Strain Fitness in Serratia liquefaciens MT49 around IAI46_10915

Experiment: dichromate 20 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_10910 and IAI46_10915 are separated by 12 nucleotidesIAI46_10915 and IAI46_10920 are separated by 256 nucleotides IAI46_10910: IAI46_10910 - GMC family oxidoreductase, at 2,304,930 to 2,306,711 _10910 IAI46_10915: IAI46_10915 - cytochrome c, at 2,306,724 to 2,308,061 _10915 IAI46_10920: IAI46_10920 - HAAAP family serine/threonine permease, at 2,308,318 to 2,309,601 _10920 Position (kb) 2306 2307 2308 2309Strain fitness (log2 ratio) -1 0 1at 2305.754 kb on + strand, within IAI46_10910at 2305.815 kb on + strand, within IAI46_10910at 2306.014 kb on + strand, within IAI46_10910at 2306.015 kb on - strand, within IAI46_10910at 2306.017 kb on - strand, within IAI46_10910at 2306.017 kb on - strand, within IAI46_10910at 2306.223 kb on + strand, within IAI46_10910at 2306.225 kb on + strand, within IAI46_10910at 2306.225 kb on + strand, within IAI46_10910at 2306.226 kb on - strand, within IAI46_10910at 2306.280 kb on + strand, within IAI46_10910at 2306.302 kb on - strand, within IAI46_10910at 2306.382 kb on + strand, within IAI46_10910at 2306.476 kb on - strand, within IAI46_10910at 2306.545 kb on - strandat 2306.567 kb on + strandat 2306.572 kb on + strandat 2306.614 kb on - strandat 2306.646 kb on + strandat 2306.710 kb on - strandat 2306.824 kb on - strandat 2306.926 kb on - strand, within IAI46_10915at 2307.034 kb on - strand, within IAI46_10915at 2307.093 kb on + strand, within IAI46_10915at 2307.093 kb on + strand, within IAI46_10915at 2307.094 kb on - strand, within IAI46_10915at 2307.268 kb on - strand, within IAI46_10915at 2307.268 kb on - strand, within IAI46_10915at 2307.306 kb on - strand, within IAI46_10915at 2307.315 kb on - strand, within IAI46_10915at 2307.363 kb on + strand, within IAI46_10915at 2307.364 kb on - strand, within IAI46_10915at 2307.532 kb on - strand, within IAI46_10915at 2307.543 kb on + strand, within IAI46_10915at 2307.543 kb on + strand, within IAI46_10915at 2307.690 kb on + strand, within IAI46_10915at 2307.730 kb on + strand, within IAI46_10915at 2307.730 kb on + strand, within IAI46_10915at 2307.731 kb on - strand, within IAI46_10915at 2307.807 kb on - strand, within IAI46_10915at 2307.821 kb on + strand, within IAI46_10915at 2307.995 kb on + strandat 2307.996 kb on - strandat 2308.134 kb on + strandat 2308.202 kb on + strandat 2308.249 kb on - strandat 2308.308 kb on - strandat 2308.318 kb on - strandat 2308.323 kb on + strandat 2308.326 kb on + strandat 2308.326 kb on + strandat 2308.327 kb on - strandat 2308.409 kb on - strandat 2308.517 kb on + strand, within IAI46_10920at 2308.634 kb on - strand, within IAI46_10920at 2308.666 kb on + strand, within IAI46_10920at 2308.666 kb on + strand, within IAI46_10920at 2308.667 kb on - strand, within IAI46_10920at 2308.667 kb on - strand, within IAI46_10920at 2308.855 kb on - strand, within IAI46_10920at 2308.864 kb on + strand, within IAI46_10920at 2308.865 kb on - strand, within IAI46_10920at 2308.998 kb on + strand, within IAI46_10920at 2309.032 kb on + strand, within IAI46_10920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
remove
2,305,754 + IAI46_10910 0.46 -1.2
2,305,815 + IAI46_10910 0.50 -0.3
2,306,014 + IAI46_10910 0.61 +0.7
2,306,015 - IAI46_10910 0.61 -1.4
2,306,017 - IAI46_10910 0.61 +0.0
2,306,017 - IAI46_10910 0.61 +0.8
2,306,223 + IAI46_10910 0.73 +0.1
2,306,225 + IAI46_10910 0.73 -1.1
2,306,225 + IAI46_10910 0.73 -0.6
2,306,226 - IAI46_10910 0.73 +0.0
2,306,280 + IAI46_10910 0.76 -0.2
2,306,302 - IAI46_10910 0.77 +0.2
2,306,382 + IAI46_10910 0.81 +0.2
2,306,476 - IAI46_10910 0.87 -0.2
2,306,545 - +1.0
2,306,567 + +0.3
2,306,572 + -0.5
2,306,614 - +0.2
2,306,646 + +0.2
2,306,710 - -0.2
2,306,824 - +0.7
2,306,926 - IAI46_10915 0.15 -0.4
2,307,034 - IAI46_10915 0.23 +0.2
2,307,093 + IAI46_10915 0.28 -0.9
2,307,093 + IAI46_10915 0.28 -0.5
2,307,094 - IAI46_10915 0.28 +0.0
2,307,268 - IAI46_10915 0.41 +0.6
2,307,268 - IAI46_10915 0.41 -0.5
2,307,306 - IAI46_10915 0.43 +0.4
2,307,315 - IAI46_10915 0.44 +1.1
2,307,363 + IAI46_10915 0.48 +0.3
2,307,364 - IAI46_10915 0.48 +0.7
2,307,532 - IAI46_10915 0.60 +0.2
2,307,543 + IAI46_10915 0.61 -0.0
2,307,543 + IAI46_10915 0.61 -0.4
2,307,690 + IAI46_10915 0.72 +0.7
2,307,730 + IAI46_10915 0.75 +0.1
2,307,730 + IAI46_10915 0.75 +0.2
2,307,731 - IAI46_10915 0.75 +1.7
2,307,807 - IAI46_10915 0.81 -0.2
2,307,821 + IAI46_10915 0.82 +0.2
2,307,995 + -0.2
2,307,996 - +0.6
2,308,134 + +0.1
2,308,202 + -1.5
2,308,249 - -0.2
2,308,308 - -0.2
2,308,318 - +0.4
2,308,323 + -0.4
2,308,326 + -0.6
2,308,326 + -0.9
2,308,327 - -0.2
2,308,409 - +0.4
2,308,517 + IAI46_10920 0.15 -1.1
2,308,634 - IAI46_10920 0.25 +0.3
2,308,666 + IAI46_10920 0.27 +0.6
2,308,666 + IAI46_10920 0.27 +1.7
2,308,667 - IAI46_10920 0.27 +0.1
2,308,667 - IAI46_10920 0.27 +0.1
2,308,855 - IAI46_10920 0.42 -0.2
2,308,864 + IAI46_10920 0.43 +0.4
2,308,865 - IAI46_10920 0.43 -0.6
2,308,998 + IAI46_10920 0.53 +0.2
2,309,032 + IAI46_10920 0.56 +0.3

Or see this region's nucleotide sequence