Strain Fitness in Pseudomonas sp. RS175 around PFR28_00158

Experiment: Cytidine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00156 and PFR28_00157 are separated by 32 nucleotidesPFR28_00157 and PFR28_00158 are separated by 56 nucleotidesPFR28_00158 and PFR28_00159 are separated by 61 nucleotides PFR28_00156: PFR28_00156 - Rod shape-determining protein MreD, at 180,922 to 181,410 _00156 PFR28_00157: PFR28_00157 - dTTP/UTP pyrophosphatase, at 181,443 to 182,039 _00157 PFR28_00158: PFR28_00158 - Ribonuclease G, at 182,096 to 183,553 _00158 PFR28_00159: PFR28_00159 - hypothetical protein, at 183,615 to 187,418 _00159 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1at 181.129 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.455 kb on + strandat 181.455 kb on + strandat 181.572 kb on + strand, within PFR28_00157at 181.572 kb on + strand, within PFR28_00157at 181.573 kb on - strand, within PFR28_00157at 181.573 kb on - strand, within PFR28_00157at 181.573 kb on - strand, within PFR28_00157at 181.857 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.897 kb on - strand, within PFR28_00157at 181.897 kb on - strand, within PFR28_00157at 181.897 kb on - strand, within PFR28_00157at 181.901 kb on + strand, within PFR28_00157at 181.902 kb on - strand, within PFR28_00157at 181.902 kb on - strand, within PFR28_00157at 181.948 kb on - strand, within PFR28_00157at 181.948 kb on - strand, within PFR28_00157at 182.009 kb on - strandat 182.009 kb on - strandat 182.009 kb on - strandat 182.009 kb on - strandat 182.066 kb on - strandat 182.188 kb on + strandat 182.188 kb on + strandat 182.189 kb on - strandat 182.189 kb on - strandat 182.215 kb on + strandat 182.216 kb on - strandat 182.216 kb on - strandat 182.219 kb on + strandat 182.219 kb on + strandat 182.219 kb on + strandat 182.220 kb on - strandat 182.220 kb on - strandat 182.453 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.588 kb on - strand, within PFR28_00158at 182.646 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.861 kb on + strand, within PFR28_00158at 182.955 kb on - strand, within PFR28_00158at 183.347 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.403 kb on + strand, within PFR28_00158at 183.404 kb on - strand, within PFR28_00158at 183.404 kb on - strand, within PFR28_00158at 183.404 kb on - strand, within PFR28_00158at 183.404 kb on - strand, within PFR28_00158at 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.518 kb on + strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.519 kb on - strandat 183.533 kb on + strandat 183.533 kb on + strandat 183.533 kb on + strandat 183.534 kb on - strandat 183.534 kb on - strandat 183.534 kb on - strandat 183.685 kb on + strandat 183.685 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.699 kb on + strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 183.700 kb on - strandat 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.152 kb on + strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.153 kb on - strand, within PFR28_00159at 184.294 kb on - strand, within PFR28_00159at 184.294 kb on - strand, within PFR28_00159at 184.461 kb on + strand, within PFR28_00159at 184.462 kb on - strand, within PFR28_00159at 184.509 kb on + strand, within PFR28_00159at 184.509 kb on + strand, within PFR28_00159

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine carbon 10 mM
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181,129 + PFR28_00156 0.42 +1.6
181,277 + PFR28_00156 0.73 +0.2
181,277 + PFR28_00156 0.73 +1.0
181,277 + PFR28_00156 0.73 +0.2
181,277 + PFR28_00156 0.73 +0.0
181,277 + PFR28_00156 0.73 -0.6
181,277 + PFR28_00156 0.73 +0.4
181,277 + PFR28_00156 0.73 +0.8
181,277 + PFR28_00156 0.73 +0.1
181,278 - PFR28_00156 0.73 -0.8
181,278 - PFR28_00156 0.73 +0.4
181,278 - PFR28_00156 0.73 +0.6
181,278 - PFR28_00156 0.73 -0.0
181,278 - PFR28_00156 0.73 +0.1
181,455 + -1.0
181,455 + -0.7
181,572 + PFR28_00157 0.22 +0.5
181,572 + PFR28_00157 0.22 +0.6
181,573 - PFR28_00157 0.22 -0.0
181,573 - PFR28_00157 0.22 -2.0
181,573 - PFR28_00157 0.22 +0.2
181,857 + PFR28_00157 0.69 +0.5
181,896 + PFR28_00157 0.76 +0.1
181,896 + PFR28_00157 0.76 +1.1
181,896 + PFR28_00157 0.76 +1.0
181,896 + PFR28_00157 0.76 +0.6
181,896 + PFR28_00157 0.76 +0.2
181,896 + PFR28_00157 0.76 -0.5
181,896 + PFR28_00157 0.76 -0.7
181,896 + PFR28_00157 0.76 +0.8
181,896 + PFR28_00157 0.76 -0.4
181,896 + PFR28_00157 0.76 +0.2
181,897 - PFR28_00157 0.76 +0.8
181,897 - PFR28_00157 0.76 +1.1
181,897 - PFR28_00157 0.76 -0.9
181,901 + PFR28_00157 0.77 +0.5
181,902 - PFR28_00157 0.77 -0.5
181,902 - PFR28_00157 0.77 -1.9
181,948 - PFR28_00157 0.85 -2.0
181,948 - PFR28_00157 0.85 +0.5
182,009 - +0.7
182,009 - +0.6
182,009 - +0.3
182,009 - -0.2
182,066 - +1.2
182,188 + -0.7
182,188 + -1.4
182,189 - -1.6
182,189 - -2.1
182,215 + -0.0
182,216 - -2.4
182,216 - -0.5
182,219 + -0.4
182,219 + -0.6
182,219 + -0.9
182,220 - +0.7
182,220 - +0.4
182,453 + PFR28_00158 0.24 +1.2
182,462 + PFR28_00158 0.25 -0.3
182,462 + PFR28_00158 0.25 -2.9
182,462 + PFR28_00158 0.25 -2.4
182,462 + PFR28_00158 0.25 -1.6
182,462 + PFR28_00158 0.25 -0.0
182,462 + PFR28_00158 0.25 +1.1
182,462 + PFR28_00158 0.25 +0.7
182,462 + PFR28_00158 0.25 -0.6
182,462 + PFR28_00158 0.25 -1.5
182,462 + PFR28_00158 0.25 -1.0
182,463 - PFR28_00158 0.25 +0.0
182,463 - PFR28_00158 0.25 +0.6
182,463 - PFR28_00158 0.25 -1.4
182,463 - PFR28_00158 0.25 -2.3
182,463 - PFR28_00158 0.25 -1.0
182,588 - PFR28_00158 0.34 -0.2
182,646 - PFR28_00158 0.38 -2.3
182,712 - PFR28_00158 0.42 -1.7
182,712 - PFR28_00158 0.42 -1.6
182,712 - PFR28_00158 0.42 -2.1
182,861 + PFR28_00158 0.52 -0.6
182,955 - PFR28_00158 0.59 -0.3
183,347 + PFR28_00158 0.86 +1.3
183,403 + PFR28_00158 0.90 -0.6
183,403 + PFR28_00158 0.90 -0.8
183,403 + PFR28_00158 0.90 -2.0
183,403 + PFR28_00158 0.90 -1.3
183,403 + PFR28_00158 0.90 +0.2
183,403 + PFR28_00158 0.90 -0.2
183,403 + PFR28_00158 0.90 +0.3
183,403 + PFR28_00158 0.90 -0.6
183,403 + PFR28_00158 0.90 -1.0
183,404 - PFR28_00158 0.90 -0.0
183,404 - PFR28_00158 0.90 -2.0
183,404 - PFR28_00158 0.90 -2.3
183,404 - PFR28_00158 0.90 -0.6
183,518 + +0.0
183,518 + -1.0
183,518 + -1.6
183,518 + -0.4
183,518 + -1.6
183,518 + -0.0
183,518 + -0.5
183,518 + -2.1
183,518 + -0.6
183,518 + -0.1
183,519 - -2.8
183,519 - -0.2
183,519 - -2.0
183,519 - +0.8
183,519 - -0.6
183,519 - -1.0
183,533 + -2.2
183,533 + -0.6
183,533 + -0.2
183,534 - -1.7
183,534 - -0.4
183,534 - -1.0
183,685 + -0.1
183,685 + -1.6
183,699 + +0.6
183,699 + -0.4
183,699 + +0.6
183,699 + -1.8
183,699 + -1.1
183,699 + -0.6
183,699 + -0.9
183,699 + +1.0
183,699 + -0.6
183,699 + -1.1
183,699 + -0.7
183,699 + -0.6
183,699 + +0.6
183,699 + +0.2
183,699 + -0.4
183,700 - -0.6
183,700 - -0.7
183,700 - +0.9
183,700 - -0.2
183,700 - -1.9
183,700 - +1.3
183,700 - -1.1
183,700 - -0.0
183,700 - -0.7
183,700 - -0.1
183,700 - +1.0
183,700 - -0.5
183,700 - +0.1
183,700 - +1.6
183,700 - -0.7
183,700 - -0.2
184,152 + PFR28_00159 0.14 -0.6
184,152 + PFR28_00159 0.14 +0.2
184,152 + PFR28_00159 0.14 -0.2
184,152 + PFR28_00159 0.14 -0.8
184,152 + PFR28_00159 0.14 -1.2
184,152 + PFR28_00159 0.14 +0.8
184,152 + PFR28_00159 0.14 +0.3
184,152 + PFR28_00159 0.14 +0.1
184,153 - PFR28_00159 0.14 -1.4
184,153 - PFR28_00159 0.14 -0.7
184,153 - PFR28_00159 0.14 +0.4
184,153 - PFR28_00159 0.14 -2.1
184,153 - PFR28_00159 0.14 +0.7
184,153 - PFR28_00159 0.14 +1.6
184,153 - PFR28_00159 0.14 +0.1
184,294 - PFR28_00159 0.18 -0.4
184,294 - PFR28_00159 0.18 -0.3
184,461 + PFR28_00159 0.22 +1.6
184,462 - PFR28_00159 0.22 +0.5
184,509 + PFR28_00159 0.24 +0.5
184,509 + PFR28_00159 0.24 -1.0

Or see this region's nucleotide sequence