Strain Fitness in Serratia liquefaciens MT49 around IAI46_18625

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18620 and IAI46_18625 are separated by 295 nucleotidesIAI46_18625 and IAI46_18630 are separated by 17 nucleotides IAI46_18620: IAI46_18620 - lytic polysaccharide monooxygenase, at 3,920,918 to 3,921,511 _18620 IAI46_18625: IAI46_18625 - transaldolase, at 3,921,807 to 3,922,757 _18625 IAI46_18630: IAI46_18630 - transketolase, at 3,922,775 to 3,924,769 _18630 Position (kb) 3921 3922 3923Strain fitness (log2 ratio) -1 0 1 2at 3920.890 kb on - strandat 3920.918 kb on - strandat 3920.926 kb on + strandat 3920.927 kb on - strandat 3920.941 kb on + strandat 3920.941 kb on + strandat 3921.005 kb on + strand, within IAI46_18620at 3921.032 kb on + strand, within IAI46_18620at 3921.032 kb on + strand, within IAI46_18620at 3921.032 kb on + strand, within IAI46_18620at 3921.032 kb on + strand, within IAI46_18620at 3921.033 kb on - strand, within IAI46_18620at 3921.033 kb on - strand, within IAI46_18620at 3921.078 kb on - strand, within IAI46_18620at 3921.408 kb on + strand, within IAI46_18620at 3921.408 kb on + strand, within IAI46_18620at 3921.409 kb on - strand, within IAI46_18620at 3921.456 kb on + strandat 3921.456 kb on + strandat 3921.463 kb on + strandat 3921.463 kb on + strandat 3921.479 kb on + strandat 3921.480 kb on - strandat 3921.480 kb on - strandat 3921.525 kb on + strandat 3921.686 kb on - strandat 3921.802 kb on + strandat 3921.806 kb on - strandat 3921.817 kb on + strandat 3921.905 kb on + strand, within IAI46_18625at 3921.905 kb on + strand, within IAI46_18625at 3921.945 kb on + strand, within IAI46_18625at 3921.945 kb on + strand, within IAI46_18625at 3921.946 kb on - strand, within IAI46_18625at 3921.947 kb on + strand, within IAI46_18625at 3921.947 kb on + strand, within IAI46_18625at 3921.947 kb on + strand, within IAI46_18625at 3921.947 kb on + strand, within IAI46_18625at 3921.976 kb on - strand, within IAI46_18625at 3922.143 kb on - strand, within IAI46_18625at 3922.159 kb on - strand, within IAI46_18625at 3922.172 kb on + strand, within IAI46_18625at 3922.173 kb on - strand, within IAI46_18625at 3922.178 kb on + strand, within IAI46_18625at 3922.178 kb on + strand, within IAI46_18625at 3922.179 kb on - strand, within IAI46_18625at 3922.346 kb on + strand, within IAI46_18625at 3922.347 kb on - strand, within IAI46_18625at 3922.347 kb on - strand, within IAI46_18625at 3922.347 kb on - strand, within IAI46_18625at 3922.347 kb on - strand, within IAI46_18625at 3922.347 kb on - strand, within IAI46_18625at 3922.350 kb on + strand, within IAI46_18625at 3922.350 kb on + strand, within IAI46_18625at 3922.350 kb on + strand, within IAI46_18625at 3922.350 kb on + strand, within IAI46_18625at 3922.351 kb on - strand, within IAI46_18625at 3922.351 kb on - strand, within IAI46_18625at 3922.351 kb on - strand, within IAI46_18625at 3922.351 kb on - strand, within IAI46_18625at 3922.351 kb on - strand, within IAI46_18625at 3922.359 kb on + strand, within IAI46_18625at 3922.360 kb on - strand, within IAI46_18625at 3922.432 kb on - strand, within IAI46_18625at 3922.432 kb on - strand, within IAI46_18625at 3922.432 kb on - strand, within IAI46_18625at 3922.437 kb on + strand, within IAI46_18625at 3922.440 kb on + strand, within IAI46_18625at 3922.440 kb on + strand, within IAI46_18625at 3922.469 kb on + strand, within IAI46_18625at 3922.470 kb on - strand, within IAI46_18625at 3922.470 kb on - strand, within IAI46_18625at 3922.492 kb on + strand, within IAI46_18625at 3922.493 kb on - strand, within IAI46_18625at 3922.659 kb on - strand, within IAI46_18625at 3922.659 kb on - strand, within IAI46_18625at 3922.659 kb on - strand, within IAI46_18625at 3922.755 kb on + strandat 3923.230 kb on + strand, within IAI46_18630at 3923.230 kb on + strand, within IAI46_18630

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,920,890 - +0.4
3,920,918 - +0.1
3,920,926 + -0.8
3,920,927 - -0.1
3,920,941 + +1.1
3,920,941 + +0.0
3,921,005 + IAI46_18620 0.15 +0.2
3,921,032 + IAI46_18620 0.19 +0.1
3,921,032 + IAI46_18620 0.19 -0.0
3,921,032 + IAI46_18620 0.19 +0.2
3,921,032 + IAI46_18620 0.19 +0.1
3,921,033 - IAI46_18620 0.19 +2.4
3,921,033 - IAI46_18620 0.19 -0.3
3,921,078 - IAI46_18620 0.27 +2.2
3,921,408 + IAI46_18620 0.82 -0.8
3,921,408 + IAI46_18620 0.82 -0.4
3,921,409 - IAI46_18620 0.83 -0.8
3,921,456 + +0.9
3,921,456 + +0.4
3,921,463 + -1.0
3,921,463 + +0.5
3,921,479 + -0.4
3,921,480 - +1.6
3,921,480 - +0.3
3,921,525 + +0.8
3,921,686 - -0.7
3,921,802 + +1.2
3,921,806 - +0.5
3,921,817 + -0.7
3,921,905 + IAI46_18625 0.10 +0.3
3,921,905 + IAI46_18625 0.10 +1.5
3,921,945 + IAI46_18625 0.15 +0.4
3,921,945 + IAI46_18625 0.15 +1.2
3,921,946 - IAI46_18625 0.15 +0.1
3,921,947 + IAI46_18625 0.15 +0.4
3,921,947 + IAI46_18625 0.15 -0.3
3,921,947 + IAI46_18625 0.15 -0.2
3,921,947 + IAI46_18625 0.15 +0.6
3,921,976 - IAI46_18625 0.18 +0.2
3,922,143 - IAI46_18625 0.35 +0.2
3,922,159 - IAI46_18625 0.37 -0.0
3,922,172 + IAI46_18625 0.38 -0.4
3,922,173 - IAI46_18625 0.38 +0.1
3,922,178 + IAI46_18625 0.39 +0.6
3,922,178 + IAI46_18625 0.39 +0.9
3,922,179 - IAI46_18625 0.39 +1.0
3,922,346 + IAI46_18625 0.57 +0.8
3,922,347 - IAI46_18625 0.57 -0.7
3,922,347 - IAI46_18625 0.57 +0.3
3,922,347 - IAI46_18625 0.57 -0.2
3,922,347 - IAI46_18625 0.57 -0.1
3,922,347 - IAI46_18625 0.57 -0.2
3,922,350 + IAI46_18625 0.57 -0.9
3,922,350 + IAI46_18625 0.57 -0.3
3,922,350 + IAI46_18625 0.57 -0.4
3,922,350 + IAI46_18625 0.57 -0.1
3,922,351 - IAI46_18625 0.57 +0.6
3,922,351 - IAI46_18625 0.57 +0.3
3,922,351 - IAI46_18625 0.57 -0.1
3,922,351 - IAI46_18625 0.57 +0.5
3,922,351 - IAI46_18625 0.57 +0.5
3,922,359 + IAI46_18625 0.58 -0.2
3,922,360 - IAI46_18625 0.58 +0.2
3,922,432 - IAI46_18625 0.66 -0.8
3,922,432 - IAI46_18625 0.66 -1.6
3,922,432 - IAI46_18625 0.66 -0.0
3,922,437 + IAI46_18625 0.66 +0.4
3,922,440 + IAI46_18625 0.67 -0.2
3,922,440 + IAI46_18625 0.67 +0.5
3,922,469 + IAI46_18625 0.70 +0.4
3,922,470 - IAI46_18625 0.70 +0.6
3,922,470 - IAI46_18625 0.70 +0.4
3,922,492 + IAI46_18625 0.72 -0.7
3,922,493 - IAI46_18625 0.72 -0.3
3,922,659 - IAI46_18625 0.90 -0.4
3,922,659 - IAI46_18625 0.90 +0.8
3,922,659 - IAI46_18625 0.90 +1.3
3,922,755 + +0.9
3,923,230 + IAI46_18630 0.23 -0.2
3,923,230 + IAI46_18630 0.23 -0.0

Or see this region's nucleotide sequence