Strain Fitness in Serratia liquefaciens MT49 around IAI46_12345

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12340 and IAI46_12345 are separated by 855 nucleotidesIAI46_12345 and IAI46_12350 are separated by 132 nucleotides IAI46_12340: IAI46_12340 - glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase, at 2,619,060 to 2,621,495 _12340 IAI46_12345: IAI46_12345 - LysR family transcriptional regulator, at 2,622,351 to 2,623,238 _12345 IAI46_12350: IAI46_12350 - zinc-binding dehydrogenase, at 2,623,371 to 2,624,357 _12350 Position (kb) 2622 2623 2624Strain fitness (log2 ratio) -2 -1 0 1at 2621.363 kb on - strandat 2621.466 kb on + strandat 2621.642 kb on + strandat 2621.667 kb on - strandat 2621.786 kb on - strandat 2621.811 kb on - strandat 2621.822 kb on - strandat 2621.846 kb on - strandat 2621.881 kb on - strandat 2621.906 kb on + strandat 2621.906 kb on + strandat 2622.000 kb on + strandat 2622.043 kb on + strandat 2622.043 kb on + strandat 2622.057 kb on - strandat 2622.059 kb on - strandat 2622.215 kb on + strandat 2622.240 kb on + strandat 2622.248 kb on + strandat 2622.373 kb on + strandat 2622.455 kb on + strand, within IAI46_12345at 2622.487 kb on - strand, within IAI46_12345at 2622.540 kb on + strand, within IAI46_12345at 2622.580 kb on - strand, within IAI46_12345at 2622.733 kb on - strand, within IAI46_12345at 2622.735 kb on + strand, within IAI46_12345at 2622.736 kb on - strand, within IAI46_12345at 2622.767 kb on - strand, within IAI46_12345at 2622.767 kb on - strand, within IAI46_12345at 2622.791 kb on + strand, within IAI46_12345at 2622.972 kb on - strand, within IAI46_12345at 2623.045 kb on + strand, within IAI46_12345at 2623.239 kb on - strandat 2623.331 kb on + strandat 2623.659 kb on + strand, within IAI46_12350at 2623.660 kb on - strand, within IAI46_12350at 2623.752 kb on + strand, within IAI46_12350at 2623.753 kb on - strand, within IAI46_12350at 2623.784 kb on - strand, within IAI46_12350at 2623.795 kb on + strand, within IAI46_12350at 2623.908 kb on - strand, within IAI46_12350at 2624.086 kb on + strand, within IAI46_12350

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,621,363 - -0.9
2,621,466 + +0.2
2,621,642 + +0.5
2,621,667 - +0.7
2,621,786 - -1.9
2,621,811 - +0.9
2,621,822 - -0.6
2,621,846 - +1.5
2,621,881 - -0.2
2,621,906 + +0.2
2,621,906 + +0.5
2,622,000 + -0.3
2,622,043 + +0.7
2,622,043 + +0.7
2,622,057 - -1.1
2,622,059 - +0.5
2,622,215 + -0.5
2,622,240 + -0.7
2,622,248 + +1.1
2,622,373 + +1.5
2,622,455 + IAI46_12345 0.12 -0.5
2,622,487 - IAI46_12345 0.15 +0.8
2,622,540 + IAI46_12345 0.21 -0.7
2,622,580 - IAI46_12345 0.26 +0.7
2,622,733 - IAI46_12345 0.43 +1.4
2,622,735 + IAI46_12345 0.43 +0.6
2,622,736 - IAI46_12345 0.43 -0.4
2,622,767 - IAI46_12345 0.47 -0.5
2,622,767 - IAI46_12345 0.47 -0.5
2,622,791 + IAI46_12345 0.50 -0.5
2,622,972 - IAI46_12345 0.70 +0.3
2,623,045 + IAI46_12345 0.78 -0.1
2,623,239 - +0.3
2,623,331 + +0.3
2,623,659 + IAI46_12350 0.29 -0.8
2,623,660 - IAI46_12350 0.29 +0.9
2,623,752 + IAI46_12350 0.39 -0.2
2,623,753 - IAI46_12350 0.39 -0.2
2,623,784 - IAI46_12350 0.42 +0.9
2,623,795 + IAI46_12350 0.43 +0.7
2,623,908 - IAI46_12350 0.54 -0.3
2,624,086 + IAI46_12350 0.72 +0.0

Or see this region's nucleotide sequence