Strain Fitness in Serratia liquefaciens MT49 around IAI46_24155

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24150 and IAI46_24155 are separated by 75 nucleotidesIAI46_24155 and IAI46_24160 are separated by 613 nucleotides IAI46_24150: IAI46_24150 - inorganic phosphate transporter PitA, at 5,146,400 to 5,147,902 _24150 IAI46_24155: IAI46_24155 - universal stress protein UspB, at 5,147,978 to 5,148,313 _24155 IAI46_24160: IAI46_24160 - universal stress protein UspA, at 5,148,927 to 5,149,373 _24160 Position (kb) 5147 5148 5149Strain fitness (log2 ratio) -3 -2 -1 0 1at 5147.309 kb on - strand, within IAI46_24150at 5147.543 kb on + strand, within IAI46_24150at 5147.891 kb on - strandat 5147.900 kb on + strandat 5147.900 kb on + strandat 5147.900 kb on + strandat 5147.900 kb on + strandat 5147.900 kb on + strandat 5147.901 kb on - strandat 5147.983 kb on - strandat 5148.043 kb on + strand, within IAI46_24155at 5148.103 kb on - strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.118 kb on + strand, within IAI46_24155at 5148.119 kb on - strand, within IAI46_24155at 5148.120 kb on + strand, within IAI46_24155at 5148.120 kb on + strand, within IAI46_24155at 5148.134 kb on + strand, within IAI46_24155at 5148.134 kb on + strand, within IAI46_24155at 5148.135 kb on - strand, within IAI46_24155at 5148.186 kb on + strand, within IAI46_24155at 5148.186 kb on + strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.187 kb on - strand, within IAI46_24155at 5148.192 kb on + strand, within IAI46_24155at 5148.192 kb on + strand, within IAI46_24155at 5148.193 kb on - strand, within IAI46_24155at 5148.227 kb on + strand, within IAI46_24155at 5148.227 kb on + strand, within IAI46_24155at 5148.246 kb on + strand, within IAI46_24155at 5148.247 kb on - strand, within IAI46_24155at 5148.247 kb on - strand, within IAI46_24155at 5148.247 kb on - strand, within IAI46_24155at 5148.250 kb on - strand, within IAI46_24155at 5148.374 kb on + strandat 5148.374 kb on + strandat 5148.384 kb on + strandat 5148.385 kb on - strandat 5148.385 kb on - strandat 5148.398 kb on - strandat 5148.493 kb on + strandat 5148.510 kb on - strandat 5148.516 kb on + strandat 5148.516 kb on + strandat 5148.516 kb on + strandat 5148.516 kb on + strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.517 kb on - strandat 5148.518 kb on + strandat 5148.518 kb on + strandat 5148.519 kb on - strandat 5148.519 kb on - strandat 5148.525 kb on + strandat 5148.526 kb on - strandat 5148.526 kb on - strandat 5148.562 kb on + strandat 5148.567 kb on - strandat 5148.602 kb on + strandat 5148.602 kb on + strandat 5148.602 kb on + strandat 5148.603 kb on - strandat 5148.609 kb on + strandat 5148.611 kb on + strandat 5148.611 kb on + strandat 5148.612 kb on - strandat 5148.612 kb on - strandat 5148.619 kb on - strandat 5148.676 kb on - strandat 5148.676 kb on - strandat 5148.677 kb on + strandat 5148.678 kb on - strandat 5148.678 kb on - strandat 5148.678 kb on - strandat 5148.687 kb on - strandat 5148.696 kb on + strandat 5148.698 kb on + strandat 5148.823 kb on + strandat 5148.878 kb on + strandat 5148.907 kb on + strandat 5148.907 kb on + strandat 5148.908 kb on - strandat 5148.909 kb on + strandat 5148.909 kb on + strandat 5148.910 kb on - strandat 5148.910 kb on - strandat 5148.920 kb on + strandat 5148.934 kb on - strandat 5148.934 kb on - strandat 5148.934 kb on - strandat 5148.955 kb on + strandat 5148.961 kb on + strandat 5148.961 kb on + strandat 5148.961 kb on + strandat 5148.998 kb on - strand, within IAI46_24160at 5149.001 kb on + strand, within IAI46_24160at 5149.001 kb on + strand, within IAI46_24160at 5149.002 kb on - strand, within IAI46_24160at 5149.014 kb on + strand, within IAI46_24160at 5149.049 kb on + strand, within IAI46_24160at 5149.050 kb on - strand, within IAI46_24160at 5149.050 kb on - strand, within IAI46_24160at 5149.053 kb on + strand, within IAI46_24160at 5149.054 kb on - strand, within IAI46_24160at 5149.065 kb on + strand, within IAI46_24160at 5149.065 kb on + strand, within IAI46_24160at 5149.065 kb on + strand, within IAI46_24160at 5149.065 kb on + strand, within IAI46_24160at 5149.067 kb on + strand, within IAI46_24160at 5149.207 kb on + strand, within IAI46_24160at 5149.207 kb on + strand, within IAI46_24160at 5149.207 kb on + strand, within IAI46_24160at 5149.208 kb on - strand, within IAI46_24160at 5149.208 kb on - strand, within IAI46_24160at 5149.231 kb on - strand, within IAI46_24160at 5149.231 kb on - strand, within IAI46_24160at 5149.231 kb on - strand, within IAI46_24160

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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5,147,309 - IAI46_24150 0.60 +0.8
5,147,543 + IAI46_24150 0.76 +0.7
5,147,891 - +1.3
5,147,900 + -0.3
5,147,900 + +0.1
5,147,900 + +0.1
5,147,900 + +0.3
5,147,900 + +1.1
5,147,901 - -0.0
5,147,983 - -0.0
5,148,043 + IAI46_24155 0.19 +0.7
5,148,103 - IAI46_24155 0.37 -0.3
5,148,118 + IAI46_24155 0.42 +0.6
5,148,118 + IAI46_24155 0.42 +0.1
5,148,118 + IAI46_24155 0.42 -0.3
5,148,118 + IAI46_24155 0.42 -0.6
5,148,118 + IAI46_24155 0.42 +0.1
5,148,119 - IAI46_24155 0.42 -0.2
5,148,120 + IAI46_24155 0.42 +0.2
5,148,120 + IAI46_24155 0.42 -0.3
5,148,134 + IAI46_24155 0.46 -0.3
5,148,134 + IAI46_24155 0.46 +0.3
5,148,135 - IAI46_24155 0.47 +0.4
5,148,186 + IAI46_24155 0.62 +0.7
5,148,186 + IAI46_24155 0.62 -0.1
5,148,187 - IAI46_24155 0.62 +0.8
5,148,187 - IAI46_24155 0.62 +0.7
5,148,187 - IAI46_24155 0.62 -0.5
5,148,187 - IAI46_24155 0.62 +0.9
5,148,187 - IAI46_24155 0.62 +1.3
5,148,192 + IAI46_24155 0.64 +1.5
5,148,192 + IAI46_24155 0.64 -0.3
5,148,193 - IAI46_24155 0.64 +0.0
5,148,227 + IAI46_24155 0.74 +0.6
5,148,227 + IAI46_24155 0.74 -1.1
5,148,246 + IAI46_24155 0.80 -0.2
5,148,247 - IAI46_24155 0.80 +0.6
5,148,247 - IAI46_24155 0.80 +0.2
5,148,247 - IAI46_24155 0.80 +0.7
5,148,250 - IAI46_24155 0.81 +1.7
5,148,374 + +0.3
5,148,374 + +0.1
5,148,384 + +0.3
5,148,385 - -0.2
5,148,385 - +0.2
5,148,398 - +0.4
5,148,493 + -2.1
5,148,510 - -0.9
5,148,516 + -0.1
5,148,516 + +0.0
5,148,516 + +0.7
5,148,516 + -0.1
5,148,517 - -0.1
5,148,517 - +0.3
5,148,517 - +0.4
5,148,517 - -0.8
5,148,517 - +0.6
5,148,517 - +0.0
5,148,517 - -0.7
5,148,517 - -1.7
5,148,518 + +0.5
5,148,518 + -0.2
5,148,519 - +0.4
5,148,519 - +0.6
5,148,525 + -1.5
5,148,526 - +0.9
5,148,526 - -1.3
5,148,562 + +0.5
5,148,567 - -0.6
5,148,602 + -0.0
5,148,602 + -0.5
5,148,602 + -0.9
5,148,603 - +0.1
5,148,609 + +0.7
5,148,611 + -0.2
5,148,611 + +0.5
5,148,612 - +0.0
5,148,612 - -0.7
5,148,619 - +1.0
5,148,676 - -0.3
5,148,676 - +0.2
5,148,677 + +0.9
5,148,678 - +0.7
5,148,678 - +0.2
5,148,678 - -0.3
5,148,687 - +0.8
5,148,696 + +0.3
5,148,698 + -0.3
5,148,823 + +1.1
5,148,878 + -2.8
5,148,907 + -0.2
5,148,907 + -0.3
5,148,908 - +0.8
5,148,909 + -0.5
5,148,909 + +1.0
5,148,910 - -0.3
5,148,910 - +0.1
5,148,920 + -0.5
5,148,934 - +1.2
5,148,934 - -0.7
5,148,934 - +0.2
5,148,955 + -0.5
5,148,961 + +0.1
5,148,961 + +0.4
5,148,961 + +0.4
5,148,998 - IAI46_24160 0.16 +0.0
5,149,001 + IAI46_24160 0.17 +1.5
5,149,001 + IAI46_24160 0.17 -0.3
5,149,002 - IAI46_24160 0.17 +0.6
5,149,014 + IAI46_24160 0.19 -0.0
5,149,049 + IAI46_24160 0.27 +0.5
5,149,050 - IAI46_24160 0.28 +0.3
5,149,050 - IAI46_24160 0.28 +0.2
5,149,053 + IAI46_24160 0.28 -0.6
5,149,054 - IAI46_24160 0.28 -0.2
5,149,065 + IAI46_24160 0.31 +0.4
5,149,065 + IAI46_24160 0.31 +0.5
5,149,065 + IAI46_24160 0.31 +1.2
5,149,065 + IAI46_24160 0.31 +1.0
5,149,067 + IAI46_24160 0.31 +0.5
5,149,207 + IAI46_24160 0.63 -0.0
5,149,207 + IAI46_24160 0.63 +0.5
5,149,207 + IAI46_24160 0.63 -0.9
5,149,208 - IAI46_24160 0.63 +0.7
5,149,208 - IAI46_24160 0.63 +0.7
5,149,231 - IAI46_24160 0.68 +0.6
5,149,231 - IAI46_24160 0.68 -1.5
5,149,231 - IAI46_24160 0.68 +0.7

Or see this region's nucleotide sequence