Strain Fitness in Serratia liquefaciens MT49 around IAI46_16240

Experiment: dichromate 20 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_16235 and IAI46_16240 are separated by 2 nucleotidesIAI46_16240 and IAI46_16245 are separated by 100 nucleotides IAI46_16235: IAI46_16235 - CoA transferase, at 3,403,898 to 3,405,283 _16235 IAI46_16240: IAI46_16240 - LysR family transcriptional regulator, at 3,405,286 to 3,406,158 _16240 IAI46_16245: IAI46_16245 - aspartate aminotransferase family protein, at 3,406,259 to 3,407,674 _16245 Position (kb) 3405 3406 3407Strain fitness (log2 ratio) -1 0 1 2at 3404.589 kb on + strand, within IAI46_16235at 3404.728 kb on + strand, within IAI46_16235at 3405.038 kb on + strand, within IAI46_16235at 3405.223 kb on - strandat 3405.313 kb on + strandat 3405.314 kb on - strandat 3405.314 kb on - strandat 3405.314 kb on - strandat 3405.531 kb on - strand, within IAI46_16240at 3405.574 kb on - strand, within IAI46_16240at 3405.574 kb on - strand, within IAI46_16240at 3405.606 kb on + strand, within IAI46_16240at 3405.789 kb on + strand, within IAI46_16240at 3405.789 kb on + strand, within IAI46_16240at 3405.790 kb on - strand, within IAI46_16240at 3405.790 kb on - strand, within IAI46_16240at 3405.790 kb on - strand, within IAI46_16240at 3405.833 kb on - strand, within IAI46_16240at 3406.115 kb on - strandat 3406.232 kb on + strandat 3406.232 kb on + strandat 3406.242 kb on + strandat 3406.255 kb on - strandat 3406.463 kb on + strand, within IAI46_16245at 3406.499 kb on + strand, within IAI46_16245at 3406.596 kb on - strand, within IAI46_16245at 3406.750 kb on + strand, within IAI46_16245at 3406.900 kb on + strand, within IAI46_16245at 3406.933 kb on + strand, within IAI46_16245at 3406.947 kb on + strand, within IAI46_16245at 3406.951 kb on + strand, within IAI46_16245at 3406.952 kb on - strand, within IAI46_16245at 3406.985 kb on - strand, within IAI46_16245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
remove
3,404,589 + IAI46_16235 0.50 -0.4
3,404,728 + IAI46_16235 0.60 +0.9
3,405,038 + IAI46_16235 0.82 -0.4
3,405,223 - +0.6
3,405,313 + +2.0
3,405,314 - +0.3
3,405,314 - -0.6
3,405,314 - +0.5
3,405,531 - IAI46_16240 0.28 +0.3
3,405,574 - IAI46_16240 0.33 +0.1
3,405,574 - IAI46_16240 0.33 -0.4
3,405,606 + IAI46_16240 0.37 +0.6
3,405,789 + IAI46_16240 0.58 +0.3
3,405,789 + IAI46_16240 0.58 +0.4
3,405,790 - IAI46_16240 0.58 +0.1
3,405,790 - IAI46_16240 0.58 +0.1
3,405,790 - IAI46_16240 0.58 -0.1
3,405,833 - IAI46_16240 0.63 -0.0
3,406,115 - +0.3
3,406,232 + +0.1
3,406,232 + +1.2
3,406,242 + +0.8
3,406,255 - +0.5
3,406,463 + IAI46_16245 0.14 +0.7
3,406,499 + IAI46_16245 0.17 -0.5
3,406,596 - IAI46_16245 0.24 +1.3
3,406,750 + IAI46_16245 0.35 +0.5
3,406,900 + IAI46_16245 0.45 -0.7
3,406,933 + IAI46_16245 0.48 +1.0
3,406,947 + IAI46_16245 0.49 +0.6
3,406,951 + IAI46_16245 0.49 +0.3
3,406,952 - IAI46_16245 0.49 -0.5
3,406,985 - IAI46_16245 0.51 +1.7

Or see this region's nucleotide sequence