Strain Fitness in Serratia liquefaciens MT49 around IAI46_13230

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13225 and IAI46_13230 are separated by 25 nucleotidesIAI46_13230 and IAI46_13235 are separated by 9 nucleotides IAI46_13225: IAI46_13225 - DeoR/GlpR transcriptional regulator, at 2,822,025 to 2,822,795 _13225 IAI46_13230: IAI46_13230 - SIS domain-containing protein, at 2,822,821 to 2,823,987 _13230 IAI46_13235: IAI46_13235 - tagatose bisphosphate family class II aldolase, at 2,823,997 to 2,824,851 _13235 Position (kb) 2822 2823 2824Strain fitness (log2 ratio) -2 -1 0 1at 2821.961 kb on - strandat 2821.964 kb on - strandat 2821.999 kb on - strandat 2822.005 kb on - strandat 2822.029 kb on + strandat 2822.029 kb on + strandat 2822.034 kb on - strandat 2822.053 kb on + strandat 2822.184 kb on + strand, within IAI46_13225at 2822.508 kb on - strand, within IAI46_13225at 2823.277 kb on + strand, within IAI46_13230at 2823.482 kb on + strand, within IAI46_13230at 2823.514 kb on + strand, within IAI46_13230at 2823.645 kb on + strand, within IAI46_13230at 2823.695 kb on - strand, within IAI46_13230at 2823.961 kb on + strandat 2824.000 kb on + strandat 2824.163 kb on - strand, within IAI46_13235at 2824.271 kb on - strand, within IAI46_13235at 2824.436 kb on + strand, within IAI46_13235at 2824.437 kb on - strand, within IAI46_13235at 2824.544 kb on - strand, within IAI46_13235at 2824.772 kb on - strandat 2824.772 kb on - strandat 2824.859 kb on + strandat 2824.859 kb on + strandat 2824.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,821,961 - -0.9
2,821,964 - +0.1
2,821,999 - +0.1
2,822,005 - +0.7
2,822,029 + +0.7
2,822,029 + +1.1
2,822,034 - -0.1
2,822,053 + -1.6
2,822,184 + IAI46_13225 0.21 +0.3
2,822,508 - IAI46_13225 0.63 +0.1
2,823,277 + IAI46_13230 0.39 -1.0
2,823,482 + IAI46_13230 0.57 -2.4
2,823,514 + IAI46_13230 0.59 +0.1
2,823,645 + IAI46_13230 0.71 +1.1
2,823,695 - IAI46_13230 0.75 +0.9
2,823,961 + +0.7
2,824,000 + +0.2
2,824,163 - IAI46_13235 0.19 -1.6
2,824,271 - IAI46_13235 0.32 -0.1
2,824,436 + IAI46_13235 0.51 -0.1
2,824,437 - IAI46_13235 0.51 +0.4
2,824,544 - IAI46_13235 0.64 -1.1
2,824,772 - -1.6
2,824,772 - -1.0
2,824,859 + +1.3
2,824,859 + -0.4
2,824,947 - -0.3

Or see this region's nucleotide sequence