Strain Fitness in Serratia liquefaciens MT49 around IAI46_14635

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14625 and IAI46_14630 are separated by 259 nucleotidesIAI46_14630 and IAI46_14635 are separated by 73 nucleotidesIAI46_14635 and IAI46_14640 are separated by 19 nucleotidesIAI46_14640 and IAI46_14645 overlap by 1 nucleotides IAI46_14625: IAI46_14625 - Holliday junction branch migration protein RuvA, at 3,100,483 to 3,101,097 _14625 IAI46_14630: IAI46_14630 - crossover junction endodeoxyribonuclease RuvC, at 3,101,357 to 3,101,878 _14630 IAI46_14635: IAI46_14635 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,101,952 to 3,102,695 _14635 IAI46_14640: IAI46_14640 - dihydroneopterin triphosphate diphosphatase, at 3,102,715 to 3,103,161 _14640 IAI46_14645: IAI46_14645 - aspartate--tRNA ligase, at 3,103,161 to 3,104,951 _14645 Position (kb) 3101 3102 3103Strain fitness (log2 ratio) -1 0 1at 3101.158 kb on - strandat 3101.212 kb on - strandat 3101.214 kb on - strandat 3101.214 kb on - strandat 3101.261 kb on + strandat 3101.351 kb on + strandat 3101.352 kb on - strandat 3101.359 kb on - strandat 3101.996 kb on - strandat 3102.051 kb on - strand, within IAI46_14635at 3102.051 kb on - strand, within IAI46_14635at 3102.200 kb on - strand, within IAI46_14635at 3102.681 kb on - strandat 3102.684 kb on - strandat 3103.091 kb on - strand, within IAI46_14640at 3103.155 kb on - strandat 3103.155 kb on - strandat 3103.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,101,158 - +0.8
3,101,212 - +1.4
3,101,214 - -0.2
3,101,214 - -0.3
3,101,261 + +0.8
3,101,351 + -0.1
3,101,352 - +0.1
3,101,359 - -0.0
3,101,996 - +0.9
3,102,051 - IAI46_14635 0.13 -0.9
3,102,051 - IAI46_14635 0.13 +1.0
3,102,200 - IAI46_14635 0.33 -0.0
3,102,681 - +0.3
3,102,684 - +0.5
3,103,091 - IAI46_14640 0.84 -0.3
3,103,155 - +0.1
3,103,155 - -1.5
3,103,155 - -0.1

Or see this region's nucleotide sequence