Strain Fitness in Serratia liquefaciens MT49 around IAI46_09765

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09755 and IAI46_09760 are separated by 11 nucleotidesIAI46_09760 and IAI46_09765 are separated by 141 nucleotidesIAI46_09765 and IAI46_09770 are separated by 16 nucleotidesIAI46_09770 and IAI46_09775 are separated by 11 nucleotides IAI46_09755: IAI46_09755 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 2,068,348 to 2,069,310 _09755 IAI46_09760: IAI46_09760 - septum formation inhibitor Maf, at 2,069,322 to 2,069,903 _09760 IAI46_09765: IAI46_09765 - 23S rRNA accumulation protein YceD, at 2,070,045 to 2,070,566 _09765 IAI46_09770: IAI46_09770 - 50S ribosomal protein L32, at 2,070,583 to 2,070,750 _09770 IAI46_09775: IAI46_09775 - phosphate acyltransferase PlsX, at 2,070,762 to 2,071,796 _09775 Position (kb) 2070 2071Strain fitness (log2 ratio) -1 0 1at 2069.238 kb on + strandat 2069.313 kb on - strandat 2069.492 kb on - strand, within IAI46_09760at 2069.579 kb on - strand, within IAI46_09760at 2069.726 kb on - strand, within IAI46_09760at 2069.831 kb on + strand, within IAI46_09760at 2069.893 kb on - strandat 2069.928 kb on - strandat 2069.972 kb on + strandat 2069.973 kb on - strandat 2070.014 kb on + strandat 2070.030 kb on + strandat 2070.030 kb on + strandat 2070.082 kb on + strandat 2070.306 kb on + strand, within IAI46_09765at 2070.568 kb on + strandat 2070.575 kb on + strandat 2070.772 kb on + strandat 2070.851 kb on + strandat 2070.904 kb on + strand, within IAI46_09775at 2070.904 kb on + strand, within IAI46_09775at 2070.905 kb on - strand, within IAI46_09775at 2071.080 kb on - strand, within IAI46_09775at 2071.182 kb on - strand, within IAI46_09775at 2071.343 kb on + strand, within IAI46_09775at 2071.343 kb on + strand, within IAI46_09775at 2071.392 kb on + strand, within IAI46_09775at 2071.393 kb on - strand, within IAI46_09775at 2071.393 kb on - strand, within IAI46_09775at 2071.393 kb on - strand, within IAI46_09775at 2071.498 kb on + strand, within IAI46_09775at 2071.498 kb on + strand, within IAI46_09775at 2071.498 kb on + strand, within IAI46_09775at 2071.505 kb on - strand, within IAI46_09775

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,069,238 + +0.1
2,069,313 - -1.0
2,069,492 - IAI46_09760 0.29 +0.1
2,069,579 - IAI46_09760 0.44 -0.4
2,069,726 - IAI46_09760 0.69 -0.2
2,069,831 + IAI46_09760 0.87 +0.4
2,069,893 - -0.6
2,069,928 - -0.6
2,069,972 + -1.3
2,069,973 - -0.1
2,070,014 + -0.2
2,070,030 + -0.5
2,070,030 + +0.5
2,070,082 + -0.5
2,070,306 + IAI46_09765 0.50 -0.1
2,070,568 + -0.5
2,070,575 + -0.5
2,070,772 + +1.1
2,070,851 + +0.8
2,070,904 + IAI46_09775 0.14 +0.1
2,070,904 + IAI46_09775 0.14 -0.3
2,070,905 - IAI46_09775 0.14 +1.5
2,071,080 - IAI46_09775 0.31 -0.2
2,071,182 - IAI46_09775 0.41 +0.5
2,071,343 + IAI46_09775 0.56 -0.0
2,071,343 + IAI46_09775 0.56 +0.7
2,071,392 + IAI46_09775 0.61 -0.6
2,071,393 - IAI46_09775 0.61 +0.2
2,071,393 - IAI46_09775 0.61 +0.6
2,071,393 - IAI46_09775 0.61 +0.5
2,071,498 + IAI46_09775 0.71 +0.4
2,071,498 + IAI46_09775 0.71 -0.4
2,071,498 + IAI46_09775 0.71 +0.3
2,071,505 - IAI46_09775 0.72 -0.6

Or see this region's nucleotide sequence