Strain Fitness in Serratia liquefaciens MT49 around IAI46_13590

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13580 and IAI46_13585 are separated by 0 nucleotidesIAI46_13585 and IAI46_13590 are separated by 48 nucleotidesIAI46_13590 and IAI46_13595 are separated by 75 nucleotides IAI46_13580: IAI46_13580 - DUF1833 family protein, at 2,901,904 to 2,902,374 _13580 IAI46_13585: IAI46_13585 - hypothetical protein, at 2,902,375 to 2,902,842 _13585 IAI46_13590: IAI46_13590 - hypothetical protein, at 2,902,891 to 2,903,319 _13590 IAI46_13595: IAI46_13595 - tape measure protein, at 2,903,395 to 2,906,580 _13595 Position (kb) 2902 2903 2904Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2901.942 kb on - strandat 2902.054 kb on - strand, within IAI46_13580at 2902.082 kb on + strand, within IAI46_13580at 2902.082 kb on + strand, within IAI46_13580at 2902.233 kb on + strand, within IAI46_13580at 2902.235 kb on + strand, within IAI46_13580at 2902.236 kb on - strand, within IAI46_13580at 2902.236 kb on - strand, within IAI46_13580at 2902.289 kb on + strand, within IAI46_13580at 2902.289 kb on + strand, within IAI46_13580at 2902.307 kb on + strand, within IAI46_13580at 2902.435 kb on + strand, within IAI46_13585at 2902.475 kb on + strand, within IAI46_13585at 2902.537 kb on + strand, within IAI46_13585at 2902.665 kb on + strand, within IAI46_13585at 2902.834 kb on + strandat 2902.962 kb on - strand, within IAI46_13590at 2902.962 kb on - strand, within IAI46_13590at 2903.013 kb on - strand, within IAI46_13590at 2903.019 kb on + strand, within IAI46_13590at 2903.019 kb on + strand, within IAI46_13590at 2903.072 kb on + strand, within IAI46_13590at 2903.072 kb on + strand, within IAI46_13590at 2903.073 kb on - strand, within IAI46_13590at 2903.076 kb on - strand, within IAI46_13590at 2903.076 kb on - strand, within IAI46_13590at 2903.095 kb on - strand, within IAI46_13590at 2903.116 kb on - strand, within IAI46_13590at 2903.192 kb on - strand, within IAI46_13590at 2903.197 kb on + strand, within IAI46_13590at 2903.197 kb on + strand, within IAI46_13590at 2903.198 kb on - strand, within IAI46_13590at 2903.198 kb on - strand, within IAI46_13590at 2903.203 kb on - strand, within IAI46_13590at 2903.214 kb on + strand, within IAI46_13590at 2903.214 kb on + strand, within IAI46_13590at 2903.240 kb on + strand, within IAI46_13590at 2903.241 kb on - strand, within IAI46_13590at 2903.255 kb on + strand, within IAI46_13590at 2903.302 kb on - strandat 2903.302 kb on - strandat 2903.324 kb on - strandat 2903.354 kb on - strandat 2903.360 kb on + strandat 2903.383 kb on - strandat 2903.384 kb on + strandat 2903.385 kb on - strandat 2903.385 kb on - strandat 2903.392 kb on + strandat 2903.427 kb on - strandat 2903.427 kb on - strandat 2903.427 kb on - strandat 2903.427 kb on - strandat 2903.446 kb on + strandat 2903.446 kb on + strandat 2903.446 kb on + strandat 2903.446 kb on + strandat 2903.446 kb on + strandat 2903.465 kb on - strandat 2903.480 kb on - strandat 2903.485 kb on + strandat 2903.486 kb on - strandat 2903.516 kb on - strandat 2903.522 kb on + strandat 2903.569 kb on + strandat 2903.636 kb on + strandat 2903.636 kb on + strandat 2903.693 kb on + strandat 2903.694 kb on - strandat 2903.694 kb on - strandat 2903.768 kb on - strand, within IAI46_13595at 2903.768 kb on - strand, within IAI46_13595at 2903.768 kb on - strand, within IAI46_13595at 2903.768 kb on - strand, within IAI46_13595at 2903.854 kb on - strand, within IAI46_13595at 2903.854 kb on - strand, within IAI46_13595at 2904.009 kb on + strand, within IAI46_13595at 2904.079 kb on + strand, within IAI46_13595at 2904.142 kb on - strand, within IAI46_13595at 2904.221 kb on - strand, within IAI46_13595at 2904.221 kb on - strand, within IAI46_13595at 2904.221 kb on - strand, within IAI46_13595at 2904.307 kb on + strand, within IAI46_13595

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,901,942 - +0.0
2,902,054 - IAI46_13580 0.32 +1.0
2,902,082 + IAI46_13580 0.38 -0.7
2,902,082 + IAI46_13580 0.38 +0.6
2,902,233 + IAI46_13580 0.70 +0.3
2,902,235 + IAI46_13580 0.70 +1.6
2,902,236 - IAI46_13580 0.70 +0.9
2,902,236 - IAI46_13580 0.70 +0.1
2,902,289 + IAI46_13580 0.82 +1.4
2,902,289 + IAI46_13580 0.82 +0.0
2,902,307 + IAI46_13580 0.86 +0.3
2,902,435 + IAI46_13585 0.13 +0.7
2,902,475 + IAI46_13585 0.21 +1.6
2,902,537 + IAI46_13585 0.35 +0.0
2,902,665 + IAI46_13585 0.62 +0.7
2,902,834 + -0.5
2,902,962 - IAI46_13590 0.17 +0.8
2,902,962 - IAI46_13590 0.17 +0.8
2,903,013 - IAI46_13590 0.28 +0.3
2,903,019 + IAI46_13590 0.30 +1.2
2,903,019 + IAI46_13590 0.30 +1.1
2,903,072 + IAI46_13590 0.42 +2.0
2,903,072 + IAI46_13590 0.42 +0.9
2,903,073 - IAI46_13590 0.42 +1.0
2,903,076 - IAI46_13590 0.43 +0.5
2,903,076 - IAI46_13590 0.43 +1.3
2,903,095 - IAI46_13590 0.48 +0.9
2,903,116 - IAI46_13590 0.52 +0.7
2,903,192 - IAI46_13590 0.70 +0.9
2,903,197 + IAI46_13590 0.71 +0.3
2,903,197 + IAI46_13590 0.71 +0.9
2,903,198 - IAI46_13590 0.72 +0.6
2,903,198 - IAI46_13590 0.72 +1.0
2,903,203 - IAI46_13590 0.73 -0.0
2,903,214 + IAI46_13590 0.75 +0.2
2,903,214 + IAI46_13590 0.75 -1.8
2,903,240 + IAI46_13590 0.81 -0.0
2,903,241 - IAI46_13590 0.82 +0.6
2,903,255 + IAI46_13590 0.85 +0.0
2,903,302 - +0.5
2,903,302 - +0.1
2,903,324 - +1.3
2,903,354 - -0.0
2,903,360 + -3.9
2,903,383 - -0.9
2,903,384 + -1.0
2,903,385 - +1.9
2,903,385 - +0.5
2,903,392 + +0.6
2,903,427 - -0.1
2,903,427 - +0.2
2,903,427 - +0.2
2,903,427 - +0.3
2,903,446 + +1.1
2,903,446 + -0.7
2,903,446 + +0.7
2,903,446 + +0.3
2,903,446 + +0.7
2,903,465 - +0.9
2,903,480 - -0.2
2,903,485 + +0.2
2,903,486 - +0.7
2,903,516 - +0.4
2,903,522 + -0.7
2,903,569 + +1.9
2,903,636 + +0.8
2,903,636 + +1.2
2,903,693 + +0.6
2,903,694 - -0.4
2,903,694 - +0.4
2,903,768 - IAI46_13595 0.12 -0.2
2,903,768 - IAI46_13595 0.12 +0.5
2,903,768 - IAI46_13595 0.12 +1.1
2,903,768 - IAI46_13595 0.12 +0.1
2,903,854 - IAI46_13595 0.14 -0.3
2,903,854 - IAI46_13595 0.14 +0.6
2,904,009 + IAI46_13595 0.19 +0.1
2,904,079 + IAI46_13595 0.21 -1.8
2,904,142 - IAI46_13595 0.23 +0.5
2,904,221 - IAI46_13595 0.26 +0.3
2,904,221 - IAI46_13595 0.26 +0.2
2,904,221 - IAI46_13595 0.26 +1.2
2,904,307 + IAI46_13595 0.29 +0.4

Or see this region's nucleotide sequence