Strain Fitness in Serratia liquefaciens MT49 around IAI46_19045

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19040 and IAI46_19045 are separated by 145 nucleotidesIAI46_19045 and IAI46_19050 are separated by 205 nucleotides IAI46_19040: IAI46_19040 - D-mannonate oxidoreductase, at 4,017,930 to 4,019,423 _19040 IAI46_19045: IAI46_19045 - GntR family transcriptional regulator, at 4,019,569 to 4,020,255 _19045 IAI46_19050: IAI46_19050 - class I fructose-bisphosphate aldolase, at 4,020,461 to 4,021,510 _19050 Position (kb) 4019 4020 4021Strain fitness (log2 ratio) -2 -1 0 1 2at 4018.717 kb on + strand, within IAI46_19040at 4018.718 kb on - strand, within IAI46_19040at 4018.718 kb on - strand, within IAI46_19040at 4018.718 kb on - strand, within IAI46_19040at 4018.724 kb on + strand, within IAI46_19040at 4018.725 kb on - strand, within IAI46_19040at 4018.725 kb on - strand, within IAI46_19040at 4018.725 kb on - strand, within IAI46_19040at 4018.791 kb on + strand, within IAI46_19040at 4018.792 kb on - strand, within IAI46_19040at 4018.851 kb on + strand, within IAI46_19040at 4018.978 kb on - strand, within IAI46_19040at 4019.155 kb on - strand, within IAI46_19040at 4019.302 kb on + strandat 4019.314 kb on + strandat 4019.314 kb on + strandat 4019.315 kb on - strandat 4019.315 kb on - strandat 4019.315 kb on - strandat 4019.344 kb on - strandat 4019.473 kb on + strandat 4019.473 kb on + strandat 4019.473 kb on + strandat 4019.474 kb on - strandat 4019.474 kb on - strandat 4019.474 kb on - strandat 4019.474 kb on - strandat 4019.478 kb on + strandat 4019.479 kb on - strandat 4019.479 kb on - strandat 4019.479 kb on - strandat 4019.479 kb on - strandat 4019.482 kb on - strandat 4019.524 kb on + strandat 4019.524 kb on + strandat 4019.525 kb on - strandat 4019.525 kb on - strandat 4019.527 kb on + strandat 4019.527 kb on + strandat 4019.528 kb on - strandat 4019.528 kb on - strandat 4019.556 kb on - strandat 4019.581 kb on + strandat 4019.590 kb on - strandat 4019.621 kb on - strandat 4019.736 kb on + strand, within IAI46_19045at 4019.736 kb on + strand, within IAI46_19045at 4019.997 kb on - strand, within IAI46_19045at 4020.122 kb on - strand, within IAI46_19045at 4020.216 kb on + strandat 4020.217 kb on - strandat 4020.222 kb on + strandat 4020.231 kb on + strandat 4020.232 kb on - strandat 4020.253 kb on + strandat 4020.293 kb on + strandat 4020.294 kb on - strandat 4020.363 kb on - strandat 4020.363 kb on - strandat 4020.363 kb on - strandat 4020.365 kb on + strandat 4020.365 kb on + strandat 4020.366 kb on - strandat 4020.366 kb on - strandat 4020.366 kb on - strandat 4020.373 kb on + strandat 4020.374 kb on - strandat 4020.374 kb on - strandat 4020.399 kb on + strandat 4020.415 kb on + strandat 4020.416 kb on - strandat 4020.416 kb on - strandat 4020.420 kb on + strandat 4020.421 kb on - strandat 4020.421 kb on - strandat 4020.421 kb on - strandat 4020.421 kb on - strandat 4020.433 kb on + strandat 4020.456 kb on + strandat 4020.456 kb on + strandat 4020.456 kb on + strandat 4020.457 kb on - strandat 4020.469 kb on + strandat 4020.469 kb on + strandat 4020.484 kb on - strandat 4020.520 kb on + strandat 4020.521 kb on - strandat 4020.521 kb on - strandat 4020.524 kb on - strandat 4020.524 kb on - strandat 4020.524 kb on - strandat 4020.545 kb on + strandat 4020.586 kb on + strand, within IAI46_19050at 4020.631 kb on + strand, within IAI46_19050at 4020.631 kb on + strand, within IAI46_19050at 4020.667 kb on + strand, within IAI46_19050at 4020.668 kb on - strand, within IAI46_19050at 4020.731 kb on + strand, within IAI46_19050at 4020.731 kb on + strand, within IAI46_19050at 4020.797 kb on + strand, within IAI46_19050at 4020.797 kb on + strand, within IAI46_19050at 4020.798 kb on - strand, within IAI46_19050at 4020.798 kb on - strand, within IAI46_19050at 4020.865 kb on + strand, within IAI46_19050at 4020.865 kb on + strand, within IAI46_19050at 4020.893 kb on + strand, within IAI46_19050at 4020.961 kb on + strand, within IAI46_19050at 4020.962 kb on - strand, within IAI46_19050at 4020.965 kb on + strand, within IAI46_19050at 4021.040 kb on - strand, within IAI46_19050at 4021.101 kb on - strand, within IAI46_19050at 4021.101 kb on - strand, within IAI46_19050at 4021.101 kb on - strand, within IAI46_19050at 4021.150 kb on + strand, within IAI46_19050at 4021.169 kb on - strand, within IAI46_19050at 4021.222 kb on + strand, within IAI46_19050at 4021.248 kb on + strand, within IAI46_19050at 4021.249 kb on - strand, within IAI46_19050at 4021.252 kb on + strand, within IAI46_19050at 4021.253 kb on - strand, within IAI46_19050at 4021.253 kb on - strand, within IAI46_19050

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,018,717 + IAI46_19040 0.53 -0.2
4,018,718 - IAI46_19040 0.53 -0.6
4,018,718 - IAI46_19040 0.53 -1.1
4,018,718 - IAI46_19040 0.53 +1.0
4,018,724 + IAI46_19040 0.53 -0.2
4,018,725 - IAI46_19040 0.53 +0.5
4,018,725 - IAI46_19040 0.53 +0.2
4,018,725 - IAI46_19040 0.53 -0.1
4,018,791 + IAI46_19040 0.58 +0.4
4,018,792 - IAI46_19040 0.58 -0.8
4,018,851 + IAI46_19040 0.62 +0.2
4,018,978 - IAI46_19040 0.70 -0.6
4,019,155 - IAI46_19040 0.82 +0.0
4,019,302 + +0.7
4,019,314 + +0.3
4,019,314 + +1.3
4,019,315 - -1.8
4,019,315 - -0.1
4,019,315 - +0.4
4,019,344 - +0.3
4,019,473 + -0.5
4,019,473 + -0.2
4,019,473 + -0.4
4,019,474 - +0.5
4,019,474 - +0.8
4,019,474 - +0.3
4,019,474 - +0.3
4,019,478 + +0.2
4,019,479 - -0.0
4,019,479 - -1.5
4,019,479 - +1.6
4,019,479 - -0.1
4,019,482 - -0.2
4,019,524 + +0.6
4,019,524 + +0.2
4,019,525 - -0.3
4,019,525 - +0.1
4,019,527 + +0.9
4,019,527 + -0.7
4,019,528 - -0.1
4,019,528 - +0.6
4,019,556 - -0.7
4,019,581 + +0.4
4,019,590 - -0.3
4,019,621 - +1.2
4,019,736 + IAI46_19045 0.24 +1.1
4,019,736 + IAI46_19045 0.24 -0.5
4,019,997 - IAI46_19045 0.62 -0.2
4,020,122 - IAI46_19045 0.80 +0.4
4,020,216 + -0.2
4,020,217 - -1.0
4,020,222 + -0.3
4,020,231 + +0.2
4,020,232 - +0.3
4,020,253 + +0.3
4,020,293 + +0.5
4,020,294 - -0.3
4,020,363 - -0.9
4,020,363 - -0.2
4,020,363 - +0.6
4,020,365 + -0.2
4,020,365 + +1.2
4,020,366 - -0.1
4,020,366 - +0.2
4,020,366 - +1.3
4,020,373 + +0.7
4,020,374 - -0.7
4,020,374 - +0.2
4,020,399 + +0.1
4,020,415 + +0.6
4,020,416 - -0.3
4,020,416 - +0.6
4,020,420 + -0.0
4,020,421 - +0.5
4,020,421 - +0.4
4,020,421 - -0.6
4,020,421 - +0.2
4,020,433 + -0.2
4,020,456 + +1.1
4,020,456 + +0.1
4,020,456 + -0.5
4,020,457 - +0.0
4,020,469 + +0.1
4,020,469 + -0.3
4,020,484 - +0.6
4,020,520 + +0.6
4,020,521 - +0.1
4,020,521 - +0.0
4,020,524 - -1.4
4,020,524 - +0.0
4,020,524 - +0.2
4,020,545 + -0.2
4,020,586 + IAI46_19050 0.12 +0.0
4,020,631 + IAI46_19050 0.16 -0.8
4,020,631 + IAI46_19050 0.16 -0.1
4,020,667 + IAI46_19050 0.20 -0.2
4,020,668 - IAI46_19050 0.20 -0.2
4,020,731 + IAI46_19050 0.26 +0.8
4,020,731 + IAI46_19050 0.26 -1.5
4,020,797 + IAI46_19050 0.32 -0.8
4,020,797 + IAI46_19050 0.32 +0.9
4,020,798 - IAI46_19050 0.32 -0.2
4,020,798 - IAI46_19050 0.32 -0.7
4,020,865 + IAI46_19050 0.38 +2.4
4,020,865 + IAI46_19050 0.38 +0.1
4,020,893 + IAI46_19050 0.41 +0.1
4,020,961 + IAI46_19050 0.48 +0.4
4,020,962 - IAI46_19050 0.48 -0.1
4,020,965 + IAI46_19050 0.48 -0.5
4,021,040 - IAI46_19050 0.55 +0.4
4,021,101 - IAI46_19050 0.61 +0.8
4,021,101 - IAI46_19050 0.61 -0.1
4,021,101 - IAI46_19050 0.61 +0.4
4,021,150 + IAI46_19050 0.66 +0.0
4,021,169 - IAI46_19050 0.67 -0.8
4,021,222 + IAI46_19050 0.72 +0.6
4,021,248 + IAI46_19050 0.75 +1.2
4,021,249 - IAI46_19050 0.75 -0.0
4,021,252 + IAI46_19050 0.75 -0.6
4,021,253 - IAI46_19050 0.75 +0.7
4,021,253 - IAI46_19050 0.75 +0.5

Or see this region's nucleotide sequence