Strain Fitness in Pseudomonas sp. RS175 around PFR28_00535

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00533 and PFR28_00534 overlap by 4 nucleotidesPFR28_00534 and PFR28_00535 are separated by 24 nucleotidesPFR28_00535 and PFR28_00536 are separated by 330 nucleotides PFR28_00533: PFR28_00533 - hypothetical protein, at 567,437 to 568,195 _00533 PFR28_00534: PFR28_00534 - hypothetical protein, at 568,192 to 569,061 _00534 PFR28_00535: PFR28_00535 - hypothetical protein, at 569,086 to 569,391 _00535 PFR28_00536: PFR28_00536 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 569,722 to 570,423 _00536 Position (kb) 569 570Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 568.086 kb on + strand, within PFR28_00533at 568.086 kb on + strand, within PFR28_00533at 568.328 kb on + strand, within PFR28_00534at 568.329 kb on - strand, within PFR28_00534at 568.372 kb on + strand, within PFR28_00534at 568.372 kb on + strand, within PFR28_00534at 568.372 kb on + strand, within PFR28_00534at 568.372 kb on + strand, within PFR28_00534at 568.372 kb on + strand, within PFR28_00534at 568.373 kb on - strand, within PFR28_00534at 568.373 kb on - strand, within PFR28_00534at 568.373 kb on - strand, within PFR28_00534at 568.373 kb on - strand, within PFR28_00534at 568.464 kb on - strand, within PFR28_00534at 568.503 kb on - strand, within PFR28_00534at 568.503 kb on - strand, within PFR28_00534at 568.503 kb on - strand, within PFR28_00534at 568.601 kb on + strand, within PFR28_00534at 568.601 kb on + strand, within PFR28_00534at 568.601 kb on + strand, within PFR28_00534at 568.601 kb on + strand, within PFR28_00534at 568.601 kb on + strand, within PFR28_00534at 568.601 kb on + strand, within PFR28_00534at 568.602 kb on - strand, within PFR28_00534at 568.602 kb on - strand, within PFR28_00534at 568.622 kb on - strand, within PFR28_00534at 568.622 kb on - strand, within PFR28_00534at 568.695 kb on - strand, within PFR28_00534at 568.925 kb on + strand, within PFR28_00534at 568.925 kb on + strand, within PFR28_00534at 568.925 kb on + strand, within PFR28_00534at 568.925 kb on + strand, within PFR28_00534at 568.925 kb on + strand, within PFR28_00534at 568.925 kb on + strand, within PFR28_00534at 568.925 kb on + strand, within PFR28_00534at 568.926 kb on - strand, within PFR28_00534at 568.926 kb on - strand, within PFR28_00534at 568.926 kb on - strand, within PFR28_00534at 568.926 kb on - strand, within PFR28_00534at 568.926 kb on - strand, within PFR28_00534at 569.166 kb on + strand, within PFR28_00535at 569.195 kb on + strand, within PFR28_00535at 569.196 kb on - strand, within PFR28_00535at 569.447 kb on + strandat 569.447 kb on + strandat 569.447 kb on + strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.448 kb on - strandat 569.472 kb on - strandat 569.487 kb on + strandat 569.620 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.641 kb on + strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.642 kb on - strandat 569.735 kb on + strandat 569.735 kb on + strandat 569.736 kb on - strandat 569.736 kb on - strandat 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.813 kb on + strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 569.814 kb on - strand, within PFR28_00536at 570.043 kb on - strand, within PFR28_00536at 570.245 kb on + strand, within PFR28_00536

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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568,086 + PFR28_00533 0.86 -0.2
568,086 + PFR28_00533 0.86 -0.4
568,328 + PFR28_00534 0.16 +1.1
568,329 - PFR28_00534 0.16 -1.3
568,372 + PFR28_00534 0.21 +1.5
568,372 + PFR28_00534 0.21 +0.1
568,372 + PFR28_00534 0.21 +0.1
568,372 + PFR28_00534 0.21 -0.6
568,372 + PFR28_00534 0.21 -0.7
568,373 - PFR28_00534 0.21 +0.6
568,373 - PFR28_00534 0.21 +0.2
568,373 - PFR28_00534 0.21 +1.1
568,373 - PFR28_00534 0.21 -0.8
568,464 - PFR28_00534 0.31 -0.5
568,503 - PFR28_00534 0.36 +0.6
568,503 - PFR28_00534 0.36 +0.2
568,503 - PFR28_00534 0.36 -1.3
568,601 + PFR28_00534 0.47 +0.3
568,601 + PFR28_00534 0.47 -0.9
568,601 + PFR28_00534 0.47 -0.2
568,601 + PFR28_00534 0.47 -1.0
568,601 + PFR28_00534 0.47 -1.0
568,601 + PFR28_00534 0.47 +0.4
568,602 - PFR28_00534 0.47 +0.9
568,602 - PFR28_00534 0.47 +0.7
568,622 - PFR28_00534 0.49 +0.2
568,622 - PFR28_00534 0.49 -0.4
568,695 - PFR28_00534 0.58 -1.8
568,925 + PFR28_00534 0.84 +1.2
568,925 + PFR28_00534 0.84 -1.3
568,925 + PFR28_00534 0.84 +0.7
568,925 + PFR28_00534 0.84 -0.9
568,925 + PFR28_00534 0.84 +0.8
568,925 + PFR28_00534 0.84 -0.9
568,925 + PFR28_00534 0.84 +0.1
568,926 - PFR28_00534 0.84 +0.6
568,926 - PFR28_00534 0.84 +0.2
568,926 - PFR28_00534 0.84 +0.1
568,926 - PFR28_00534 0.84 +0.3
568,926 - PFR28_00534 0.84 +0.0
569,166 + PFR28_00535 0.26 -0.0
569,195 + PFR28_00535 0.36 -0.8
569,196 - PFR28_00535 0.36 -0.5
569,447 + +1.2
569,447 + -0.7
569,447 + -0.2
569,448 - +0.1
569,448 - +0.4
569,448 - -1.1
569,448 - +0.4
569,448 - +0.2
569,448 - +0.8
569,472 - -0.0
569,487 + -0.2
569,620 + +0.2
569,641 + +0.1
569,641 + -0.4
569,641 + -0.1
569,641 + +1.7
569,641 + -2.2
569,641 + +0.0
569,641 + +1.6
569,641 + +0.3
569,641 + -2.8
569,641 + -1.3
569,641 + -0.4
569,641 + +0.3
569,641 + -0.0
569,641 + +0.3
569,642 - +1.7
569,642 - +0.7
569,642 - +1.1
569,642 - +0.1
569,642 - -0.1
569,642 - -0.7
569,642 - -0.4
569,642 - +0.6
569,642 - +3.6
569,642 - +0.7
569,642 - +0.0
569,642 - +0.6
569,642 - -0.5
569,642 - -0.4
569,642 - +1.0
569,642 - -0.8
569,642 - +1.2
569,642 - +1.9
569,642 - +0.0
569,642 - +0.1
569,642 - +0.1
569,735 + -0.9
569,735 + +0.8
569,736 - +1.2
569,736 - -0.4
569,813 + PFR28_00536 0.13 -0.5
569,813 + PFR28_00536 0.13 -0.2
569,813 + PFR28_00536 0.13 +0.6
569,813 + PFR28_00536 0.13 +0.9
569,813 + PFR28_00536 0.13 +0.0
569,813 + PFR28_00536 0.13 +1.7
569,814 - PFR28_00536 0.13 -0.0
569,814 - PFR28_00536 0.13 +0.3
569,814 - PFR28_00536 0.13 -0.8
569,814 - PFR28_00536 0.13 -0.6
569,814 - PFR28_00536 0.13 -0.8
569,814 - PFR28_00536 0.13 +0.6
569,814 - PFR28_00536 0.13 +0.9
569,814 - PFR28_00536 0.13 +0.4
569,814 - PFR28_00536 0.13 +0.3
569,814 - PFR28_00536 0.13 -0.3
569,814 - PFR28_00536 0.13 -0.7
569,814 - PFR28_00536 0.13 +0.7
569,814 - PFR28_00536 0.13 -2.6
570,043 - PFR28_00536 0.46 +1.3
570,245 + PFR28_00536 0.75 +1.4

Or see this region's nucleotide sequence