Strain Fitness in Pseudomonas sp. RS175 around PFR28_02821

Experiment: Cytidine carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine carbon 10 mM
3,294,780	+		PFR28_02820	0.57	+0.8
3,294,781	-		PFR28_02820	0.57	+0.1
3,294,781	-		PFR28_02820	0.57	+0.3
3,294,781	-		PFR28_02820	0.57	-0.2
3,294,781	-		PFR28_02820	0.57	-3.4
3,294,873	+		PFR28_02820	0.65	-0.7
3,294,873	+		PFR28_02820	0.65	-0.4
3,294,873	+		PFR28_02820	0.65	-0.4
3,294,873	+		PFR28_02820	0.65	+1.4
3,294,873	+		PFR28_02820	0.65	-1.5
3,294,873	+		PFR28_02820	0.65	-2.3
3,294,873	+		PFR28_02820	0.65	+0.1
3,294,873	+		PFR28_02820	0.65	-0.1
3,294,873	+		PFR28_02820	0.65	+0.8
3,294,873	+		PFR28_02820	0.65	-0.4
3,294,873	+		PFR28_02820	0.65	-0.4
3,294,874	-		PFR28_02820	0.65	-1.3
3,294,874	-		PFR28_02820	0.65	-0.2
3,294,874	-		PFR28_02820	0.65	+0.6
3,294,874	-		PFR28_02820	0.65	-0.5
3,294,874	-		PFR28_02820	0.65	-0.6
3,294,874	-		PFR28_02820	0.65	+0.3
3,295,032	+		PFR28_02820	0.79	-1.3
3,295,033	-		PFR28_02820	0.79	-0.1
3,295,090	-		PFR28_02820	0.85	-1.7
3,295,250	+				-0.1
3,295,251	-				-1.2
3,295,251	-				-0.9
3,295,268	+				-0.0
3,295,268	+				-1.0
3,295,268	+				+0.2
3,295,268	+				-0.6
3,295,268	+				-0.7
3,295,268	+				+0.8
3,295,268	+				+1.2
3,295,268	+				+0.1
3,295,268	+				+0.0
3,295,268	+				+0.4
3,295,268	+				-0.3
3,295,268	+				-0.4
3,295,269	-				-0.5
3,295,269	-				+0.3
3,295,269	-				-2.5
3,295,269	-				-0.1
3,295,269	-				-0.6
3,295,269	-				+0.4
3,295,269	-				-0.4
3,295,269	-				-0.3
3,295,269	-				+0.7
3,295,269	-				+0.3
3,295,269	-				-2.4
3,295,269	-				-0.4
3,295,274	+				-0.6
3,295,274	+				-0.8
3,295,274	+				-1.8
3,295,275	-				-0.9
3,295,275	-				-1.9
3,295,275	-				+0.0
3,295,275	-				-0.5
3,295,275	-				-0.1
3,295,275	-				+0.3
3,295,275	-				+0.4
3,295,275	-				-1.5
3,295,275	-				+1.6
3,295,276	+				+1.2
3,295,276	+				-2.1
3,295,276	+				-0.8
3,295,276	+				-0.3
3,295,277	-				+0.3
3,295,375	+				-2.7
3,295,375	+				-0.0
3,295,375	+				-0.0
3,295,375	+				-1.0
3,295,569	+		PFR28_02821	0.23	-2.9
3,295,569	+		PFR28_02821	0.23	-1.4
3,295,569	+		PFR28_02821	0.23	-0.4
3,295,569	+		PFR28_02821	0.23	+0.6
3,295,570	-		PFR28_02821	0.23	-0.0
3,295,570	-		PFR28_02821	0.23	-3.5
3,295,570	-		PFR28_02821	0.23	-1.7
3,295,570	-		PFR28_02821	0.23	-3.8
3,295,570	-		PFR28_02821	0.23	-3.5
3,295,570	-		PFR28_02821	0.23	-4.0
3,295,570	-		PFR28_02821	0.23	-2.0
3,295,570	-		PFR28_02821	0.23	-2.7
3,295,570	-		PFR28_02821	0.23	-3.9
3,295,666	+		PFR28_02821	0.32	-2.1
3,295,666	+		PFR28_02821	0.32	-1.3
3,295,666	+		PFR28_02821	0.32	-3.1
3,295,666	+		PFR28_02821	0.32	-2.8
3,295,667	-		PFR28_02821	0.32	+0.3
3,295,667	-		PFR28_02821	0.32	-2.3
3,295,667	-		PFR28_02821	0.32	-1.7
3,295,667	-		PFR28_02821	0.32	-3.0
3,295,667	-		PFR28_02821	0.32	-3.5
3,295,734	+		PFR28_02821	0.39	-2.6
3,295,734	+		PFR28_02821	0.39	-2.3
3,295,734	+		PFR28_02821	0.39	-3.1
3,295,734	+		PFR28_02821	0.39	-2.1
3,295,734	+		PFR28_02821	0.39	-0.6
3,295,734	+		PFR28_02821	0.39	-2.7
3,295,734	+		PFR28_02821	0.39	-2.1
3,295,734	+		PFR28_02821	0.39	-3.3
3,295,734	+		PFR28_02821	0.39	-3.7
3,295,734	+		PFR28_02821	0.39	-3.1
3,295,734	+		PFR28_02821	0.39	-3.4
3,295,734	+		PFR28_02821	0.39	-3.4
3,295,734	+		PFR28_02821	0.39	-2.3
3,295,734	+		PFR28_02821	0.39	-0.4
3,295,734	+		PFR28_02821	0.39	-3.6
3,295,734	+		PFR28_02821	0.39	-1.3
3,295,734	+		PFR28_02821	0.39	-1.4
3,295,734	+		PFR28_02821	0.39	-3.1
3,295,734	+		PFR28_02821	0.39	-1.6
3,295,734	+		PFR28_02821	0.39	-2.4
3,295,734	+		PFR28_02821	0.39	-0.4
3,295,734	+		PFR28_02821	0.39	-1.6
3,295,735	-		PFR28_02821	0.39	-1.9
3,295,735	-		PFR28_02821	0.39	-3.5
3,295,735	-		PFR28_02821	0.39	-1.2
3,295,735	-		PFR28_02821	0.39	-3.4
3,295,735	-		PFR28_02821	0.39	-3.7
3,295,735	-		PFR28_02821	0.39	-2.7
3,295,735	-		PFR28_02821	0.39	-3.0
3,295,735	-		PFR28_02821	0.39	-4.3
3,295,735	-		PFR28_02821	0.39	-1.5
3,295,735	-		PFR28_02821	0.39	-3.5
3,295,735	-		PFR28_02821	0.39	-2.1
3,295,735	-		PFR28_02821	0.39	-2.9
3,295,735	-		PFR28_02821	0.39	-2.5
3,295,735	-		PFR28_02821	0.39	-3.1
3,295,735	-		PFR28_02821	0.39	-2.4
3,295,738	+		PFR28_02821	0.39	-2.8
3,295,738	+		PFR28_02821	0.39	-2.8
3,295,738	+		PFR28_02821	0.39	-1.9
3,295,738	+		PFR28_02821	0.39	-3.7
3,295,738	+		PFR28_02821	0.39	-3.1
3,295,738	+		PFR28_02821	0.39	-3.8
3,295,738	+		PFR28_02821	0.39	-3.2
3,295,738	+		PFR28_02821	0.39	-1.4
3,295,739	-		PFR28_02821	0.39	-2.4
3,295,739	-		PFR28_02821	0.39	+0.2
3,295,739	-		PFR28_02821	0.39	-2.1
3,295,739	-		PFR28_02821	0.39	-2.7
3,295,739	-		PFR28_02821	0.39	-3.2
3,295,739	-		PFR28_02821	0.39	-1.3
3,295,739	-		PFR28_02821	0.39	-2.2
3,295,739	-		PFR28_02821	0.39	-2.1
3,295,739	-		PFR28_02821	0.39	-2.1
3,295,739	-		PFR28_02821	0.39	-2.9
3,295,739	-		PFR28_02821	0.39	-3.3
3,295,739	-		PFR28_02821	0.39	-2.3
3,295,739	-		PFR28_02821	0.39	-3.5
3,295,782	-		PFR28_02821	0.43	-1.9
3,295,909	-		PFR28_02821	0.55	-0.2
3,295,909	-		PFR28_02821	0.55	-4.5
3,295,923	+		PFR28_02821	0.56	-4.0
3,295,923	+		PFR28_02821	0.56	-2.5
3,295,923	+		PFR28_02821	0.56	-1.4
3,295,924	-		PFR28_02821	0.56	-2.8
3,295,924	-		PFR28_02821	0.56	-4.1
3,295,977	+		PFR28_02821	0.61	-2.8
3,295,977	+		PFR28_02821	0.61	-2.3
3,295,977	+		PFR28_02821	0.61	-0.0
3,295,977	+		PFR28_02821	0.61	-2.4
3,295,978	-		PFR28_02821	0.61	-2.0
3,295,978	-		PFR28_02821	0.61	-1.3
3,295,978	-		PFR28_02821	0.61	-2.0
3,295,978	-		PFR28_02821	0.61	-1.9
3,295,978	-		PFR28_02821	0.61	-3.3
3,295,981	+		PFR28_02821	0.61	-3.0
3,295,982	-		PFR28_02821	0.61	-3.8
3,295,982	-		PFR28_02821	0.61	-3.0
3,295,982	-		PFR28_02821	0.61	-1.8
3,296,304	+				-2.3
3,296,304	+				-1.6
3,296,304	+				-2.6
3,296,305	-				-2.4
3,296,400	+				-1.0
3,296,400	+				-0.6
3,296,400	+				-2.8
3,296,400	+				-2.2
3,296,400	+				-2.9
3,296,400	+				-1.7
3,296,401	-				+0.2
3,296,401	-				+0.7
3,296,401	-				-0.4
3,296,401	-				-0.2
3,296,476	+				+0.8
3,296,476	+				-0.4
3,296,476	+				+0.6
3,296,476	+				-0.1
3,296,476	+				-0.9
3,296,476	+				-1.4
3,296,476	+				-0.6
3,296,476	+				+0.1
3,296,476	+				-1.7
3,296,476	+				+1.6
3,296,476	+				-0.5
3,296,476	+				-0.0
3,296,477	-				-0.3
3,296,477	-				+1.8
3,296,477	-				-1.0
3,296,477	-				+0.1
3,296,477	-				-0.3
3,296,477	-				+0.9
3,296,477	-				-0.3
3,296,477	-				+0.9
3,296,484	+				-1.8
3,296,516	+				+0.1
3,296,517	-				+0.2
3,296,517	-				-0.4
3,296,558	-		PFR28_02822	0.14	-0.4
3,296,741	+		PFR28_02822	0.38	+0.7
3,296,741	+		PFR28_02822	0.38	-0.3
3,296,741	+		PFR28_02822	0.38	-0.4
3,296,741	+		PFR28_02822	0.38	-3.1
3,296,741	+		PFR28_02822	0.38	+0.0
3,296,741	+		PFR28_02822	0.38	-1.3
3,296,742	-		PFR28_02822	0.38	-0.1
3,296,742	-		PFR28_02822	0.38	+0.0
3,296,742	-		PFR28_02822	0.38	+0.9
3,296,742	-		PFR28_02822	0.38	-1.0
3,296,937	+		PFR28_02822	0.63	+0.2
3,296,995	+		PFR28_02822	0.71	-0.3
3,296,995	+		PFR28_02822	0.71	+0.0
3,296,995	+		PFR28_02822	0.71	-0.3
3,296,995	+		PFR28_02822	0.71	-0.1
3,296,996	-		PFR28_02822	0.71	+1.4
3,297,002	+		PFR28_02822	0.72	+0.6
3,297,002	+		PFR28_02822	0.72	+0.2
3,297,003	-		PFR28_02822	0.72	+0.3
3,297,003	-		PFR28_02822	0.72	-0.1
3,297,003	-		PFR28_02822	0.72	-0.0
3,297,003	-		PFR28_02822	0.72	-0.3
3,297,110	-		PFR28_02822	0.86	-2.2
3,297,156	-				-0.1
3,297,156	-				+0.8
3,297,187	+				-0.5
3,297,187	+				+1.3
3,297,188	-				-0.6
3,297,188	-				-0.4
3,297,227	+				+0.4
3,297,227	+				+0.2
3,297,227	+				-3.1
3,297,228	-				+0.3
3,297,228	-				-0.7
3,297,288	+				+1.2
3,297,288	+				+1.4
3,297,288	+				+0.3
3,297,289	-				-0.9
3,297,289	-				-1.0
3,297,289	-				-0.4
3,297,289	-				-0.8
3,297,289	-				-0.5