Strain Fitness in Serratia liquefaciens MT49 around IAI46_23785

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23770 and IAI46_23775 are separated by 126 nucleotidesIAI46_23775 and IAI46_23780 overlap by 4 nucleotidesIAI46_23780 and IAI46_23785 are separated by 34 nucleotidesIAI46_23785 and IAI46_23790 overlap by 4 nucleotides IAI46_23770: IAI46_23770 - phosphoenolpyruvate carboxykinase (ATP), at 5,054,622 to 5,056,241 _23770 IAI46_23775: IAI46_23775 - plasmid stabilization protein, at 5,056,368 to 5,056,631 _23775 IAI46_23780: IAI46_23780 - type II toxin-antitoxin system VapC family toxin, at 5,056,628 to 5,057,107 _23780 IAI46_23785: IAI46_23785 - two-component system sensor histidine kinase EnvZ, at 5,057,142 to 5,058,512 _23785 IAI46_23790: IAI46_23790 - two-component system response regulator OmpR, at 5,058,509 to 5,059,228 _23790 Position (kb) 5057 5058 5059Strain fitness (log2 ratio) -2 -1 0 1 2at 5056.188 kb on + strandat 5056.189 kb on - strandat 5056.189 kb on - strandat 5056.189 kb on - strandat 5056.240 kb on - strandat 5056.240 kb on - strandat 5056.242 kb on + strandat 5056.253 kb on + strandat 5056.253 kb on + strandat 5056.253 kb on + strandat 5056.265 kb on + strandat 5056.265 kb on + strandat 5056.265 kb on + strandat 5056.265 kb on + strandat 5056.266 kb on - strandat 5056.266 kb on - strandat 5056.328 kb on + strandat 5056.328 kb on + strandat 5056.329 kb on - strandat 5056.329 kb on - strandat 5056.332 kb on - strandat 5056.373 kb on + strandat 5056.374 kb on - strandat 5056.378 kb on + strandat 5056.405 kb on + strand, within IAI46_23775at 5056.406 kb on - strand, within IAI46_23775at 5056.486 kb on + strand, within IAI46_23775at 5056.486 kb on + strand, within IAI46_23775at 5056.627 kb on + strandat 5056.627 kb on + strandat 5056.628 kb on - strandat 5056.628 kb on - strandat 5056.643 kb on - strandat 5056.682 kb on + strand, within IAI46_23780at 5056.682 kb on + strand, within IAI46_23780at 5056.682 kb on + strand, within IAI46_23780at 5056.683 kb on - strand, within IAI46_23780at 5056.683 kb on - strand, within IAI46_23780at 5056.683 kb on - strand, within IAI46_23780at 5056.683 kb on - strand, within IAI46_23780at 5056.684 kb on + strand, within IAI46_23780at 5056.684 kb on + strand, within IAI46_23780at 5056.684 kb on + strand, within IAI46_23780at 5056.685 kb on - strand, within IAI46_23780at 5056.685 kb on - strand, within IAI46_23780at 5056.685 kb on - strand, within IAI46_23780at 5056.727 kb on + strand, within IAI46_23780at 5056.727 kb on + strand, within IAI46_23780at 5056.728 kb on - strand, within IAI46_23780at 5056.740 kb on + strand, within IAI46_23780at 5056.741 kb on - strand, within IAI46_23780at 5056.741 kb on - strand, within IAI46_23780at 5056.741 kb on - strand, within IAI46_23780at 5056.741 kb on - strand, within IAI46_23780at 5056.741 kb on - strand, within IAI46_23780at 5056.775 kb on - strand, within IAI46_23780at 5056.864 kb on + strand, within IAI46_23780at 5056.884 kb on - strand, within IAI46_23780at 5056.967 kb on + strand, within IAI46_23780at 5056.968 kb on - strand, within IAI46_23780at 5056.968 kb on - strand, within IAI46_23780at 5056.993 kb on + strand, within IAI46_23780at 5057.081 kb on + strandat 5057.081 kb on + strandat 5057.084 kb on + strandat 5057.084 kb on + strandat 5057.085 kb on - strandat 5057.085 kb on - strandat 5057.085 kb on - strandat 5057.143 kb on + strandat 5057.144 kb on - strandat 5057.208 kb on - strandat 5057.208 kb on - strandat 5057.208 kb on - strandat 5057.208 kb on - strandat 5057.208 kb on - strandat 5057.209 kb on + strandat 5057.209 kb on + strandat 5057.279 kb on + strand, within IAI46_23785at 5057.279 kb on + strand, within IAI46_23785at 5057.280 kb on - strand, within IAI46_23785at 5057.280 kb on - strand, within IAI46_23785at 5057.280 kb on - strand, within IAI46_23785at 5057.280 kb on - strand, within IAI46_23785at 5057.280 kb on - strand, within IAI46_23785at 5057.286 kb on + strand, within IAI46_23785at 5057.287 kb on - strand, within IAI46_23785at 5057.378 kb on + strand, within IAI46_23785at 5057.483 kb on + strand, within IAI46_23785at 5057.483 kb on + strand, within IAI46_23785at 5057.484 kb on - strand, within IAI46_23785at 5057.569 kb on + strand, within IAI46_23785at 5057.570 kb on - strand, within IAI46_23785at 5057.654 kb on - strand, within IAI46_23785at 5057.660 kb on + strand, within IAI46_23785at 5057.693 kb on + strand, within IAI46_23785at 5057.694 kb on - strand, within IAI46_23785at 5057.699 kb on + strand, within IAI46_23785at 5057.700 kb on - strand, within IAI46_23785at 5057.720 kb on - strand, within IAI46_23785at 5057.890 kb on + strand, within IAI46_23785at 5057.973 kb on - strand, within IAI46_23785at 5057.997 kb on + strand, within IAI46_23785at 5057.997 kb on + strand, within IAI46_23785at 5057.997 kb on + strand, within IAI46_23785at 5057.998 kb on - strand, within IAI46_23785at 5057.998 kb on - strand, within IAI46_23785at 5058.011 kb on + strand, within IAI46_23785at 5058.012 kb on - strand, within IAI46_23785at 5058.023 kb on + strand, within IAI46_23785at 5058.024 kb on - strand, within IAI46_23785at 5058.024 kb on - strand, within IAI46_23785at 5058.024 kb on - strand, within IAI46_23785at 5058.024 kb on - strand, within IAI46_23785at 5058.200 kb on - strand, within IAI46_23785at 5058.200 kb on - strand, within IAI46_23785at 5058.311 kb on + strand, within IAI46_23785at 5058.311 kb on + strand, within IAI46_23785at 5058.311 kb on + strand, within IAI46_23785at 5058.312 kb on - strand, within IAI46_23785at 5058.347 kb on + strand, within IAI46_23785at 5058.347 kb on + strand, within IAI46_23785at 5058.358 kb on + strand, within IAI46_23785at 5058.358 kb on + strand, within IAI46_23785at 5058.372 kb on - strand, within IAI46_23785at 5058.372 kb on - strand, within IAI46_23785at 5058.372 kb on - strand, within IAI46_23785at 5058.422 kb on - strandat 5058.462 kb on + strandat 5058.463 kb on - strandat 5058.463 kb on - strandat 5058.540 kb on + strandat 5058.541 kb on - strandat 5058.568 kb on - strandat 5058.648 kb on + strand, within IAI46_23790at 5058.649 kb on - strand, within IAI46_23790at 5058.755 kb on - strand, within IAI46_23790at 5058.755 kb on - strand, within IAI46_23790at 5058.805 kb on + strand, within IAI46_23790at 5058.924 kb on + strand, within IAI46_23790at 5058.925 kb on - strand, within IAI46_23790at 5058.925 kb on - strand, within IAI46_23790at 5058.925 kb on - strand, within IAI46_23790at 5058.925 kb on - strand, within IAI46_23790at 5058.988 kb on + strand, within IAI46_23790at 5058.988 kb on + strand, within IAI46_23790at 5058.988 kb on + strand, within IAI46_23790at 5058.989 kb on - strand, within IAI46_23790at 5059.127 kb on + strand, within IAI46_23790at 5059.128 kb on - strand, within IAI46_23790at 5059.158 kb on - strandat 5059.170 kb on - strandat 5059.231 kb on + strandat 5059.231 kb on + strandat 5059.231 kb on + strandat 5059.231 kb on + strandat 5059.232 kb on - strandat 5059.232 kb on - strandat 5059.232 kb on - strandat 5059.232 kb on - strandat 5059.234 kb on + strandat 5059.265 kb on + strandat 5059.265 kb on + strandat 5059.266 kb on - strandat 5059.266 kb on - strandat 5059.300 kb on + strandat 5059.306 kb on + strandat 5059.306 kb on + strandat 5059.307 kb on - strandat 5059.308 kb on + strandat 5059.308 kb on + strandat 5059.308 kb on + strandat 5059.308 kb on + strandat 5059.308 kb on + strandat 5059.309 kb on - strandat 5059.309 kb on - strandat 5059.309 kb on - strandat 5059.310 kb on + strandat 5059.310 kb on + strandat 5059.311 kb on - strandat 5059.311 kb on - strandat 5059.311 kb on - strandat 5059.311 kb on - strandat 5059.408 kb on + strandat 5059.408 kb on + strandat 5059.409 kb on - strandat 5059.414 kb on - strandat 5059.420 kb on - strandat 5059.473 kb on + strandat 5059.473 kb on + strandat 5059.473 kb on + strandat 5059.474 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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5,056,188 + -0.3
5,056,189 - +1.0
5,056,189 - +1.5
5,056,189 - +0.0
5,056,240 - -0.0
5,056,240 - +1.1
5,056,242 + -0.0
5,056,253 + -0.6
5,056,253 + -0.2
5,056,253 + +0.0
5,056,265 + -0.1
5,056,265 + +0.2
5,056,265 + +0.2
5,056,265 + +0.1
5,056,266 - +0.1
5,056,266 - +0.1
5,056,328 + -0.7
5,056,328 + -1.1
5,056,329 - +0.0
5,056,329 - +0.6
5,056,332 - +0.2
5,056,373 + +0.1
5,056,374 - -0.6
5,056,378 + -0.2
5,056,405 + IAI46_23775 0.14 -0.1
5,056,406 - IAI46_23775 0.14 -0.8
5,056,486 + IAI46_23775 0.45 +0.7
5,056,486 + IAI46_23775 0.45 +0.2
5,056,627 + +0.2
5,056,627 + -0.5
5,056,628 - +1.8
5,056,628 - -0.3
5,056,643 - +0.8
5,056,682 + IAI46_23780 0.11 -0.7
5,056,682 + IAI46_23780 0.11 -0.3
5,056,682 + IAI46_23780 0.11 -0.1
5,056,683 - IAI46_23780 0.11 +0.3
5,056,683 - IAI46_23780 0.11 +1.2
5,056,683 - IAI46_23780 0.11 -0.4
5,056,683 - IAI46_23780 0.11 +0.3
5,056,684 + IAI46_23780 0.12 +0.3
5,056,684 + IAI46_23780 0.12 +0.2
5,056,684 + IAI46_23780 0.12 -0.1
5,056,685 - IAI46_23780 0.12 +0.6
5,056,685 - IAI46_23780 0.12 +0.3
5,056,685 - IAI46_23780 0.12 -0.4
5,056,727 + IAI46_23780 0.21 +1.4
5,056,727 + IAI46_23780 0.21 -0.7
5,056,728 - IAI46_23780 0.21 +0.9
5,056,740 + IAI46_23780 0.23 -0.0
5,056,741 - IAI46_23780 0.24 +0.5
5,056,741 - IAI46_23780 0.24 +0.8
5,056,741 - IAI46_23780 0.24 +0.4
5,056,741 - IAI46_23780 0.24 +0.1
5,056,741 - IAI46_23780 0.24 -0.4
5,056,775 - IAI46_23780 0.31 -0.4
5,056,864 + IAI46_23780 0.49 +0.1
5,056,884 - IAI46_23780 0.53 -0.9
5,056,967 + IAI46_23780 0.71 -0.5
5,056,968 - IAI46_23780 0.71 -0.5
5,056,968 - IAI46_23780 0.71 +0.2
5,056,993 + IAI46_23780 0.76 +1.2
5,057,081 + -0.2
5,057,081 + +0.7
5,057,084 + +0.4
5,057,084 + +0.7
5,057,085 - +0.6
5,057,085 - -0.3
5,057,085 - +0.6
5,057,143 + -1.7
5,057,144 - +0.4
5,057,208 - +0.9
5,057,208 - +0.7
5,057,208 - +0.5
5,057,208 - -0.3
5,057,208 - +0.0
5,057,209 + +0.6
5,057,209 + +0.4
5,057,279 + IAI46_23785 0.10 +1.0
5,057,279 + IAI46_23785 0.10 -0.0
5,057,280 - IAI46_23785 0.10 -0.5
5,057,280 - IAI46_23785 0.10 -0.4
5,057,280 - IAI46_23785 0.10 +0.2
5,057,280 - IAI46_23785 0.10 +0.1
5,057,280 - IAI46_23785 0.10 +0.1
5,057,286 + IAI46_23785 0.11 -0.6
5,057,287 - IAI46_23785 0.11 +0.1
5,057,378 + IAI46_23785 0.17 -1.9
5,057,483 + IAI46_23785 0.25 -0.1
5,057,483 + IAI46_23785 0.25 -0.4
5,057,484 - IAI46_23785 0.25 -0.2
5,057,569 + IAI46_23785 0.31 -1.7
5,057,570 - IAI46_23785 0.31 -0.4
5,057,654 - IAI46_23785 0.37 +0.6
5,057,660 + IAI46_23785 0.38 -1.1
5,057,693 + IAI46_23785 0.40 -0.8
5,057,694 - IAI46_23785 0.40 +0.0
5,057,699 + IAI46_23785 0.41 -0.3
5,057,700 - IAI46_23785 0.41 +0.6
5,057,720 - IAI46_23785 0.42 +0.8
5,057,890 + IAI46_23785 0.55 +0.8
5,057,973 - IAI46_23785 0.61 -0.1
5,057,997 + IAI46_23785 0.62 -0.4
5,057,997 + IAI46_23785 0.62 -1.9
5,057,997 + IAI46_23785 0.62 -0.6
5,057,998 - IAI46_23785 0.62 -1.2
5,057,998 - IAI46_23785 0.62 -0.8
5,058,011 + IAI46_23785 0.63 +1.3
5,058,012 - IAI46_23785 0.63 -0.0
5,058,023 + IAI46_23785 0.64 -1.8
5,058,024 - IAI46_23785 0.64 +0.4
5,058,024 - IAI46_23785 0.64 -1.1
5,058,024 - IAI46_23785 0.64 -0.5
5,058,024 - IAI46_23785 0.64 +0.1
5,058,200 - IAI46_23785 0.77 -1.1
5,058,200 - IAI46_23785 0.77 -0.2
5,058,311 + IAI46_23785 0.85 -0.7
5,058,311 + IAI46_23785 0.85 +0.8
5,058,311 + IAI46_23785 0.85 +0.3
5,058,312 - IAI46_23785 0.85 -0.8
5,058,347 + IAI46_23785 0.88 -0.5
5,058,347 + IAI46_23785 0.88 -0.3
5,058,358 + IAI46_23785 0.89 -0.6
5,058,358 + IAI46_23785 0.89 -1.6
5,058,372 - IAI46_23785 0.90 -0.2
5,058,372 - IAI46_23785 0.90 -0.2
5,058,372 - IAI46_23785 0.90 -0.8
5,058,422 - -0.1
5,058,462 + -0.3
5,058,463 - -2.1
5,058,463 - +0.4
5,058,540 + -0.6
5,058,541 - -2.1
5,058,568 - +0.0
5,058,648 + IAI46_23790 0.19 -1.0
5,058,649 - IAI46_23790 0.19 -0.4
5,058,755 - IAI46_23790 0.34 -1.2
5,058,755 - IAI46_23790 0.34 -1.9
5,058,805 + IAI46_23790 0.41 -0.4
5,058,924 + IAI46_23790 0.58 -1.2
5,058,925 - IAI46_23790 0.58 -0.6
5,058,925 - IAI46_23790 0.58 +1.4
5,058,925 - IAI46_23790 0.58 -2.4
5,058,925 - IAI46_23790 0.58 -1.1
5,058,988 + IAI46_23790 0.67 -1.1
5,058,988 + IAI46_23790 0.67 -0.9
5,058,988 + IAI46_23790 0.67 +0.3
5,058,989 - IAI46_23790 0.67 -1.0
5,059,127 + IAI46_23790 0.86 -0.9
5,059,128 - IAI46_23790 0.86 +0.3
5,059,158 - -1.6
5,059,170 - +0.3
5,059,231 + -0.6
5,059,231 + -0.9
5,059,231 + -0.2
5,059,231 + -0.6
5,059,232 - -2.1
5,059,232 - -0.7
5,059,232 - -1.4
5,059,232 - -0.7
5,059,234 + +0.6
5,059,265 + -0.3
5,059,265 + -1.9
5,059,266 - +0.6
5,059,266 - -1.1
5,059,300 + +0.4
5,059,306 + +0.2
5,059,306 + +1.2
5,059,307 - +0.2
5,059,308 + +0.3
5,059,308 + +0.1
5,059,308 + -0.3
5,059,308 + +0.3
5,059,308 + +0.5
5,059,309 - -0.8
5,059,309 - -0.5
5,059,309 - -0.5
5,059,310 + +1.2
5,059,310 + +0.6
5,059,311 - +0.5
5,059,311 - -0.2
5,059,311 - +0.1
5,059,311 - +0.8
5,059,408 + +0.5
5,059,408 + +0.3
5,059,409 - +0.8
5,059,414 - -1.1
5,059,420 - +0.7
5,059,473 + -0.1
5,059,473 + -0.4
5,059,473 + -0.1
5,059,474 - -0.3

Or see this region's nucleotide sequence