,281	-				+0.6
4,015,284	+				+1.6
4,015,284	+				-1.5
4,015,296	+				-0.4
4,015,297	-				+0.6
4,015,312	+				-0.7
4,015,313	-				+0.6
4,015,313	-				+0.4
4,015,326	+				+1.1
4,015,327	-				+0.9
4,015,327	-				+0.5
4,015,337	+				-2.2
4,015,337	+				+0.9
4,015,337	+				-0.9
4,015,337	+				-0.5
4,015,338	-				+0.0
4,015,338	-				+1.2
4,015,338	-				+0.1
4,015,340	+				-0.3
4,015,340	+				-0.8
4,015,341	-				+0.4
4,015,341	-				-1.3
4,015,341	-				+0.3
4,015,341	-				+0.1
4,015,341	-				+0.2
4,015,341	-				-0.3
4,015,341	-				-2.0
4,015,356	-				+0.7
4,015,356	-				-0.7
4,015,402	+				+0.8
4,015,402	+				+0.1
4,015,402	+				+0.2
4,015,402	+				+0.7
4,015,402	+				+1.6
4,015,402	+				-0.1
4,015,402	+				+0.5
4,015,402	+				-0.3
4,015,403	-				-0.2
4,015,403	-				+0.1
4,015,409	+				+0.5
4,015,428	+				+0.1
4,015,428	+				-0.7
4,015,428	+				+1.4
4,015,428	+				+1.3
4,015,428	+				-2.0
4,015,429	-				-0.8
4,015,429	-				-1.5
4,015,429	-				-1.2
4,015,441	-				-0.8
4,015,441	-				-2.9
4,015,441	-				-1.0
4,015,441	-				-2.5
4,015,441	-				-0.5
4,015,877	+		PFR28_03483	0.20	-1.1
4,015,878	-		PFR28_03483	0.20	-1.3
4,016,144	+		PFR28_03483	0.31	-0.3
4,016,144	+		PFR28_03483	0.31	+0.0
4,016,144	+		PFR28_03483	0.31	-0.1
4,016,144	+		PFR28_03483	0.31	-0.8
4,016,144	+		PFR28_03483	0.31	-0.6
4,016,144	+		PFR28_03483	0.31	-1.2
4,016,144	+		PFR28_03483	0.31	-0.1
4,016,144	+		PFR28_03483	0.31	-0.4
4,016,144	+		PFR28_03483	0.31	-0.0
4,016,144	+		PFR28_03483	0.31	+1.2
4,016,144	+		PFR28_03483	0.31	-1.8
4,016,144	+		PFR28_03483	0.31	-1.9
4,016,144	+		PFR28_03483	0.31	-0.2
4,016,144	+		PFR28_03483	0.31	-1.8
4,016,144	+		PFR28_03483	0.31	-0.0
4,016,144	+		PFR28_03483	0.31	-0.4
4,016,144	+		PFR28_03483	0.31	-0.8
4,016,144	+		PFR28_03483	0.31	-0.3
4,016,145	-		PFR28_03483	0.31	-2.5
4,016,145	-		PFR28_03483	0.31	-1.4
4,016,145	-		PFR28_03483	0.31	-1.9
4,016,145	-		PFR28_03483	0.31	-1.0
4,016,145	-		PFR28_03483	0.31	-0.1
4,016,145	-		PFR28_03483	0.31	-0.9
4,016,145	-		PFR28_03483	0.31	-0.7
4,016,145	-		PFR28_03483	0.31	+0.2
4,016,145	-		PFR28_03483	0.31	-0.9
4,016,145	-		PFR28_03483	0.31	+0.0
4,016,145	-		PFR28_03483	0.31	-0.7
4,016,145	-		PFR28_03483	0.31	-2.0
4,016,145	-		PFR28_03483	0.31	-0.2
4,016,145	-		PFR28_03483	0.31	-0.5
4,016,145	-		PFR28_03483	0.31	-2.1
4,016,561	+		PFR28_03483	0.48	-0.4
4,016,561	+		PFR28_03483	0.48	-0.9
4,016,561	+		PFR28_03483	0.48	-1.7
4,016,561	+		PFR28_03483	0.48	-0.1
4,016,562	-		PFR28_03483	0.48	+0.6
4,016,562	-		PFR28_03483	0.48	-2.3
4,016,562	-		PFR28_03483	0.48	-0.9
4,016,562	-		PFR28_03483	0.48	-0.5
4,016,562	-		PFR28_03483	0.48	-0.5
4,016,659	+		PFR28_03483	0.52	-0.8
4,016,659	+		PFR28_03483	0.52	-0.7
4,016,660	-		PFR28_03483	0.52	-2.3
4,016,786	+		PFR28_03483	0.57	-0.5
4,016,787	-		PFR28_03483	0.58	-0.4
4,016,840	+		PFR28_03483	0.60	-0.2
4,016,840	+		PFR28_03483	0.60	-0.2
4,016,840	+		PFR28_03483	0.60	-0.9
4,016,840	+		PFR28_03483	0.60	-1.8
4,016,840	+		PFR28_03483	0.60	-1.4
4,016,840	+		PFR28_03483	0.60	-1.0
4,016,840	+		PFR28_03483	0.60	-1.3
4,016,840	+		PFR28_03483	0.60	-0.7
4,016,841	-		PFR28_03483	0.60	-0.8
4,016,841	-		PFR28_03483	0.60	-0.3
4,016,841	-		PFR28_03483	0.60	-1.1
4,016,841	-		PFR28_03483	0.60	+0.2
4,016,841	-		PFR28_03483	0.60	-2.8
4,016,841	-		PFR28_03483	0.60	+0.2
4,016,841	-		PFR28_03483	0.60	-0.8
4,016,897	+		PFR28_03483	0.62	-1.6
4,016,928	-		PFR28_03483	0.63	-1.0
4,017,029	+		PFR28_03483	0.68	-0.1
4,017,029	+		PFR28_03483	0.68	-0.7
4,017,029	+		PFR28_03483	0.68	-0.7
4,017,293	+		PFR28_03483	0.79	+0.8
4,017,293	+		PFR28_03483	0.79	-1.2
4,017,293	+		PFR28_03483	0.79	-0.1
4,017,293	+		PFR28_03483	0.79	-0.9
4,017,293	+		PFR28_03483	0.79	-0.2
4,017,293	+		PFR28_03483	0.79	-0.2
4,017,293	+		PFR28_03483	0.79	-0.8
4,017,293	+		PFR28_03483	0.79	-0.7
4,017,293	+		PFR28_03483	0.79	-0.9
4,017,293	+		PFR28_03483	0.79	-0.0
4,017,294	-		PFR28_03483	0.79	-0.6
4,017,294	-		PFR28_03483	0.79	-0.9
4,017,294	-		PFR28_03483	0.79	+2.8
4,017,294	-		PFR28_03483	0.79	-1.2
4,017,294	-		PFR28_03483	0.79	-0.9
4,017,294	-		PFR28_03483	0.79	-3.0
4,017,294	-		PFR28_03483	0.79	+0.1
4,017,294	-		PFR28_03483	0.79	-1.0
4,017,294	-		PFR28_03483	0.79	-1.2
4,017,294	-		PFR28_03483	0.79	-0.5
4,017,294	-		PFR28_03483	0.79	-1.5
4,017,294	-		PFR28_03483	0.79	+0.1
4,017,294	-		PFR28_03483	0.79	-0.1
4,017,458	+		PFR28_03483	0.85	+0.7
4,017,459	-		PFR28_03483	0.85	-1.6
4,017,459	-		PFR28_03483	0.85	-1.4
4,017,459	-		PFR28_03483	0.85	-2.6
4,017,473	+		PFR28_03483	0.86	-0.8
4,017,474	-		PFR28_03483	0.86	-0.6
4,017,474	-		PFR28_03483	0.86	+0.1
4,017,689	+				+1.0
4,017,689	+				+0.0
4,017,813	+				+0.6
4,017,813	+				-0.2
4,017,813	+				-1.1
4,017,813	+				-1.1
4,017,813	+				-2.2
4,017,813	+				-0.1
4,017,813	+				+0.2
4,017,813	+				-0.8
4,017,814	-				-1.6
4,017,814	-				-0.2
4,017,814	-				-1.4
4,017,814	-				-0.2
4,017,814	-				-0.9
4,017,814	-				-1.4
4,017,814	-				-3.0
4,017,992	-				-0.5
4,018,048	+		PFR28_03484	0.13	-0.3
4,018,049	-		PFR28_03484	0.13	-1.8
4,018,049	-		PFR28_03484	0.13	-0.8
4,018,152	+		PFR28_03484	0.19	-0.8
4,018,168	+		PFR28_03484	0.19	-0.8
4,018,169	-		PFR28_03484	0.19	+0.1
4,018,381	+		PFR28_03484	0.31	-3.6
4,018,381	+		PFR28_03484	0.31	-1.2
4,018,382	-		PFR28_03484	0.31	-0.6
4,018,382	-		PFR28_03484	0.31	-0.7
4,018,382	-		PFR28_03484	0.31	-0.1