Strain Fitness in Pseudomonas sp. RS175 around PFR28_01021

Experiment: Cytidine carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine carbon 10 mM
1,105,659	-				-0.5
1,105,659	-				+0.7
1,105,860	+				-0.6
1,105,860	+				+0.3
1,105,860	+				+0.1
1,105,889	+				-1.8
1,105,889	+				-1.2
1,105,890	-				-0.6
1,105,890	-				+0.0
1,105,890	-				-2.1
1,105,890	-				-0.8
1,105,890	-				+0.5
1,105,890	-				-1.6
1,106,145	+		PFR28_01020	0.39	+0.2
1,106,145	+		PFR28_01020	0.39	-1.1
1,106,146	-		PFR28_01020	0.39	-0.0
1,106,274	+		PFR28_01020	0.59	+1.7
1,106,275	-		PFR28_01020	0.59	-0.2
1,106,331	-		PFR28_01020	0.68	+0.4
1,106,331	-		PFR28_01020	0.68	+0.6
1,106,334	+		PFR28_01020	0.69	+0.1
1,106,334	+		PFR28_01020	0.69	-0.9
1,106,335	-		PFR28_01020	0.69	-0.1
1,106,335	-		PFR28_01020	0.69	-1.0
1,106,335	-		PFR28_01020	0.69	-0.0
1,106,335	-		PFR28_01020	0.69	-1.0
1,106,382	+		PFR28_01020	0.77	-0.8
1,106,382	+		PFR28_01020	0.77	-0.2
1,106,382	+		PFR28_01020	0.77	-0.8
1,106,383	-		PFR28_01020	0.77	-0.9
1,106,383	-		PFR28_01020	0.77	+0.3
1,106,383	-		PFR28_01020	0.77	-1.2
1,106,384	+		PFR28_01020	0.77	+1.7
1,106,384	+		PFR28_01020	0.77	+0.5
1,106,385	-		PFR28_01020	0.77	-0.6
1,106,385	-		PFR28_01020	0.77	+0.7
1,106,584	-				+0.1
1,106,594	+				+0.5
1,106,594	+				+0.3
1,106,594	+				-0.8
1,106,594	+				-0.8
1,106,594	+				-0.5
1,106,594	+				-0.1
1,106,594	+				-0.8
1,106,594	+				-0.3
1,106,595	-				+1.4
1,106,595	-				+1.8
1,106,595	-				+1.0
1,106,601	+				-1.5
1,106,601	+				-0.8
1,106,602	-				+1.0
1,106,602	-				-0.5
1,106,602	-				+1.5
1,106,602	-				+1.2
1,106,602	-				+1.3
1,106,657	+				+0.5
1,106,657	+				+1.8
1,106,658	-				+1.9
1,106,740	+		PFR28_01021	0.17	+1.1
1,106,740	+		PFR28_01021	0.17	+2.1
1,106,741	-		PFR28_01021	0.17	+1.1
1,106,741	-		PFR28_01021	0.17	+1.7
1,106,741	-		PFR28_01021	0.17	+1.5
1,106,741	-		PFR28_01021	0.17	+1.4
1,106,741	-		PFR28_01021	0.17	+1.0
1,106,743	-		PFR28_01021	0.17	+1.1
1,106,841	+		PFR28_01021	0.29	+1.9
1,106,841	+		PFR28_01021	0.29	+2.0
1,106,841	+		PFR28_01021	0.29	+0.5
1,106,842	-		PFR28_01021	0.29	+2.5
1,106,842	-		PFR28_01021	0.29	+1.9
1,106,842	-		PFR28_01021	0.29	+0.2
1,106,938	-		PFR28_01021	0.41	+1.9
1,106,938	-		PFR28_01021	0.41	+1.7
1,107,010	+		PFR28_01021	0.50	+1.5
1,107,010	+		PFR28_01021	0.50	+1.0
1,107,010	+		PFR28_01021	0.50	+1.5
1,107,010	+		PFR28_01021	0.50	+1.8
1,107,011	-		PFR28_01021	0.50	+1.0
1,107,061	+		PFR28_01021	0.56	+2.1
1,107,061	+		PFR28_01021	0.56	+1.4
1,107,062	-		PFR28_01021	0.56	+2.0
1,107,062	-		PFR28_01021	0.56	+1.7
1,107,109	+		PFR28_01021	0.62	+1.8
1,107,109	+		PFR28_01021	0.62	+1.5
1,107,110	-		PFR28_01021	0.62	+1.7
1,107,110	-		PFR28_01021	0.62	+1.8
1,107,110	-		PFR28_01021	0.62	+1.8
1,107,110	-		PFR28_01021	0.62	+2.0
1,107,110	-		PFR28_01021	0.62	+2.9
1,107,110	-		PFR28_01021	0.62	+0.4
1,107,110	-		PFR28_01021	0.62	+1.1
1,107,127	+		PFR28_01021	0.64	+1.8
1,107,127	+		PFR28_01021	0.64	+2.4
1,107,127	+		PFR28_01021	0.64	+1.7
1,107,127	+		PFR28_01021	0.64	+1.7
1,107,127	+		PFR28_01021	0.64	+1.9
1,107,127	+		PFR28_01021	0.64	+0.9
1,107,127	+		PFR28_01021	0.64	+3.3
1,107,128	-		PFR28_01021	0.64	+1.4
1,107,128	-		PFR28_01021	0.64	+1.3
1,107,128	-		PFR28_01021	0.64	+1.6
1,107,128	-		PFR28_01021	0.64	+1.6
1,107,128	-		PFR28_01021	0.64	+1.9
1,107,128	-		PFR28_01021	0.64	+1.7
1,107,128	-		PFR28_01021	0.64	+2.0
1,107,196	+		PFR28_01021	0.73	+1.8
1,107,196	+		PFR28_01021	0.73	+1.6
1,107,197	-		PFR28_01021	0.73	+1.4
1,107,208	+		PFR28_01021	0.74	+2.1
1,107,208	+		PFR28_01021	0.74	+1.9
1,107,208	+		PFR28_01021	0.74	+1.3
1,107,208	+		PFR28_01021	0.74	+3.0
1,107,208	+		PFR28_01021	0.74	+2.1
1,107,208	+		PFR28_01021	0.74	+2.0
1,107,208	+		PFR28_01021	0.74	+2.1
1,107,208	+		PFR28_01021	0.74	+2.2
1,107,208	+		PFR28_01021	0.74	+1.7
1,107,208	+		PFR28_01021	0.74	+0.9
1,107,208	+		PFR28_01021	0.74	+1.8
1,107,208	+		PFR28_01021	0.74	+1.8
1,107,208	+		PFR28_01021	0.74	+0.8
1,107,208	+		PFR28_01021	0.74	+1.1
1,107,208	+		PFR28_01021	0.74	+1.6
1,107,208	+		PFR28_01021	0.74	+1.7
1,107,209	-		PFR28_01021	0.74	+1.9
1,107,209	-		PFR28_01021	0.74	+1.7
1,107,209	-		PFR28_01021	0.74	+0.7
1,107,209	-		PFR28_01021	0.74	+1.1
1,107,209	-		PFR28_01021	0.74	+1.4
1,107,209	-		PFR28_01021	0.74	+1.1
1,107,209	-		PFR28_01021	0.74	+1.1
1,107,209	-		PFR28_01021	0.74	+1.5
1,107,209	-		PFR28_01021	0.74	+0.5
1,107,209	-		PFR28_01021	0.74	+1.7
1,107,271	+		PFR28_01021	0.82	+1.9
1,107,271	+		PFR28_01021	0.82	+1.7
1,107,271	+		PFR28_01021	0.82	+1.6
1,107,271	+		PFR28_01021	0.82	+1.3
1,107,272	-		PFR28_01021	0.82	+2.0
1,107,272	-		PFR28_01021	0.82	+1.4
1,107,272	-		PFR28_01021	0.82	+1.1
1,107,272	-		PFR28_01021	0.82	+1.8
1,107,272	-		PFR28_01021	0.82	+1.4
1,107,272	-		PFR28_01021	0.82	+1.8
1,107,272	-		PFR28_01021	0.82	+1.2
1,107,272	-		PFR28_01021	0.82	+1.4
1,107,272	-		PFR28_01021	0.82	-1.0
1,107,272	-		PFR28_01021	0.82	+1.5
1,107,280	+		PFR28_01021	0.83	+2.0
1,107,281	-		PFR28_01021	0.83	+1.0
1,107,281	-		PFR28_01021	0.83	+0.4
1,107,332	+		PFR28_01021	0.89	+2.1
1,107,382	+				-0.9
1,107,427	-				-0.1
1,107,461	+				+0.0
1,107,462	-				+0.5
1,107,471	+				-0.2
1,107,472	-				-0.6
1,107,688	+		PFR28_01022	0.20	-0.0
1,107,802	+		PFR28_01022	0.31	+0.5
1,107,802	+		PFR28_01022	0.31	+1.2
1,107,802	+		PFR28_01022	0.31	-0.9
1,107,803	-		PFR28_01022	0.31	+0.6
1,107,803	-		PFR28_01022	0.31	+1.1
1,107,944	-		PFR28_01022	0.45	-0.6
1,107,944	-		PFR28_01022	0.45	-0.0
1,107,944	-		PFR28_01022	0.45	+0.1
1,108,094	-		PFR28_01022	0.60	-0.2
1,108,177	+		PFR28_01022	0.68	+0.3
1,108,178	-		PFR28_01022	0.68	-0.6
1,108,178	-		PFR28_01022	0.68	+0.9
1,108,178	-		PFR28_01022	0.68	-0.8
1,108,210	+		PFR28_01022	0.71	-0.7
1,108,210	+		PFR28_01022	0.71	+0.3
1,108,210	+		PFR28_01022	0.71	-0.8
1,108,210	+		PFR28_01022	0.71	+0.4
1,108,210	+		PFR28_01022	0.71	+0.0
1,108,211	-		PFR28_01022	0.71	+0.0
1,108,211	-		PFR28_01022	0.71	+0.8
1,108,211	-		PFR28_01022	0.71	-0.4
1,108,211	-		PFR28_01022	0.71	+0.4
1,108,211	-		PFR28_01022	0.71	-0.2
1,108,211	-		PFR28_01022	0.71	-0.3
1,108,211	-		PFR28_01022	0.71	-1.2
1,108,211	-		PFR28_01022	0.71	-0.9
1,108,225	+		PFR28_01022	0.73	-0.2
1,108,225	+		PFR28_01022	0.73	-2.2
1,108,225	+		PFR28_01022	0.73	+1.4
1,108,225	+		PFR28_01022	0.73	+0.0
1,108,225	+		PFR28_01022	0.73	+1.5
1,108,225	+		PFR28_01022	0.73	-0.5
1,108,225	+		PFR28_01022	0.73	-1.2
1,108,225	+		PFR28_01022	0.73	-2.0
1,108,226	-		PFR28_01022	0.73	-1.4
1,108,226	-		PFR28_01022	0.73	-0.0
1,108,226	-		PFR28_01022	0.73	+0.3
1,108,226	-		PFR28_01022	0.73	+0.5
1,108,226	-		PFR28_01022	0.73	-2.5
1,108,312	+		PFR28_01022	0.81	-0.4
1,108,312	+		PFR28_01022	0.81	+0.5
1,108,312	+		PFR28_01022	0.81	+1.2
1,108,312	+		PFR28_01022	0.81	+0.7
1,108,312	+		PFR28_01022	0.81	+1.2
1,108,312	+		PFR28_01022	0.81	+0.1
1,108,313	-		PFR28_01022	0.81	+0.1
1,108,313	-		PFR28_01022	0.81	+0.3
1,108,313	-		PFR28_01022	0.81	-0.2
1,108,313	-		PFR28_01022	0.81	-0.6
1,108,313	-		PFR28_01022	0.81	+1.0