Strain Fitness in Serratia liquefaciens MT49 around IAI46_24995

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24990 and IAI46_24995 are separated by 47 nucleotidesIAI46_24995 and IAI46_25000 are separated by 29 nucleotides IAI46_24990: IAI46_24990 - acyltransferase, at 5,336,254 to 5,337,144 _24990 IAI46_24995: IAI46_24995 - thiol:disulfide interchange protein DsbA, at 5,337,192 to 5,337,815 _24995 IAI46_25000: IAI46_25000 - serine/threonine protein kinase, at 5,337,845 to 5,338,831 _25000 Position (kb) 5337 5338Strain fitness (log2 ratio) -2 -1 0 1 2at 5336.210 kb on + strandat 5336.210 kb on + strandat 5336.210 kb on + strandat 5336.210 kb on + strandat 5336.210 kb on + strandat 5336.211 kb on - strandat 5336.211 kb on - strandat 5336.220 kb on + strandat 5336.220 kb on + strandat 5336.220 kb on + strandat 5336.220 kb on + strandat 5336.220 kb on + strandat 5336.220 kb on + strandat 5336.221 kb on - strandat 5336.221 kb on - strandat 5336.221 kb on - strandat 5336.221 kb on - strandat 5336.221 kb on - strandat 5336.247 kb on + strandat 5336.247 kb on + strandat 5336.247 kb on + strandat 5336.247 kb on + strandat 5336.247 kb on + strandat 5336.248 kb on - strandat 5336.249 kb on + strandat 5336.249 kb on + strandat 5336.318 kb on + strandat 5336.318 kb on + strandat 5336.318 kb on + strandat 5336.319 kb on - strandat 5336.338 kb on - strandat 5336.356 kb on - strand, within IAI46_24990at 5336.356 kb on - strand, within IAI46_24990at 5336.360 kb on + strand, within IAI46_24990at 5336.361 kb on - strand, within IAI46_24990at 5336.361 kb on - strand, within IAI46_24990at 5336.391 kb on + strand, within IAI46_24990at 5336.391 kb on + strand, within IAI46_24990at 5336.391 kb on + strand, within IAI46_24990at 5336.391 kb on + strand, within IAI46_24990at 5336.391 kb on + strand, within IAI46_24990at 5336.392 kb on - strand, within IAI46_24990at 5336.392 kb on - strand, within IAI46_24990at 5336.412 kb on + strand, within IAI46_24990at 5336.447 kb on + strand, within IAI46_24990at 5336.447 kb on + strand, within IAI46_24990at 5336.447 kb on + strand, within IAI46_24990at 5336.448 kb on - strand, within IAI46_24990at 5336.448 kb on - strand, within IAI46_24990at 5336.448 kb on - strand, within IAI46_24990at 5336.448 kb on - strand, within IAI46_24990at 5336.450 kb on + strand, within IAI46_24990at 5336.450 kb on + strand, within IAI46_24990at 5336.451 kb on - strand, within IAI46_24990at 5336.451 kb on - strand, within IAI46_24990at 5336.454 kb on + strand, within IAI46_24990at 5336.454 kb on + strand, within IAI46_24990at 5336.454 kb on + strand, within IAI46_24990at 5336.455 kb on - strand, within IAI46_24990at 5336.455 kb on - strand, within IAI46_24990at 5336.458 kb on - strand, within IAI46_24990at 5336.480 kb on + strand, within IAI46_24990at 5336.480 kb on + strand, within IAI46_24990at 5336.481 kb on - strand, within IAI46_24990at 5336.481 kb on - strand, within IAI46_24990at 5336.481 kb on - strand, within IAI46_24990at 5336.481 kb on - strand, within IAI46_24990at 5336.530 kb on - strand, within IAI46_24990at 5336.567 kb on + strand, within IAI46_24990at 5336.568 kb on - strand, within IAI46_24990at 5336.568 kb on - strand, within IAI46_24990at 5336.583 kb on + strand, within IAI46_24990at 5336.583 kb on + strand, within IAI46_24990at 5336.584 kb on - strand, within IAI46_24990at 5336.584 kb on - strand, within IAI46_24990at 5336.584 kb on - strand, within IAI46_24990at 5336.595 kb on + strand, within IAI46_24990at 5336.595 kb on + strand, within IAI46_24990at 5336.596 kb on - strand, within IAI46_24990at 5336.599 kb on + strand, within IAI46_24990at 5336.608 kb on - strand, within IAI46_24990at 5336.661 kb on + strand, within IAI46_24990at 5336.693 kb on - strand, within IAI46_24990at 5336.693 kb on - strand, within IAI46_24990at 5336.693 kb on - strand, within IAI46_24990at 5336.693 kb on - strand, within IAI46_24990at 5336.763 kb on + strand, within IAI46_24990at 5336.764 kb on - strand, within IAI46_24990at 5336.853 kb on - strand, within IAI46_24990at 5336.853 kb on - strand, within IAI46_24990at 5336.901 kb on + strand, within IAI46_24990at 5336.946 kb on + strand, within IAI46_24990at 5336.946 kb on + strand, within IAI46_24990at 5336.946 kb on + strand, within IAI46_24990at 5336.949 kb on + strand, within IAI46_24990at 5336.965 kb on - strand, within IAI46_24990at 5336.965 kb on - strand, within IAI46_24990at 5336.965 kb on - strand, within IAI46_24990at 5336.970 kb on + strand, within IAI46_24990at 5336.970 kb on + strand, within IAI46_24990at 5337.003 kb on - strand, within IAI46_24990at 5337.046 kb on + strand, within IAI46_24990at 5337.052 kb on - strand, within IAI46_24990at 5337.216 kb on - strandat 5337.241 kb on + strandat 5337.241 kb on + strandat 5337.242 kb on - strandat 5337.242 kb on - strandat 5337.242 kb on - strandat 5337.242 kb on - strandat 5337.286 kb on + strand, within IAI46_24995at 5337.286 kb on + strand, within IAI46_24995at 5337.287 kb on - strand, within IAI46_24995at 5337.287 kb on - strand, within IAI46_24995at 5337.368 kb on + strand, within IAI46_24995at 5337.372 kb on + strand, within IAI46_24995at 5337.372 kb on + strand, within IAI46_24995at 5337.372 kb on + strand, within IAI46_24995at 5337.397 kb on + strand, within IAI46_24995at 5337.398 kb on - strand, within IAI46_24995at 5337.398 kb on - strand, within IAI46_24995at 5337.456 kb on + strand, within IAI46_24995at 5337.456 kb on + strand, within IAI46_24995at 5337.457 kb on - strand, within IAI46_24995at 5337.457 kb on - strand, within IAI46_24995at 5337.504 kb on - strand, within IAI46_24995at 5337.584 kb on - strand, within IAI46_24995at 5337.584 kb on - strand, within IAI46_24995at 5337.584 kb on - strand, within IAI46_24995at 5337.596 kb on + strand, within IAI46_24995at 5337.597 kb on - strand, within IAI46_24995at 5337.597 kb on - strand, within IAI46_24995at 5337.658 kb on + strand, within IAI46_24995at 5337.659 kb on - strand, within IAI46_24995at 5337.673 kb on + strand, within IAI46_24995at 5337.673 kb on + strand, within IAI46_24995at 5337.673 kb on + strand, within IAI46_24995at 5337.673 kb on + strand, within IAI46_24995at 5337.673 kb on + strand, within IAI46_24995at 5337.674 kb on - strand, within IAI46_24995at 5337.674 kb on - strand, within IAI46_24995at 5337.674 kb on - strand, within IAI46_24995at 5337.674 kb on - strand, within IAI46_24995at 5337.674 kb on - strand, within IAI46_24995at 5337.693 kb on + strand, within IAI46_24995at 5337.733 kb on + strand, within IAI46_24995at 5337.733 kb on + strand, within IAI46_24995at 5337.733 kb on + strand, within IAI46_24995at 5337.734 kb on - strand, within IAI46_24995at 5337.740 kb on + strand, within IAI46_24995at 5337.741 kb on - strand, within IAI46_24995at 5337.741 kb on - strand, within IAI46_24995at 5337.749 kb on + strand, within IAI46_24995at 5337.780 kb on + strandat 5337.781 kb on - strandat 5337.816 kb on - strandat 5337.821 kb on + strandat 5337.822 kb on - strandat 5337.839 kb on - strandat 5337.839 kb on - strandat 5337.849 kb on + strandat 5337.849 kb on + strandat 5337.849 kb on + strandat 5337.849 kb on + strandat 5337.850 kb on - strandat 5337.889 kb on + strandat 5337.890 kb on - strandat 5338.003 kb on - strand, within IAI46_25000at 5338.003 kb on - strand, within IAI46_25000at 5338.003 kb on - strand, within IAI46_25000at 5338.005 kb on + strand, within IAI46_25000at 5338.005 kb on + strand, within IAI46_25000at 5338.005 kb on + strand, within IAI46_25000at 5338.005 kb on + strand, within IAI46_25000at 5338.006 kb on - strand, within IAI46_25000at 5338.018 kb on + strand, within IAI46_25000at 5338.018 kb on + strand, within IAI46_25000at 5338.019 kb on - strand, within IAI46_25000at 5338.077 kb on + strand, within IAI46_25000at 5338.078 kb on - strand, within IAI46_25000at 5338.078 kb on - strand, within IAI46_25000at 5338.094 kb on - strand, within IAI46_25000at 5338.097 kb on + strand, within IAI46_25000at 5338.097 kb on + strand, within IAI46_25000at 5338.098 kb on - strand, within IAI46_25000at 5338.098 kb on - strand, within IAI46_25000at 5338.098 kb on - strand, within IAI46_25000at 5338.213 kb on + strand, within IAI46_25000at 5338.377 kb on + strand, within IAI46_25000at 5338.378 kb on - strand, within IAI46_25000at 5338.378 kb on - strand, within IAI46_25000at 5338.544 kb on - strand, within IAI46_25000at 5338.552 kb on + strand, within IAI46_25000at 5338.552 kb on + strand, within IAI46_25000at 5338.553 kb on - strand, within IAI46_25000at 5338.568 kb on + strand, within IAI46_25000at 5338.568 kb on + strand, within IAI46_25000at 5338.569 kb on - strand, within IAI46_25000at 5338.569 kb on - strand, within IAI46_25000at 5338.677 kb on + strand, within IAI46_25000at 5338.678 kb on - strand, within IAI46_25000at 5338.678 kb on - strand, within IAI46_25000at 5338.684 kb on + strand, within IAI46_25000at 5338.685 kb on - strand, within IAI46_25000at 5338.699 kb on + strand, within IAI46_25000at 5338.699 kb on + strand, within IAI46_25000at 5338.699 kb on + strand, within IAI46_25000at 5338.700 kb on - strand, within IAI46_25000at 5338.707 kb on + strand, within IAI46_25000at 5338.708 kb on - strand, within IAI46_25000at 5338.723 kb on - strand, within IAI46_25000at 5338.751 kb on + strandat 5338.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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5,336,210 + -0.2
5,336,210 + +0.4
5,336,210 + +0.0
5,336,210 + +0.1
5,336,210 + +0.1
5,336,211 - +0.7
5,336,211 - -0.3
5,336,220 + -0.1
5,336,220 + +1.0
5,336,220 + +0.6
5,336,220 + +0.1
5,336,220 + -1.2
5,336,220 + -0.1
5,336,221 - +1.4
5,336,221 - +0.2
5,336,221 - +0.5
5,336,221 - +0.3
5,336,221 - +0.5
5,336,247 + +0.3
5,336,247 + -0.3
5,336,247 + +0.4
5,336,247 + -1.3
5,336,247 + -0.3
5,336,248 - -0.2
5,336,249 + +1.6
5,336,249 + -0.9
5,336,318 + -0.4
5,336,318 + -0.1
5,336,318 + +0.1
5,336,319 - -0.6
5,336,338 - -0.6
5,336,356 - IAI46_24990 0.11 +0.0
5,336,356 - IAI46_24990 0.11 +0.6
5,336,360 + IAI46_24990 0.12 +0.2
5,336,361 - IAI46_24990 0.12 -0.0
5,336,361 - IAI46_24990 0.12 -0.4
5,336,391 + IAI46_24990 0.15 +0.1
5,336,391 + IAI46_24990 0.15 +0.0
5,336,391 + IAI46_24990 0.15 -0.2
5,336,391 + IAI46_24990 0.15 +0.1
5,336,391 + IAI46_24990 0.15 +0.4
5,336,392 - IAI46_24990 0.15 +0.8
5,336,392 - IAI46_24990 0.15 +0.5
5,336,412 + IAI46_24990 0.18 +0.8
5,336,447 + IAI46_24990 0.22 +0.1
5,336,447 + IAI46_24990 0.22 +0.5
5,336,447 + IAI46_24990 0.22 -0.1
5,336,448 - IAI46_24990 0.22 -0.3
5,336,448 - IAI46_24990 0.22 +0.5
5,336,448 - IAI46_24990 0.22 -0.7
5,336,448 - IAI46_24990 0.22 +1.2
5,336,450 + IAI46_24990 0.22 -0.5
5,336,450 + IAI46_24990 0.22 +0.2
5,336,451 - IAI46_24990 0.22 +0.4
5,336,451 - IAI46_24990 0.22 +0.7
5,336,454 + IAI46_24990 0.22 -0.9
5,336,454 + IAI46_24990 0.22 +0.2
5,336,454 + IAI46_24990 0.22 -0.9
5,336,455 - IAI46_24990 0.23 -0.8
5,336,455 - IAI46_24990 0.23 -0.8
5,336,458 - IAI46_24990 0.23 -0.8
5,336,480 + IAI46_24990 0.25 +0.8
5,336,480 + IAI46_24990 0.25 +0.4
5,336,481 - IAI46_24990 0.25 +0.6
5,336,481 - IAI46_24990 0.25 +1.7
5,336,481 - IAI46_24990 0.25 +0.1
5,336,481 - IAI46_24990 0.25 +0.9
5,336,530 - IAI46_24990 0.31 -0.2
5,336,567 + IAI46_24990 0.35 -0.4
5,336,568 - IAI46_24990 0.35 -0.8
5,336,568 - IAI46_24990 0.35 -0.3
5,336,583 + IAI46_24990 0.37 +0.5
5,336,583 + IAI46_24990 0.37 -0.2
5,336,584 - IAI46_24990 0.37 -0.1
5,336,584 - IAI46_24990 0.37 +0.2
5,336,584 - IAI46_24990 0.37 +0.7
5,336,595 + IAI46_24990 0.38 +0.0
5,336,595 + IAI46_24990 0.38 +0.3
5,336,596 - IAI46_24990 0.38 +0.5
5,336,599 + IAI46_24990 0.39 +0.5
5,336,608 - IAI46_24990 0.40 -0.1
5,336,661 + IAI46_24990 0.46 +0.2
5,336,693 - IAI46_24990 0.49 +0.6
5,336,693 - IAI46_24990 0.49 +0.6
5,336,693 - IAI46_24990 0.49 -0.1
5,336,693 - IAI46_24990 0.49 +0.5
5,336,763 + IAI46_24990 0.57 +0.1
5,336,764 - IAI46_24990 0.57 +1.9
5,336,853 - IAI46_24990 0.67 +0.1
5,336,853 - IAI46_24990 0.67 +0.3
5,336,901 + IAI46_24990 0.73 -0.3
5,336,946 + IAI46_24990 0.78 -1.4
5,336,946 + IAI46_24990 0.78 -0.2
5,336,946 + IAI46_24990 0.78 +0.3
5,336,949 + IAI46_24990 0.78 +0.5
5,336,965 - IAI46_24990 0.80 -0.5
5,336,965 - IAI46_24990 0.80 +0.0
5,336,965 - IAI46_24990 0.80 +1.5
5,336,970 + IAI46_24990 0.80 -0.4
5,336,970 + IAI46_24990 0.80 +0.3
5,337,003 - IAI46_24990 0.84 -1.5
5,337,046 + IAI46_24990 0.89 +0.5
5,337,052 - IAI46_24990 0.90 +0.2
5,337,216 - +0.2
5,337,241 + -1.2
5,337,241 + +0.2
5,337,242 - -0.2
5,337,242 - +0.3
5,337,242 - -0.1
5,337,242 - +0.1
5,337,286 + IAI46_24995 0.15 -0.2
5,337,286 + IAI46_24995 0.15 +0.0
5,337,287 - IAI46_24995 0.15 -0.2
5,337,287 - IAI46_24995 0.15 +0.1
5,337,368 + IAI46_24995 0.28 -0.6
5,337,372 + IAI46_24995 0.29 -1.1
5,337,372 + IAI46_24995 0.29 +0.1
5,337,372 + IAI46_24995 0.29 +0.4
5,337,397 + IAI46_24995 0.33 -0.1
5,337,398 - IAI46_24995 0.33 +0.2
5,337,398 - IAI46_24995 0.33 -0.2
5,337,456 + IAI46_24995 0.42 +0.3
5,337,456 + IAI46_24995 0.42 +0.7
5,337,457 - IAI46_24995 0.42 -0.8
5,337,457 - IAI46_24995 0.42 -0.5
5,337,504 - IAI46_24995 0.50 -0.3
5,337,584 - IAI46_24995 0.63 +1.2
5,337,584 - IAI46_24995 0.63 -0.8
5,337,584 - IAI46_24995 0.63 -0.0
5,337,596 + IAI46_24995 0.65 -0.3
5,337,597 - IAI46_24995 0.65 -0.1
5,337,597 - IAI46_24995 0.65 -0.1
5,337,658 + IAI46_24995 0.75 -2.2
5,337,659 - IAI46_24995 0.75 -0.1
5,337,673 + IAI46_24995 0.77 +0.2
5,337,673 + IAI46_24995 0.77 -0.1
5,337,673 + IAI46_24995 0.77 -0.3
5,337,673 + IAI46_24995 0.77 +0.1
5,337,673 + IAI46_24995 0.77 -0.7
5,337,674 - IAI46_24995 0.77 -0.6
5,337,674 - IAI46_24995 0.77 +0.1
5,337,674 - IAI46_24995 0.77 -0.3
5,337,674 - IAI46_24995 0.77 -0.7
5,337,674 - IAI46_24995 0.77 -0.6
5,337,693 + IAI46_24995 0.80 -2.4
5,337,733 + IAI46_24995 0.87 -0.1
5,337,733 + IAI46_24995 0.87 -0.5
5,337,733 + IAI46_24995 0.87 +1.7
5,337,734 - IAI46_24995 0.87 +0.3
5,337,740 + IAI46_24995 0.88 +0.9
5,337,741 - IAI46_24995 0.88 -0.2
5,337,741 - IAI46_24995 0.88 +1.3
5,337,749 + IAI46_24995 0.89 -0.8
5,337,780 + +1.0
5,337,781 - +0.2
5,337,816 - -0.1
5,337,821 + -0.3
5,337,822 - -0.4
5,337,839 - +1.0
5,337,839 - +0.0
5,337,849 + +0.3
5,337,849 + -0.7
5,337,849 + +0.4
5,337,849 + +1.2
5,337,850 - +0.5
5,337,889 + -1.0
5,337,890 - +0.1
5,338,003 - IAI46_25000 0.16 +0.4
5,338,003 - IAI46_25000 0.16 -0.0
5,338,003 - IAI46_25000 0.16 -0.6
5,338,005 + IAI46_25000 0.16 -1.3
5,338,005 + IAI46_25000 0.16 -0.1
5,338,005 + IAI46_25000 0.16 +1.1
5,338,005 + IAI46_25000 0.16 -0.4
5,338,006 - IAI46_25000 0.16 +0.2
5,338,018 + IAI46_25000 0.18 -0.1
5,338,018 + IAI46_25000 0.18 +0.7
5,338,019 - IAI46_25000 0.18 +0.5
5,338,077 + IAI46_25000 0.24 +1.0
5,338,078 - IAI46_25000 0.24 +0.4
5,338,078 - IAI46_25000 0.24 -1.2
5,338,094 - IAI46_25000 0.25 +1.3
5,338,097 + IAI46_25000 0.26 -0.1
5,338,097 + IAI46_25000 0.26 -0.1
5,338,098 - IAI46_25000 0.26 -0.2
5,338,098 - IAI46_25000 0.26 -1.2
5,338,098 - IAI46_25000 0.26 +0.2
5,338,213 + IAI46_25000 0.37 -1.0
5,338,377 + IAI46_25000 0.54 +0.4
5,338,378 - IAI46_25000 0.54 -0.4
5,338,378 - IAI46_25000 0.54 -1.2
5,338,544 - IAI46_25000 0.71 +0.0
5,338,552 + IAI46_25000 0.72 +0.0
5,338,552 + IAI46_25000 0.72 -0.1
5,338,553 - IAI46_25000 0.72 +0.0
5,338,568 + IAI46_25000 0.73 -0.1
5,338,568 + IAI46_25000 0.73 -0.1
5,338,569 - IAI46_25000 0.73 -0.6
5,338,569 - IAI46_25000 0.73 +0.7
5,338,677 + IAI46_25000 0.84 -0.6
5,338,678 - IAI46_25000 0.84 -1.1
5,338,678 - IAI46_25000 0.84 +0.5
5,338,684 + IAI46_25000 0.85 -0.3
5,338,685 - IAI46_25000 0.85 -1.1
5,338,699 + IAI46_25000 0.87 +0.4
5,338,699 + IAI46_25000 0.87 -1.0
5,338,699 + IAI46_25000 0.87 -0.8
5,338,700 - IAI46_25000 0.87 -0.9
5,338,707 + IAI46_25000 0.87 +0.1
5,338,708 - IAI46_25000 0.87 -0.8
5,338,723 - IAI46_25000 0.89 -0.5
5,338,751 + +0.4
5,338,784 - +0.2

Or see this region's nucleotide sequence