Strain Fitness in Serratia liquefaciens MT49 around IAI46_18780

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18775 and IAI46_18780 are separated by 16 nucleotidesIAI46_18780 and IAI46_18785 are separated by 101 nucleotidesIAI46_18785 and IAI46_18790 are separated by 2 nucleotides IAI46_18775: IAI46_18775 - outer membrane protein assembly factor BamC, at 3,954,247 to 3,955,299 _18775 IAI46_18780: IAI46_18780 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,955,316 to 3,956,197 _18780 IAI46_18785: IAI46_18785 - glycine cleavage system transcriptional repressor, at 3,956,299 to 3,956,913 _18785 IAI46_18790: IAI46_18790 - thioredoxin-dependent thiol peroxidase, at 3,956,916 to 3,957,380 _18790 Position (kb) 3955 3956 3957Strain fitness (log2 ratio) -1 0 1at 3954.330 kb on + strandat 3954.330 kb on + strandat 3954.340 kb on - strandat 3954.386 kb on + strand, within IAI46_18775at 3954.387 kb on - strand, within IAI46_18775at 3954.387 kb on - strand, within IAI46_18775at 3954.455 kb on + strand, within IAI46_18775at 3954.551 kb on + strand, within IAI46_18775at 3954.552 kb on - strand, within IAI46_18775at 3954.565 kb on + strand, within IAI46_18775at 3954.701 kb on + strand, within IAI46_18775at 3954.701 kb on + strand, within IAI46_18775at 3954.828 kb on - strand, within IAI46_18775at 3954.913 kb on - strand, within IAI46_18775at 3955.004 kb on + strand, within IAI46_18775at 3955.004 kb on + strand, within IAI46_18775at 3955.005 kb on - strand, within IAI46_18775at 3955.106 kb on + strand, within IAI46_18775at 3955.107 kb on - strand, within IAI46_18775at 3955.134 kb on + strand, within IAI46_18775at 3955.135 kb on - strand, within IAI46_18775at 3955.242 kb on + strandat 3955.243 kb on - strandat 3955.311 kb on + strandat 3955.318 kb on - strandat 3955.385 kb on - strandat 3955.399 kb on + strandat 3955.426 kb on + strand, within IAI46_18780at 3955.698 kb on - strand, within IAI46_18780at 3955.698 kb on - strand, within IAI46_18780at 3955.718 kb on - strand, within IAI46_18780at 3955.729 kb on + strand, within IAI46_18780at 3955.730 kb on - strand, within IAI46_18780at 3955.730 kb on - strand, within IAI46_18780at 3955.799 kb on - strand, within IAI46_18780at 3955.799 kb on - strand, within IAI46_18780at 3955.801 kb on - strand, within IAI46_18780at 3955.852 kb on - strand, within IAI46_18780at 3955.878 kb on + strand, within IAI46_18780at 3955.882 kb on - strand, within IAI46_18780at 3955.882 kb on - strand, within IAI46_18780at 3955.882 kb on - strand, within IAI46_18780at 3955.908 kb on - strand, within IAI46_18780at 3956.019 kb on - strand, within IAI46_18780at 3956.102 kb on + strand, within IAI46_18780at 3956.103 kb on - strand, within IAI46_18780at 3956.103 kb on - strand, within IAI46_18780at 3956.109 kb on + strandat 3956.168 kb on - strandat 3956.182 kb on + strandat 3956.183 kb on - strandat 3956.192 kb on - strandat 3956.273 kb on + strandat 3956.273 kb on + strandat 3956.304 kb on + strandat 3956.366 kb on - strand, within IAI46_18785at 3956.366 kb on - strand, within IAI46_18785at 3956.457 kb on + strand, within IAI46_18785at 3956.526 kb on + strand, within IAI46_18785at 3956.767 kb on + strand, within IAI46_18785at 3956.841 kb on + strand, within IAI46_18785at 3956.842 kb on - strand, within IAI46_18785at 3956.865 kb on + strandat 3956.866 kb on - strandat 3956.866 kb on - strandat 3956.868 kb on + strandat 3956.868 kb on + strandat 3956.869 kb on - strandat 3956.869 kb on - strandat 3956.869 kb on - strandat 3956.882 kb on - strandat 3956.911 kb on + strandat 3956.912 kb on - strandat 3957.021 kb on + strand, within IAI46_18790at 3957.021 kb on + strand, within IAI46_18790at 3957.053 kb on + strand, within IAI46_18790at 3957.134 kb on + strand, within IAI46_18790

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,954,330 + -0.1
3,954,330 + +0.5
3,954,340 - -0.4
3,954,386 + IAI46_18775 0.13 +0.6
3,954,387 - IAI46_18775 0.13 +0.9
3,954,387 - IAI46_18775 0.13 -0.8
3,954,455 + IAI46_18775 0.20 -0.8
3,954,551 + IAI46_18775 0.29 +1.2
3,954,552 - IAI46_18775 0.29 -0.1
3,954,565 + IAI46_18775 0.30 -1.4
3,954,701 + IAI46_18775 0.43 +0.4
3,954,701 + IAI46_18775 0.43 +0.0
3,954,828 - IAI46_18775 0.55 +0.4
3,954,913 - IAI46_18775 0.63 +0.1
3,955,004 + IAI46_18775 0.72 +1.1
3,955,004 + IAI46_18775 0.72 -0.6
3,955,005 - IAI46_18775 0.72 +0.0
3,955,106 + IAI46_18775 0.82 -1.1
3,955,107 - IAI46_18775 0.82 -0.2
3,955,134 + IAI46_18775 0.84 +0.9
3,955,135 - IAI46_18775 0.84 -0.9
3,955,242 + +0.0
3,955,243 - -0.1
3,955,311 + -0.3
3,955,318 - +0.0
3,955,385 - -0.9
3,955,399 + -0.4
3,955,426 + IAI46_18780 0.12 -0.4
3,955,698 - IAI46_18780 0.43 +0.1
3,955,698 - IAI46_18780 0.43 +1.0
3,955,718 - IAI46_18780 0.46 -0.7
3,955,729 + IAI46_18780 0.47 +0.1
3,955,730 - IAI46_18780 0.47 +0.6
3,955,730 - IAI46_18780 0.47 +0.3
3,955,799 - IAI46_18780 0.55 +0.2
3,955,799 - IAI46_18780 0.55 -1.6
3,955,801 - IAI46_18780 0.55 -0.1
3,955,852 - IAI46_18780 0.61 +0.5
3,955,878 + IAI46_18780 0.64 -0.9
3,955,882 - IAI46_18780 0.64 +0.3
3,955,882 - IAI46_18780 0.64 +0.1
3,955,882 - IAI46_18780 0.64 +0.7
3,955,908 - IAI46_18780 0.67 -0.1
3,956,019 - IAI46_18780 0.80 -1.5
3,956,102 + IAI46_18780 0.89 +0.2
3,956,103 - IAI46_18780 0.89 -0.5
3,956,103 - IAI46_18780 0.89 +0.2
3,956,109 + -1.0
3,956,168 - +0.2
3,956,182 + +0.3
3,956,183 - -0.4
3,956,192 - -0.0
3,956,273 + +0.3
3,956,273 + -0.2
3,956,304 + +0.4
3,956,366 - IAI46_18785 0.11 +0.9
3,956,366 - IAI46_18785 0.11 +0.1
3,956,457 + IAI46_18785 0.26 -0.2
3,956,526 + IAI46_18785 0.37 +0.1
3,956,767 + IAI46_18785 0.76 -0.4
3,956,841 + IAI46_18785 0.88 -0.9
3,956,842 - IAI46_18785 0.88 +0.4
3,956,865 + -0.6
3,956,866 - -0.3
3,956,866 - -1.6
3,956,868 + -0.7
3,956,868 + +1.1
3,956,869 - +0.9
3,956,869 - +1.5
3,956,869 - +0.1
3,956,882 - -0.1
3,956,911 + +0.6
3,956,912 - +0.4
3,957,021 + IAI46_18790 0.23 -0.6
3,957,021 + IAI46_18790 0.23 -0.7
3,957,053 + IAI46_18790 0.29 -0.3
3,957,134 + IAI46_18790 0.47 -0.0

Or see this region's nucleotide sequence