Strain Fitness in Serratia liquefaciens MT49 around IAI46_12940

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12935 and IAI46_12940 are separated by 32 nucleotidesIAI46_12940 and IAI46_12945 overlap by 4 nucleotides IAI46_12935: IAI46_12935 - alpha-glucosidase, at 2,758,962 to 2,760,323 _12935 IAI46_12940: IAI46_12940 - carbohydrate ABC transporter permease, at 2,760,356 to 2,761,201 _12940 IAI46_12945: IAI46_12945 - sugar ABC transporter permease, at 2,761,198 to 2,762,193 _12945 Position (kb) 2760 2761 2762Strain fitness (log2 ratio) -2 -1 0 1at 2759.378 kb on - strand, within IAI46_12935at 2759.386 kb on + strand, within IAI46_12935at 2759.436 kb on - strand, within IAI46_12935at 2759.586 kb on - strand, within IAI46_12935at 2759.602 kb on + strand, within IAI46_12935at 2759.641 kb on + strand, within IAI46_12935at 2759.642 kb on - strand, within IAI46_12935at 2759.642 kb on - strand, within IAI46_12935at 2759.642 kb on - strand, within IAI46_12935at 2759.696 kb on - strand, within IAI46_12935at 2759.696 kb on - strand, within IAI46_12935at 2759.786 kb on - strand, within IAI46_12935at 2759.951 kb on + strand, within IAI46_12935at 2759.999 kb on - strand, within IAI46_12935at 2760.080 kb on + strand, within IAI46_12935at 2760.622 kb on + strand, within IAI46_12940at 2760.757 kb on + strand, within IAI46_12940at 2760.759 kb on + strand, within IAI46_12940at 2760.789 kb on + strand, within IAI46_12940at 2760.880 kb on - strand, within IAI46_12940at 2761.108 kb on - strand, within IAI46_12940at 2761.174 kb on - strandat 2761.237 kb on - strandat 2761.270 kb on - strandat 2761.382 kb on + strand, within IAI46_12945at 2761.450 kb on - strand, within IAI46_12945at 2761.517 kb on + strand, within IAI46_12945at 2761.692 kb on - strand, within IAI46_12945at 2761.943 kb on + strand, within IAI46_12945at 2761.944 kb on - strand, within IAI46_12945at 2762.007 kb on - strand, within IAI46_12945

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,759,378 - IAI46_12935 0.31 +0.9
2,759,386 + IAI46_12935 0.31 -0.4
2,759,436 - IAI46_12935 0.35 +0.7
2,759,586 - IAI46_12935 0.46 -0.8
2,759,602 + IAI46_12935 0.47 -1.1
2,759,641 + IAI46_12935 0.50 -2.1
2,759,642 - IAI46_12935 0.50 -1.1
2,759,642 - IAI46_12935 0.50 -0.1
2,759,642 - IAI46_12935 0.50 -0.1
2,759,696 - IAI46_12935 0.54 -0.2
2,759,696 - IAI46_12935 0.54 -0.2
2,759,786 - IAI46_12935 0.60 +0.5
2,759,951 + IAI46_12935 0.73 +0.3
2,759,999 - IAI46_12935 0.76 -0.3
2,760,080 + IAI46_12935 0.82 -0.2
2,760,622 + IAI46_12940 0.31 +1.0
2,760,757 + IAI46_12940 0.47 -0.3
2,760,759 + IAI46_12940 0.48 +0.6
2,760,789 + IAI46_12940 0.51 +0.2
2,760,880 - IAI46_12940 0.62 -0.7
2,761,108 - IAI46_12940 0.89 +0.1
2,761,174 - -0.2
2,761,237 - +0.2
2,761,270 - +0.5
2,761,382 + IAI46_12945 0.18 +1.0
2,761,450 - IAI46_12945 0.25 -0.7
2,761,517 + IAI46_12945 0.32 +0.7
2,761,692 - IAI46_12945 0.50 +0.9
2,761,943 + IAI46_12945 0.75 -0.5
2,761,944 - IAI46_12945 0.75 -1.0
2,762,007 - IAI46_12945 0.81 +0.1

Or see this region's nucleotide sequence