Experiment: dichromate 20 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_18775 and IAI46_18780 are separated by 16 nucleotides IAI46_18780 and IAI46_18785 are separated by 101 nucleotides IAI46_18785 and IAI46_18790 are separated by 2 nucleotides
IAI46_18775: IAI46_18775 - outer membrane protein assembly factor BamC, at 3,954,247 to 3,955,299
_18775
IAI46_18780: IAI46_18780 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,955,316 to 3,956,197
_18780
IAI46_18785: IAI46_18785 - glycine cleavage system transcriptional repressor, at 3,956,299 to 3,956,913
_18785
IAI46_18790: IAI46_18790 - thioredoxin-dependent thiol peroxidase, at 3,956,916 to 3,957,380
_18790
Position (kb)
3955
3956
3957 Strain fitness (log2 ratio)
-1
0
1 at 3954.330 kb on + strand at 3954.330 kb on + strand at 3954.340 kb on - strand at 3954.386 kb on + strand, within IAI46_18775 at 3954.387 kb on - strand, within IAI46_18775 at 3954.387 kb on - strand, within IAI46_18775 at 3954.455 kb on + strand, within IAI46_18775 at 3954.551 kb on + strand, within IAI46_18775 at 3954.552 kb on - strand, within IAI46_18775 at 3954.565 kb on + strand, within IAI46_18775 at 3954.701 kb on + strand, within IAI46_18775 at 3954.701 kb on + strand, within IAI46_18775 at 3954.828 kb on - strand, within IAI46_18775 at 3954.913 kb on - strand, within IAI46_18775 at 3955.004 kb on + strand, within IAI46_18775 at 3955.004 kb on + strand, within IAI46_18775 at 3955.005 kb on - strand, within IAI46_18775 at 3955.106 kb on + strand, within IAI46_18775 at 3955.107 kb on - strand, within IAI46_18775 at 3955.134 kb on + strand, within IAI46_18775 at 3955.135 kb on - strand, within IAI46_18775 at 3955.242 kb on + strand at 3955.243 kb on - strand at 3955.311 kb on + strand at 3955.318 kb on - strand at 3955.385 kb on - strand at 3955.399 kb on + strand at 3955.426 kb on + strand, within IAI46_18780 at 3955.698 kb on - strand, within IAI46_18780 at 3955.698 kb on - strand, within IAI46_18780 at 3955.718 kb on - strand, within IAI46_18780 at 3955.729 kb on + strand, within IAI46_18780 at 3955.730 kb on - strand, within IAI46_18780 at 3955.730 kb on - strand, within IAI46_18780 at 3955.799 kb on - strand, within IAI46_18780 at 3955.799 kb on - strand, within IAI46_18780 at 3955.801 kb on - strand, within IAI46_18780 at 3955.852 kb on - strand, within IAI46_18780 at 3955.878 kb on + strand, within IAI46_18780 at 3955.882 kb on - strand, within IAI46_18780 at 3955.882 kb on - strand, within IAI46_18780 at 3955.882 kb on - strand, within IAI46_18780 at 3955.908 kb on - strand, within IAI46_18780 at 3956.019 kb on - strand, within IAI46_18780 at 3956.102 kb on + strand, within IAI46_18780 at 3956.103 kb on - strand, within IAI46_18780 at 3956.103 kb on - strand, within IAI46_18780 at 3956.109 kb on + strand at 3956.168 kb on - strand at 3956.182 kb on + strand at 3956.183 kb on - strand at 3956.192 kb on - strand at 3956.273 kb on + strand at 3956.273 kb on + strand at 3956.304 kb on + strand at 3956.366 kb on - strand, within IAI46_18785 at 3956.366 kb on - strand, within IAI46_18785 at 3956.457 kb on + strand, within IAI46_18785 at 3956.526 kb on + strand, within IAI46_18785 at 3956.767 kb on + strand, within IAI46_18785 at 3956.841 kb on + strand, within IAI46_18785 at 3956.842 kb on - strand, within IAI46_18785 at 3956.865 kb on + strand at 3956.866 kb on - strand at 3956.866 kb on - strand at 3956.868 kb on + strand at 3956.868 kb on + strand at 3956.869 kb on - strand at 3956.869 kb on - strand at 3956.869 kb on - strand at 3956.882 kb on - strand at 3956.911 kb on + strand at 3956.912 kb on - strand at 3957.021 kb on + strand, within IAI46_18790 at 3957.021 kb on + strand, within IAI46_18790 at 3957.053 kb on + strand, within IAI46_18790 at 3957.134 kb on + strand, within IAI46_18790
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic remove 3,954,330 + -0.1 3,954,330 + +0.5 3,954,340 - -0.4 3,954,386 + IAI46_18775 0.13 +0.6 3,954,387 - IAI46_18775 0.13 +0.9 3,954,387 - IAI46_18775 0.13 -0.8 3,954,455 + IAI46_18775 0.20 -0.8 3,954,551 + IAI46_18775 0.29 +1.2 3,954,552 - IAI46_18775 0.29 -0.1 3,954,565 + IAI46_18775 0.30 -1.4 3,954,701 + IAI46_18775 0.43 +0.4 3,954,701 + IAI46_18775 0.43 +0.0 3,954,828 - IAI46_18775 0.55 +0.4 3,954,913 - IAI46_18775 0.63 +0.1 3,955,004 + IAI46_18775 0.72 +1.1 3,955,004 + IAI46_18775 0.72 -0.6 3,955,005 - IAI46_18775 0.72 +0.0 3,955,106 + IAI46_18775 0.82 -1.1 3,955,107 - IAI46_18775 0.82 -0.2 3,955,134 + IAI46_18775 0.84 +0.9 3,955,135 - IAI46_18775 0.84 -0.9 3,955,242 + +0.0 3,955,243 - -0.1 3,955,311 + -0.3 3,955,318 - +0.0 3,955,385 - -0.9 3,955,399 + -0.4 3,955,426 + IAI46_18780 0.12 -0.4 3,955,698 - IAI46_18780 0.43 +0.1 3,955,698 - IAI46_18780 0.43 +1.0 3,955,718 - IAI46_18780 0.46 -0.7 3,955,729 + IAI46_18780 0.47 +0.1 3,955,730 - IAI46_18780 0.47 +0.6 3,955,730 - IAI46_18780 0.47 +0.3 3,955,799 - IAI46_18780 0.55 +0.2 3,955,799 - IAI46_18780 0.55 -1.6 3,955,801 - IAI46_18780 0.55 -0.1 3,955,852 - IAI46_18780 0.61 +0.5 3,955,878 + IAI46_18780 0.64 -0.9 3,955,882 - IAI46_18780 0.64 +0.3 3,955,882 - IAI46_18780 0.64 +0.1 3,955,882 - IAI46_18780 0.64 +0.7 3,955,908 - IAI46_18780 0.67 -0.1 3,956,019 - IAI46_18780 0.80 -1.5 3,956,102 + IAI46_18780 0.89 +0.2 3,956,103 - IAI46_18780 0.89 -0.5 3,956,103 - IAI46_18780 0.89 +0.2 3,956,109 + -1.0 3,956,168 - +0.2 3,956,182 + +0.3 3,956,183 - -0.4 3,956,192 - -0.0 3,956,273 + +0.3 3,956,273 + -0.2 3,956,304 + +0.4 3,956,366 - IAI46_18785 0.11 +0.9 3,956,366 - IAI46_18785 0.11 +0.1 3,956,457 + IAI46_18785 0.26 -0.2 3,956,526 + IAI46_18785 0.37 +0.1 3,956,767 + IAI46_18785 0.76 -0.4 3,956,841 + IAI46_18785 0.88 -0.9 3,956,842 - IAI46_18785 0.88 +0.4 3,956,865 + -0.6 3,956,866 - -0.3 3,956,866 - -1.6 3,956,868 + -0.7 3,956,868 + +1.1 3,956,869 - +0.9 3,956,869 - +1.5 3,956,869 - +0.1 3,956,882 - -0.1 3,956,911 + +0.6 3,956,912 - +0.4 3,957,021 + IAI46_18790 0.23 -0.6 3,957,021 + IAI46_18790 0.23 -0.7 3,957,053 + IAI46_18790 0.29 -0.3 3,957,134 + IAI46_18790 0.47 -0.0
Or see this region's nucleotide sequence