Strain Fitness in Serratia liquefaciens MT49 around IAI46_17555

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17545 and IAI46_17550 are separated by 11 nucleotidesIAI46_17550 and IAI46_17555 are separated by 11 nucleotidesIAI46_17555 and IAI46_17560 overlap by 1 nucleotides IAI46_17545: IAI46_17545 - o-succinylbenzoate synthase, at 3,689,746 to 3,690,717 _17545 IAI46_17550: IAI46_17550 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,690,729 to 3,691,586 _17550 IAI46_17555: IAI46_17555 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,691,598 to 3,692,365 _17555 IAI46_17560: IAI46_17560 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 3,692,365 to 3,694,038 _17560 Position (kb) 3691 3692 3693Strain fitness (log2 ratio) -2 -1 0 1 2at 3690.730 kb on + strandat 3690.730 kb on + strandat 3690.814 kb on + strandat 3690.815 kb on - strand, within IAI46_17550at 3690.815 kb on - strand, within IAI46_17550at 3690.815 kb on - strand, within IAI46_17550at 3690.943 kb on - strand, within IAI46_17550at 3691.078 kb on + strand, within IAI46_17550at 3691.078 kb on + strand, within IAI46_17550at 3691.079 kb on - strand, within IAI46_17550at 3691.172 kb on + strand, within IAI46_17550at 3691.179 kb on + strand, within IAI46_17550at 3691.180 kb on - strand, within IAI46_17550at 3691.180 kb on - strand, within IAI46_17550at 3691.180 kb on - strand, within IAI46_17550at 3691.370 kb on + strand, within IAI46_17550at 3691.371 kb on - strand, within IAI46_17550at 3691.469 kb on + strand, within IAI46_17550at 3691.507 kb on + strandat 3691.515 kb on - strandat 3691.559 kb on - strandat 3691.579 kb on + strandat 3691.666 kb on + strandat 3692.041 kb on + strand, within IAI46_17555at 3692.042 kb on - strand, within IAI46_17555at 3692.042 kb on - strand, within IAI46_17555at 3692.093 kb on + strand, within IAI46_17555at 3692.094 kb on - strand, within IAI46_17555at 3692.094 kb on - strand, within IAI46_17555at 3692.094 kb on - strand, within IAI46_17555at 3692.127 kb on + strand, within IAI46_17555at 3692.367 kb on - strandat 3692.367 kb on - strandat 3692.571 kb on - strand, within IAI46_17560at 3692.631 kb on + strand, within IAI46_17560at 3692.632 kb on - strand, within IAI46_17560at 3692.697 kb on - strand, within IAI46_17560at 3693.122 kb on + strand, within IAI46_17560at 3693.122 kb on + strand, within IAI46_17560at 3693.244 kb on + strand, within IAI46_17560

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,690,730 + +0.5
3,690,730 + -0.8
3,690,814 + +0.6
3,690,815 - IAI46_17550 0.10 -2.3
3,690,815 - IAI46_17550 0.10 -0.4
3,690,815 - IAI46_17550 0.10 +0.1
3,690,943 - IAI46_17550 0.25 +0.1
3,691,078 + IAI46_17550 0.41 +0.9
3,691,078 + IAI46_17550 0.41 +0.4
3,691,079 - IAI46_17550 0.41 +0.8
3,691,172 + IAI46_17550 0.52 +1.3
3,691,179 + IAI46_17550 0.52 -1.1
3,691,180 - IAI46_17550 0.53 +1.4
3,691,180 - IAI46_17550 0.53 +0.7
3,691,180 - IAI46_17550 0.53 -0.2
3,691,370 + IAI46_17550 0.75 -0.2
3,691,371 - IAI46_17550 0.75 +0.6
3,691,469 + IAI46_17550 0.86 +1.2
3,691,507 + -0.9
3,691,515 - +0.2
3,691,559 - -0.7
3,691,579 + -0.4
3,691,666 + -0.7
3,692,041 + IAI46_17555 0.58 -0.5
3,692,042 - IAI46_17555 0.58 +0.8
3,692,042 - IAI46_17555 0.58 +0.2
3,692,093 + IAI46_17555 0.64 +0.3
3,692,094 - IAI46_17555 0.65 -0.2
3,692,094 - IAI46_17555 0.65 -0.8
3,692,094 - IAI46_17555 0.65 -0.4
3,692,127 + IAI46_17555 0.69 +0.4
3,692,367 - +0.0
3,692,367 - +0.4
3,692,571 - IAI46_17560 0.12 +2.4
3,692,631 + IAI46_17560 0.16 +0.8
3,692,632 - IAI46_17560 0.16 +0.0
3,692,697 - IAI46_17560 0.20 -0.7
3,693,122 + IAI46_17560 0.45 -0.2
3,693,122 + IAI46_17560 0.45 +0.0
3,693,244 + IAI46_17560 0.53 -0.5

Or see this region's nucleotide sequence