Strain Fitness in Serratia liquefaciens MT49 around IAI46_25050

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25045 and IAI46_25050 overlap by 4 nucleotidesIAI46_25050 and IAI46_25055 are separated by 5 nucleotidesIAI46_25055 and IAI46_25060 are separated by 61 nucleotides IAI46_25045: IAI46_25045 - multidrug transporter subunit MdtD, at 5,346,934 to 5,348,349 _25045 IAI46_25050: IAI46_25050 - ribose operon transcriptional repressor RbsR, at 5,348,346 to 5,349,347 _25050 IAI46_25055: IAI46_25055 - ribokinase, at 5,349,353 to 5,350,279 _25055 IAI46_25060: IAI46_25060 - ribose ABC transporter substrate-binding protein RbsB, at 5,350,341 to 5,351,228 _25060 Position (kb) 5348 5349 5350Strain fitness (log2 ratio) -1 0 1at 5347.411 kb on + strand, within IAI46_25045at 5347.411 kb on + strand, within IAI46_25045at 5347.411 kb on + strand, within IAI46_25045at 5347.412 kb on - strand, within IAI46_25045at 5347.471 kb on + strand, within IAI46_25045at 5347.471 kb on + strand, within IAI46_25045at 5347.471 kb on + strand, within IAI46_25045at 5347.471 kb on + strand, within IAI46_25045at 5347.471 kb on + strand, within IAI46_25045at 5347.472 kb on - strand, within IAI46_25045at 5347.472 kb on - strand, within IAI46_25045at 5347.483 kb on + strand, within IAI46_25045at 5347.483 kb on + strand, within IAI46_25045at 5347.483 kb on + strand, within IAI46_25045at 5347.483 kb on + strand, within IAI46_25045at 5347.484 kb on - strand, within IAI46_25045at 5347.484 kb on - strand, within IAI46_25045at 5347.484 kb on - strand, within IAI46_25045at 5347.484 kb on - strand, within IAI46_25045at 5347.485 kb on + strand, within IAI46_25045at 5347.485 kb on + strand, within IAI46_25045at 5347.485 kb on + strand, within IAI46_25045at 5347.485 kb on + strand, within IAI46_25045at 5347.486 kb on - strand, within IAI46_25045at 5347.533 kb on + strand, within IAI46_25045at 5347.533 kb on + strand, within IAI46_25045at 5347.534 kb on - strand, within IAI46_25045at 5347.606 kb on + strand, within IAI46_25045at 5347.606 kb on + strand, within IAI46_25045at 5347.606 kb on + strand, within IAI46_25045at 5347.606 kb on + strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.607 kb on - strand, within IAI46_25045at 5347.608 kb on + strand, within IAI46_25045at 5347.608 kb on + strand, within IAI46_25045at 5347.608 kb on + strand, within IAI46_25045at 5347.608 kb on + strand, within IAI46_25045at 5347.609 kb on - strand, within IAI46_25045at 5347.609 kb on - strand, within IAI46_25045at 5347.657 kb on - strand, within IAI46_25045at 5347.824 kb on + strand, within IAI46_25045at 5347.970 kb on + strand, within IAI46_25045at 5348.037 kb on + strand, within IAI46_25045at 5348.038 kb on - strand, within IAI46_25045at 5348.038 kb on - strand, within IAI46_25045at 5348.038 kb on - strand, within IAI46_25045at 5348.058 kb on + strand, within IAI46_25045at 5348.171 kb on + strand, within IAI46_25045at 5348.172 kb on - strand, within IAI46_25045at 5348.172 kb on - strand, within IAI46_25045at 5348.187 kb on + strand, within IAI46_25045at 5348.187 kb on + strand, within IAI46_25045at 5348.187 kb on + strand, within IAI46_25045at 5348.187 kb on + strand, within IAI46_25045at 5348.188 kb on - strand, within IAI46_25045at 5348.188 kb on - strand, within IAI46_25045at 5348.188 kb on - strand, within IAI46_25045at 5348.188 kb on - strand, within IAI46_25045at 5348.188 kb on - strand, within IAI46_25045at 5348.188 kb on - strand, within IAI46_25045at 5348.222 kb on - strandat 5348.222 kb on - strandat 5348.222 kb on - strandat 5348.229 kb on + strandat 5348.271 kb on + strandat 5348.272 kb on - strandat 5348.272 kb on - strandat 5348.280 kb on - strandat 5348.340 kb on + strandat 5348.392 kb on - strandat 5348.484 kb on - strand, within IAI46_25050at 5348.507 kb on - strand, within IAI46_25050at 5348.507 kb on - strand, within IAI46_25050at 5348.575 kb on + strand, within IAI46_25050at 5348.575 kb on + strand, within IAI46_25050at 5348.587 kb on + strand, within IAI46_25050at 5348.708 kb on - strand, within IAI46_25050at 5348.783 kb on + strand, within IAI46_25050at 5348.922 kb on + strand, within IAI46_25050at 5348.922 kb on + strand, within IAI46_25050at 5348.928 kb on + strand, within IAI46_25050at 5348.928 kb on + strand, within IAI46_25050at 5348.929 kb on - strand, within IAI46_25050at 5348.929 kb on - strand, within IAI46_25050at 5348.978 kb on + strand, within IAI46_25050at 5349.026 kb on + strand, within IAI46_25050at 5349.026 kb on + strand, within IAI46_25050at 5349.060 kb on - strand, within IAI46_25050at 5349.080 kb on - strand, within IAI46_25050at 5349.127 kb on + strand, within IAI46_25050at 5349.127 kb on + strand, within IAI46_25050at 5349.128 kb on - strand, within IAI46_25050at 5349.214 kb on + strand, within IAI46_25050at 5349.214 kb on + strand, within IAI46_25050at 5349.214 kb on + strand, within IAI46_25050at 5349.214 kb on + strand, within IAI46_25050at 5349.215 kb on - strand, within IAI46_25050at 5349.215 kb on - strand, within IAI46_25050at 5349.229 kb on - strand, within IAI46_25050at 5349.229 kb on - strand, within IAI46_25050at 5349.229 kb on - strand, within IAI46_25050at 5349.229 kb on - strand, within IAI46_25050at 5349.278 kb on + strandat 5349.279 kb on - strandat 5349.279 kb on - strandat 5349.279 kb on - strandat 5349.282 kb on - strandat 5349.282 kb on - strandat 5349.284 kb on + strandat 5349.354 kb on + strandat 5349.532 kb on + strand, within IAI46_25055at 5349.532 kb on + strand, within IAI46_25055at 5349.535 kb on + strand, within IAI46_25055at 5349.535 kb on + strand, within IAI46_25055at 5349.536 kb on - strand, within IAI46_25055at 5349.536 kb on - strand, within IAI46_25055at 5349.547 kb on + strand, within IAI46_25055at 5349.695 kb on - strand, within IAI46_25055at 5349.695 kb on - strand, within IAI46_25055at 5349.730 kb on + strand, within IAI46_25055at 5349.731 kb on - strand, within IAI46_25055at 5349.736 kb on + strand, within IAI46_25055at 5349.736 kb on + strand, within IAI46_25055at 5349.737 kb on - strand, within IAI46_25055at 5349.737 kb on - strand, within IAI46_25055at 5349.752 kb on + strand, within IAI46_25055at 5349.753 kb on - strand, within IAI46_25055at 5349.753 kb on - strand, within IAI46_25055at 5349.900 kb on + strand, within IAI46_25055at 5349.912 kb on + strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.023 kb on - strand, within IAI46_25055at 5350.034 kb on - strand, within IAI46_25055at 5350.112 kb on - strand, within IAI46_25055at 5350.112 kb on - strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.175 kb on - strand, within IAI46_25055at 5350.175 kb on - strand, within IAI46_25055at 5350.176 kb on + strand, within IAI46_25055at 5350.177 kb on - strand, within IAI46_25055at 5350.177 kb on - strand, within IAI46_25055at 5350.225 kb on + strandat 5350.225 kb on + strandat 5350.226 kb on - strandat 5350.226 kb on - strandat 5350.226 kb on - strandat 5350.231 kb on + strandat 5350.232 kb on - strandat 5350.246 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.297 kb on + strandat 5350.298 kb on - strandat 5350.309 kb on + strandat 5350.309 kb on + strandat 5350.310 kb on - strandat 5350.310 kb on - strandat 5350.310 kb on - strandat 5350.336 kb on - strandat 5350.336 kb on - strandat 5350.342 kb on + strandat 5350.342 kb on + strandat 5350.343 kb on - strandat 5350.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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5,347,411 + IAI46_25045 0.34 +0.1
5,347,411 + IAI46_25045 0.34 -0.7
5,347,411 + IAI46_25045 0.34 +0.0
5,347,412 - IAI46_25045 0.34 +0.8
5,347,471 + IAI46_25045 0.38 -0.3
5,347,471 + IAI46_25045 0.38 +0.4
5,347,471 + IAI46_25045 0.38 +1.5
5,347,471 + IAI46_25045 0.38 -0.4
5,347,471 + IAI46_25045 0.38 -0.1
5,347,472 - IAI46_25045 0.38 +0.2
5,347,472 - IAI46_25045 0.38 -1.1
5,347,483 + IAI46_25045 0.39 -0.4
5,347,483 + IAI46_25045 0.39 +0.3
5,347,483 + IAI46_25045 0.39 -0.0
5,347,483 + IAI46_25045 0.39 -0.2
5,347,484 - IAI46_25045 0.39 +0.7
5,347,484 - IAI46_25045 0.39 -0.1
5,347,484 - IAI46_25045 0.39 -0.0
5,347,484 - IAI46_25045 0.39 +0.2
5,347,485 + IAI46_25045 0.39 +1.4
5,347,485 + IAI46_25045 0.39 +0.3
5,347,485 + IAI46_25045 0.39 -0.5
5,347,485 + IAI46_25045 0.39 -0.7
5,347,486 - IAI46_25045 0.39 +0.3
5,347,533 + IAI46_25045 0.42 -0.3
5,347,533 + IAI46_25045 0.42 +0.3
5,347,534 - IAI46_25045 0.42 -0.6
5,347,606 + IAI46_25045 0.47 -0.4
5,347,606 + IAI46_25045 0.47 +1.2
5,347,606 + IAI46_25045 0.47 -0.1
5,347,606 + IAI46_25045 0.47 -0.6
5,347,607 - IAI46_25045 0.48 +0.5
5,347,607 - IAI46_25045 0.48 +0.7
5,347,607 - IAI46_25045 0.48 -0.1
5,347,607 - IAI46_25045 0.48 +0.5
5,347,607 - IAI46_25045 0.48 -1.4
5,347,607 - IAI46_25045 0.48 -0.4
5,347,607 - IAI46_25045 0.48 +0.8
5,347,607 - IAI46_25045 0.48 -0.7
5,347,607 - IAI46_25045 0.48 +0.4
5,347,608 + IAI46_25045 0.48 -0.2
5,347,608 + IAI46_25045 0.48 -0.1
5,347,608 + IAI46_25045 0.48 -0.4
5,347,608 + IAI46_25045 0.48 -0.8
5,347,609 - IAI46_25045 0.48 -0.3
5,347,609 - IAI46_25045 0.48 +0.2
5,347,657 - IAI46_25045 0.51 -0.5
5,347,824 + IAI46_25045 0.63 -1.0
5,347,970 + IAI46_25045 0.73 +0.0
5,348,037 + IAI46_25045 0.78 +0.9
5,348,038 - IAI46_25045 0.78 +0.8
5,348,038 - IAI46_25045 0.78 +0.6
5,348,038 - IAI46_25045 0.78 +0.0
5,348,058 + IAI46_25045 0.79 -0.0
5,348,171 + IAI46_25045 0.87 -0.3
5,348,172 - IAI46_25045 0.87 -0.2
5,348,172 - IAI46_25045 0.87 -1.3
5,348,187 + IAI46_25045 0.88 +0.6
5,348,187 + IAI46_25045 0.88 +0.3
5,348,187 + IAI46_25045 0.88 -0.4
5,348,187 + IAI46_25045 0.88 +0.1
5,348,188 - IAI46_25045 0.89 +0.6
5,348,188 - IAI46_25045 0.89 -0.5
5,348,188 - IAI46_25045 0.89 +0.2
5,348,188 - IAI46_25045 0.89 +0.5
5,348,188 - IAI46_25045 0.89 -0.8
5,348,188 - IAI46_25045 0.89 -1.0
5,348,222 - +0.5
5,348,222 - -0.4
5,348,222 - +0.0
5,348,229 + +0.2
5,348,271 + +1.3
5,348,272 - -0.3
5,348,272 - +0.9
5,348,280 - -0.8
5,348,340 + -0.4
5,348,392 - +0.4
5,348,484 - IAI46_25050 0.14 -0.5
5,348,507 - IAI46_25050 0.16 +0.3
5,348,507 - IAI46_25050 0.16 -0.4
5,348,575 + IAI46_25050 0.23 +0.3
5,348,575 + IAI46_25050 0.23 +0.1
5,348,587 + IAI46_25050 0.24 -1.7
5,348,708 - IAI46_25050 0.36 -0.7
5,348,783 + IAI46_25050 0.44 +0.7
5,348,922 + IAI46_25050 0.57 -0.2
5,348,922 + IAI46_25050 0.57 +0.3
5,348,928 + IAI46_25050 0.58 +1.4
5,348,928 + IAI46_25050 0.58 -0.7
5,348,929 - IAI46_25050 0.58 +0.8
5,348,929 - IAI46_25050 0.58 -0.6
5,348,978 + IAI46_25050 0.63 +0.6
5,349,026 + IAI46_25050 0.68 -0.1
5,349,026 + IAI46_25050 0.68 -0.4
5,349,060 - IAI46_25050 0.71 +1.3
5,349,080 - IAI46_25050 0.73 -0.9
5,349,127 + IAI46_25050 0.78 +0.5
5,349,127 + IAI46_25050 0.78 -0.8
5,349,128 - IAI46_25050 0.78 -1.2
5,349,214 + IAI46_25050 0.87 -0.4
5,349,214 + IAI46_25050 0.87 +0.6
5,349,214 + IAI46_25050 0.87 -0.0
5,349,214 + IAI46_25050 0.87 +0.1
5,349,215 - IAI46_25050 0.87 -1.4
5,349,215 - IAI46_25050 0.87 -0.7
5,349,229 - IAI46_25050 0.88 +1.5
5,349,229 - IAI46_25050 0.88 -0.1
5,349,229 - IAI46_25050 0.88 +0.5
5,349,229 - IAI46_25050 0.88 -0.9
5,349,278 + -0.0
5,349,279 - -0.0
5,349,279 - -1.0
5,349,279 - -1.2
5,349,282 - -0.6
5,349,282 - +0.3
5,349,284 + +0.8
5,349,354 + +0.5
5,349,532 + IAI46_25055 0.19 +0.1
5,349,532 + IAI46_25055 0.19 -0.3
5,349,535 + IAI46_25055 0.20 +0.4
5,349,535 + IAI46_25055 0.20 -0.1
5,349,536 - IAI46_25055 0.20 -0.6
5,349,536 - IAI46_25055 0.20 -0.8
5,349,547 + IAI46_25055 0.21 +0.6
5,349,695 - IAI46_25055 0.37 +0.4
5,349,695 - IAI46_25055 0.37 +0.5
5,349,730 + IAI46_25055 0.41 +0.5
5,349,731 - IAI46_25055 0.41 -0.4
5,349,736 + IAI46_25055 0.41 +0.0
5,349,736 + IAI46_25055 0.41 -0.1
5,349,737 - IAI46_25055 0.41 -0.3
5,349,737 - IAI46_25055 0.41 +0.4
5,349,752 + IAI46_25055 0.43 +0.2
5,349,753 - IAI46_25055 0.43 -0.3
5,349,753 - IAI46_25055 0.43 +0.2
5,349,900 + IAI46_25055 0.59 +1.0
5,349,912 + IAI46_25055 0.60 +0.2
5,350,016 - IAI46_25055 0.72 +0.3
5,350,016 - IAI46_25055 0.72 -1.2
5,350,016 - IAI46_25055 0.72 +0.2
5,350,023 - IAI46_25055 0.72 +0.1
5,350,034 - IAI46_25055 0.73 -0.9
5,350,112 - IAI46_25055 0.82 -0.0
5,350,112 - IAI46_25055 0.82 +1.1
5,350,174 + IAI46_25055 0.89 +1.4
5,350,174 + IAI46_25055 0.89 +0.3
5,350,174 + IAI46_25055 0.89 +0.5
5,350,175 - IAI46_25055 0.89 -0.6
5,350,175 - IAI46_25055 0.89 -0.4
5,350,176 + IAI46_25055 0.89 -0.3
5,350,177 - IAI46_25055 0.89 +0.1
5,350,177 - IAI46_25055 0.89 -0.4
5,350,225 + +0.2
5,350,225 + +0.6
5,350,226 - -0.5
5,350,226 - -0.1
5,350,226 - -0.6
5,350,231 + +0.6
5,350,232 - -1.0
5,350,246 + -0.9
5,350,267 + -0.4
5,350,267 + +0.0
5,350,267 + +0.1
5,350,267 + -0.2
5,350,267 + -1.4
5,350,268 - +0.5
5,350,268 - -0.1
5,350,268 - +0.6
5,350,268 - -0.3
5,350,268 - +0.1
5,350,297 + +0.1
5,350,298 - -0.5
5,350,309 + -0.2
5,350,309 + -1.5
5,350,310 - -0.4
5,350,310 - +1.1
5,350,310 - +1.0
5,350,336 - -0.3
5,350,336 - -1.4
5,350,342 + -0.4
5,350,342 + +0.4
5,350,343 - -0.9
5,350,343 - +0.5

Or see this region's nucleotide sequence