Strain Fitness in Serratia liquefaciens MT49 around IAI46_19280

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19275 and IAI46_19280 are separated by 47 nucleotidesIAI46_19280 and IAI46_19285 overlap by 11 nucleotidesIAI46_19285 and IAI46_19290 are separated by 85 nucleotides IAI46_19275: IAI46_19275 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 4,068,710 to 4,069,831 _19275 IAI46_19280: IAI46_19280 - cytoskeleton protein RodZ, at 4,069,879 to 4,070,856 _19280 IAI46_19285: IAI46_19285 - type IV pilus biogenesis/stability protein PilW, at 4,070,846 to 4,071,595 _19285 IAI46_19290: IAI46_19290 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 4,071,681 to 4,072,877 _19290 Position (kb) 4069 4070 4071Strain fitness (log2 ratio) -1 0 1at 4069.934 kb on - strandat 4069.967 kb on - strandat 4070.052 kb on - strand, within IAI46_19280at 4070.369 kb on - strand, within IAI46_19280at 4070.655 kb on - strand, within IAI46_19280at 4070.667 kb on - strand, within IAI46_19280at 4070.667 kb on - strand, within IAI46_19280at 4070.851 kb on - strandat 4070.851 kb on - strandat 4070.862 kb on - strandat 4070.862 kb on - strandat 4070.930 kb on - strand, within IAI46_19285at 4070.973 kb on - strand, within IAI46_19285at 4071.007 kb on - strand, within IAI46_19285at 4071.007 kb on - strand, within IAI46_19285at 4071.011 kb on - strand, within IAI46_19285at 4071.011 kb on - strand, within IAI46_19285at 4071.117 kb on - strand, within IAI46_19285at 4071.117 kb on - strand, within IAI46_19285at 4071.163 kb on - strand, within IAI46_19285at 4071.247 kb on - strand, within IAI46_19285at 4071.247 kb on - strand, within IAI46_19285at 4071.247 kb on - strand, within IAI46_19285at 4071.247 kb on - strand, within IAI46_19285at 4071.247 kb on - strand, within IAI46_19285at 4071.247 kb on - strand, within IAI46_19285at 4071.247 kb on - strand, within IAI46_19285at 4071.277 kb on - strand, within IAI46_19285at 4071.277 kb on - strand, within IAI46_19285at 4071.280 kb on + strand, within IAI46_19285at 4071.370 kb on - strand, within IAI46_19285at 4071.370 kb on - strand, within IAI46_19285at 4071.396 kb on + strand, within IAI46_19285at 4071.469 kb on - strand, within IAI46_19285at 4071.575 kb on - strandat 4071.674 kb on - strandat 4071.674 kb on - strandat 4071.674 kb on - strandat 4071.674 kb on - strandat 4071.731 kb on + strandat 4071.812 kb on + strand, within IAI46_19290at 4071.813 kb on - strand, within IAI46_19290at 4071.819 kb on - strand, within IAI46_19290

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,069,934 - +0.7
4,069,967 - +0.3
4,070,052 - IAI46_19280 0.18 +0.3
4,070,369 - IAI46_19280 0.50 +0.3
4,070,655 - IAI46_19280 0.79 -1.1
4,070,667 - IAI46_19280 0.81 -0.3
4,070,667 - IAI46_19280 0.81 -1.4
4,070,851 - +0.0
4,070,851 - -0.3
4,070,862 - +0.7
4,070,862 - +0.8
4,070,930 - IAI46_19285 0.11 +0.3
4,070,973 - IAI46_19285 0.17 +0.7
4,071,007 - IAI46_19285 0.21 +1.2
4,071,007 - IAI46_19285 0.21 +0.3
4,071,011 - IAI46_19285 0.22 -1.6
4,071,011 - IAI46_19285 0.22 +1.1
4,071,117 - IAI46_19285 0.36 -0.0
4,071,117 - IAI46_19285 0.36 -1.6
4,071,163 - IAI46_19285 0.42 +0.0
4,071,247 - IAI46_19285 0.53 +0.6
4,071,247 - IAI46_19285 0.53 +0.1
4,071,247 - IAI46_19285 0.53 +0.2
4,071,247 - IAI46_19285 0.53 +0.7
4,071,247 - IAI46_19285 0.53 +0.1
4,071,247 - IAI46_19285 0.53 +0.3
4,071,247 - IAI46_19285 0.53 +0.0
4,071,277 - IAI46_19285 0.57 +0.3
4,071,277 - IAI46_19285 0.57 +0.2
4,071,280 + IAI46_19285 0.58 -1.0
4,071,370 - IAI46_19285 0.70 -0.8
4,071,370 - IAI46_19285 0.70 +0.2
4,071,396 + IAI46_19285 0.73 -0.2
4,071,469 - IAI46_19285 0.83 -0.5
4,071,575 - -0.3
4,071,674 - +0.2
4,071,674 - +1.0
4,071,674 - +0.7
4,071,674 - -0.5
4,071,731 + +0.6
4,071,812 + IAI46_19290 0.11 +0.1
4,071,813 - IAI46_19290 0.11 +0.1
4,071,819 - IAI46_19290 0.12 -0.2

Or see this region's nucleotide sequence