Strain Fitness in Serratia liquefaciens MT49 around IAI46_15740

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15735 and IAI46_15740 are separated by 248 nucleotidesIAI46_15740 and IAI46_15745 are separated by 556 nucleotides IAI46_15735: IAI46_15735 - FTR1 family protein, at 3,303,524 to 3,304,369 _15735 IAI46_15740: IAI46_15740 - sodium/proline symporter PutP, at 3,304,618 to 3,306,102 _15740 IAI46_15745: IAI46_15745 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 3,306,659 to 3,310,630 _15745 Position (kb) 3304 3305 3306 3307Strain fitness (log2 ratio) -2 -1 0 1 2at 3303.619 kb on - strand, within IAI46_15735at 3303.635 kb on + strand, within IAI46_15735at 3303.654 kb on + strand, within IAI46_15735at 3303.709 kb on + strand, within IAI46_15735at 3303.808 kb on + strand, within IAI46_15735at 3304.097 kb on - strand, within IAI46_15735at 3304.097 kb on - strand, within IAI46_15735at 3304.097 kb on - strand, within IAI46_15735at 3304.114 kb on + strand, within IAI46_15735at 3304.114 kb on + strand, within IAI46_15735at 3304.116 kb on + strand, within IAI46_15735at 3304.116 kb on + strand, within IAI46_15735at 3304.116 kb on + strand, within IAI46_15735at 3304.116 kb on + strand, within IAI46_15735at 3304.116 kb on + strand, within IAI46_15735at 3304.116 kb on + strand, within IAI46_15735at 3304.116 kb on + strand, within IAI46_15735at 3304.117 kb on - strand, within IAI46_15735at 3304.117 kb on - strand, within IAI46_15735at 3304.117 kb on - strand, within IAI46_15735at 3304.117 kb on - strand, within IAI46_15735at 3304.117 kb on - strand, within IAI46_15735at 3304.136 kb on + strand, within IAI46_15735at 3304.136 kb on + strand, within IAI46_15735at 3304.265 kb on + strand, within IAI46_15735at 3304.296 kb on + strandat 3304.296 kb on + strandat 3304.297 kb on - strandat 3304.352 kb on - strandat 3304.369 kb on + strandat 3304.370 kb on - strandat 3304.370 kb on - strandat 3304.373 kb on + strandat 3304.373 kb on + strandat 3304.374 kb on - strandat 3304.374 kb on - strandat 3304.374 kb on - strandat 3304.374 kb on - strandat 3304.374 kb on - strandat 3304.374 kb on - strandat 3304.376 kb on + strandat 3304.588 kb on - strandat 3304.821 kb on + strand, within IAI46_15740at 3304.822 kb on - strand, within IAI46_15740at 3304.895 kb on + strand, within IAI46_15740at 3305.082 kb on + strand, within IAI46_15740at 3305.082 kb on + strand, within IAI46_15740at 3305.220 kb on - strand, within IAI46_15740at 3305.360 kb on + strand, within IAI46_15740at 3305.360 kb on + strand, within IAI46_15740at 3305.463 kb on + strand, within IAI46_15740at 3305.463 kb on + strand, within IAI46_15740at 3305.487 kb on + strand, within IAI46_15740at 3305.580 kb on + strand, within IAI46_15740at 3305.581 kb on - strand, within IAI46_15740at 3305.581 kb on - strand, within IAI46_15740at 3305.583 kb on - strand, within IAI46_15740at 3305.589 kb on + strand, within IAI46_15740at 3305.684 kb on + strand, within IAI46_15740at 3305.684 kb on + strand, within IAI46_15740at 3305.684 kb on + strand, within IAI46_15740at 3305.685 kb on - strand, within IAI46_15740at 3305.685 kb on - strand, within IAI46_15740at 3305.685 kb on - strand, within IAI46_15740at 3305.688 kb on + strand, within IAI46_15740at 3305.688 kb on + strand, within IAI46_15740at 3305.863 kb on + strand, within IAI46_15740at 3306.000 kb on - strandat 3306.000 kb on - strandat 3306.027 kb on - strandat 3306.035 kb on - strandat 3306.060 kb on + strandat 3306.063 kb on - strandat 3306.124 kb on + strandat 3306.125 kb on - strandat 3306.136 kb on + strandat 3306.137 kb on - strandat 3306.148 kb on + strandat 3306.149 kb on - strandat 3306.149 kb on - strandat 3306.206 kb on - strandat 3306.243 kb on - strandat 3306.584 kb on + strandat 3306.615 kb on + strandat 3306.638 kb on + strandat 3306.639 kb on - strandat 3306.776 kb on + strandat 3306.860 kb on - strandat 3306.860 kb on - strandat 3307.008 kb on + strandat 3307.046 kb on + strandat 3307.100 kb on - strand, within IAI46_15745

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,303,619 - IAI46_15735 0.11 +0.6
3,303,635 + IAI46_15735 0.13 +0.5
3,303,654 + IAI46_15735 0.15 -0.8
3,303,709 + IAI46_15735 0.22 -1.0
3,303,808 + IAI46_15735 0.34 +0.1
3,304,097 - IAI46_15735 0.68 +0.1
3,304,097 - IAI46_15735 0.68 +0.5
3,304,097 - IAI46_15735 0.68 -0.5
3,304,114 + IAI46_15735 0.70 -0.3
3,304,114 + IAI46_15735 0.70 -0.5
3,304,116 + IAI46_15735 0.70 -0.3
3,304,116 + IAI46_15735 0.70 -0.3
3,304,116 + IAI46_15735 0.70 -1.5
3,304,116 + IAI46_15735 0.70 -1.0
3,304,116 + IAI46_15735 0.70 -0.4
3,304,116 + IAI46_15735 0.70 +2.5
3,304,116 + IAI46_15735 0.70 +0.4
3,304,117 - IAI46_15735 0.70 +0.0
3,304,117 - IAI46_15735 0.70 -1.0
3,304,117 - IAI46_15735 0.70 +0.3
3,304,117 - IAI46_15735 0.70 -0.3
3,304,117 - IAI46_15735 0.70 -0.5
3,304,136 + IAI46_15735 0.72 +1.2
3,304,136 + IAI46_15735 0.72 +0.1
3,304,265 + IAI46_15735 0.88 -0.1
3,304,296 + -0.5
3,304,296 + +0.4
3,304,297 - -0.4
3,304,352 - +0.3
3,304,369 + +0.8
3,304,370 - +0.6
3,304,370 - -0.2
3,304,373 + +0.6
3,304,373 + -0.2
3,304,374 - -0.3
3,304,374 - -0.6
3,304,374 - +0.0
3,304,374 - +0.5
3,304,374 - -1.1
3,304,374 - -0.8
3,304,376 + +0.7
3,304,588 - +0.3
3,304,821 + IAI46_15740 0.14 +0.3
3,304,822 - IAI46_15740 0.14 -0.0
3,304,895 + IAI46_15740 0.19 +0.5
3,305,082 + IAI46_15740 0.31 +0.7
3,305,082 + IAI46_15740 0.31 -0.0
3,305,220 - IAI46_15740 0.41 +0.0
3,305,360 + IAI46_15740 0.50 -0.1
3,305,360 + IAI46_15740 0.50 +0.6
3,305,463 + IAI46_15740 0.57 +0.1
3,305,463 + IAI46_15740 0.57 +0.4
3,305,487 + IAI46_15740 0.59 +0.4
3,305,580 + IAI46_15740 0.65 -1.0
3,305,581 - IAI46_15740 0.65 -0.3
3,305,581 - IAI46_15740 0.65 +0.4
3,305,583 - IAI46_15740 0.65 +0.4
3,305,589 + IAI46_15740 0.65 +0.9
3,305,684 + IAI46_15740 0.72 -1.0
3,305,684 + IAI46_15740 0.72 -0.5
3,305,684 + IAI46_15740 0.72 +1.0
3,305,685 - IAI46_15740 0.72 -0.1
3,305,685 - IAI46_15740 0.72 -0.8
3,305,685 - IAI46_15740 0.72 +0.4
3,305,688 + IAI46_15740 0.72 +0.4
3,305,688 + IAI46_15740 0.72 +0.7
3,305,863 + IAI46_15740 0.84 +1.1
3,306,000 - -2.0
3,306,000 - -1.0
3,306,027 - -0.1
3,306,035 - -0.5
3,306,060 + +0.0
3,306,063 - -1.3
3,306,124 + +0.7
3,306,125 - +0.4
3,306,136 + +1.4
3,306,137 - -0.5
3,306,148 + +1.7
3,306,149 - +0.3
3,306,149 - -1.2
3,306,206 - +0.6
3,306,243 - -0.1
3,306,584 + -0.3
3,306,615 + +0.8
3,306,638 + -0.1
3,306,639 - +0.3
3,306,776 + -0.3
3,306,860 - -0.6
3,306,860 - +0.4
3,307,008 + +0.0
3,307,046 + -0.7
3,307,100 - IAI46_15745 0.11 -1.2

Or see this region's nucleotide sequence