Strain Fitness in Serratia liquefaciens MT49 around IAI46_14595

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14590 and IAI46_14595 are separated by 67 nucleotidesIAI46_14595 and IAI46_14600 are separated by 149 nucleotides IAI46_14590: IAI46_14590 - leucine-rich repeat domain-containing protein, at 3,093,390 to 3,094,274 _14590 IAI46_14595: IAI46_14595 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 3,094,342 to 3,095,310 _14595 IAI46_14600: IAI46_14600 - murein DD-endopeptidase MepM, at 3,095,460 to 3,096,782 _14600 Position (kb) 3094 3095 3096Strain fitness (log2 ratio) -1 0 1 2at 3093.471 kb on - strandat 3093.471 kb on - strandat 3093.478 kb on + strandat 3093.510 kb on + strand, within IAI46_14590at 3093.614 kb on - strand, within IAI46_14590at 3093.705 kb on + strand, within IAI46_14590at 3093.709 kb on + strand, within IAI46_14590at 3093.710 kb on - strand, within IAI46_14590at 3093.712 kb on - strand, within IAI46_14590at 3093.791 kb on + strand, within IAI46_14590at 3093.792 kb on - strand, within IAI46_14590at 3093.930 kb on - strand, within IAI46_14590at 3094.085 kb on - strand, within IAI46_14590at 3094.268 kb on + strandat 3094.343 kb on + strandat 3094.352 kb on - strandat 3095.506 kb on + strandat 3095.530 kb on - strandat 3095.702 kb on + strand, within IAI46_14600at 3095.702 kb on + strand, within IAI46_14600at 3095.702 kb on + strand, within IAI46_14600at 3095.703 kb on - strand, within IAI46_14600at 3095.703 kb on - strand, within IAI46_14600at 3095.703 kb on - strand, within IAI46_14600at 3095.703 kb on - strand, within IAI46_14600at 3095.705 kb on - strand, within IAI46_14600at 3095.744 kb on - strand, within IAI46_14600at 3095.966 kb on - strand, within IAI46_14600at 3095.996 kb on - strand, within IAI46_14600at 3095.999 kb on - strand, within IAI46_14600at 3096.289 kb on + strand, within IAI46_14600at 3096.290 kb on - strand, within IAI46_14600

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,093,471 - -0.0
3,093,471 - -0.3
3,093,478 + -1.2
3,093,510 + IAI46_14590 0.14 +0.1
3,093,614 - IAI46_14590 0.25 +0.4
3,093,705 + IAI46_14590 0.36 -0.2
3,093,709 + IAI46_14590 0.36 +0.2
3,093,710 - IAI46_14590 0.36 +0.2
3,093,712 - IAI46_14590 0.36 -0.4
3,093,791 + IAI46_14590 0.45 +0.1
3,093,792 - IAI46_14590 0.45 -1.7
3,093,930 - IAI46_14590 0.61 -0.2
3,094,085 - IAI46_14590 0.79 +1.4
3,094,268 + -0.3
3,094,343 + +0.1
3,094,352 - +0.2
3,095,506 + -1.1
3,095,530 - +0.4
3,095,702 + IAI46_14600 0.18 +2.4
3,095,702 + IAI46_14600 0.18 +2.0
3,095,702 + IAI46_14600 0.18 +1.8
3,095,703 - IAI46_14600 0.18 +0.9
3,095,703 - IAI46_14600 0.18 +0.6
3,095,703 - IAI46_14600 0.18 +0.1
3,095,703 - IAI46_14600 0.18 +1.2
3,095,705 - IAI46_14600 0.19 +1.2
3,095,744 - IAI46_14600 0.21 +0.7
3,095,966 - IAI46_14600 0.38 +1.2
3,095,996 - IAI46_14600 0.41 +0.9
3,095,999 - IAI46_14600 0.41 -0.0
3,096,289 + IAI46_14600 0.63 +2.0
3,096,290 - IAI46_14600 0.63 +0.9

Or see this region's nucleotide sequence