Strain Fitness in Serratia liquefaciens MT49 around IAI46_08510

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08500 and IAI46_08505 are separated by 79 nucleotidesIAI46_08505 and IAI46_08510 are separated by 359 nucleotidesIAI46_08510 and IAI46_08515 are separated by 27 nucleotides IAI46_08500: IAI46_08500 - macrolide ABC transporter ATP-binding protein/permease MacB, at 1,809,078 to 1,811,024 _08500 IAI46_08505: IAI46_08505 - cold shock-like protein CspD, at 1,811,104 to 1,811,325 _08505 IAI46_08510: IAI46_08510 - ATP-dependent Clp protease adapter ClpS, at 1,811,685 to 1,812,005 _08510 IAI46_08515: IAI46_08515 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,812,033 to 1,814,312 _08515 Position (kb) 1811 1812 1813Strain fitness (log2 ratio) -2 -1 0 1at 1810.780 kb on + strand, within IAI46_08500at 1810.781 kb on - strand, within IAI46_08500at 1810.781 kb on - strand, within IAI46_08500at 1810.781 kb on - strand, within IAI46_08500at 1810.783 kb on + strand, within IAI46_08500at 1810.783 kb on + strand, within IAI46_08500at 1810.783 kb on + strand, within IAI46_08500at 1811.022 kb on + strandat 1811.033 kb on + strandat 1811.137 kb on - strand, within IAI46_08505at 1811.245 kb on + strand, within IAI46_08505at 1811.246 kb on - strand, within IAI46_08505at 1811.246 kb on - strand, within IAI46_08505at 1811.246 kb on - strand, within IAI46_08505at 1811.275 kb on - strand, within IAI46_08505at 1811.308 kb on - strandat 1811.313 kb on + strandat 1811.331 kb on + strandat 1811.331 kb on + strandat 1811.331 kb on + strandat 1811.332 kb on - strandat 1811.397 kb on - strandat 1811.444 kb on - strandat 1811.451 kb on - strandat 1811.619 kb on + strandat 1811.655 kb on + strandat 1811.656 kb on - strandat 1811.762 kb on + strand, within IAI46_08510at 1811.762 kb on + strand, within IAI46_08510at 1811.763 kb on - strand, within IAI46_08510at 1811.763 kb on - strand, within IAI46_08510at 1811.763 kb on - strand, within IAI46_08510at 1811.766 kb on + strand, within IAI46_08510at 1811.766 kb on + strand, within IAI46_08510at 1811.768 kb on + strand, within IAI46_08510at 1811.775 kb on - strand, within IAI46_08510at 1811.775 kb on - strand, within IAI46_08510at 1811.780 kb on + strand, within IAI46_08510at 1811.841 kb on + strand, within IAI46_08510at 1811.841 kb on + strand, within IAI46_08510at 1811.842 kb on - strand, within IAI46_08510at 1811.883 kb on + strand, within IAI46_08510at 1811.884 kb on - strand, within IAI46_08510at 1811.987 kb on + strandat 1812.009 kb on + strandat 1812.010 kb on - strandat 1812.017 kb on + strandat 1812.033 kb on - strandat 1812.174 kb on - strandat 1812.215 kb on + strandat 1812.355 kb on + strand, within IAI46_08515at 1812.396 kb on + strand, within IAI46_08515at 1812.631 kb on + strand, within IAI46_08515at 1812.766 kb on - strand, within IAI46_08515at 1812.804 kb on + strand, within IAI46_08515at 1812.804 kb on + strand, within IAI46_08515at 1812.804 kb on + strand, within IAI46_08515at 1812.830 kb on + strand, within IAI46_08515at 1812.995 kb on + strand, within IAI46_08515at 1812.996 kb on - strand, within IAI46_08515at 1812.999 kb on + strand, within IAI46_08515

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,810,780 + IAI46_08500 0.87 -0.8
1,810,781 - IAI46_08500 0.87 -0.4
1,810,781 - IAI46_08500 0.87 -0.6
1,810,781 - IAI46_08500 0.87 +0.5
1,810,783 + IAI46_08500 0.88 +0.2
1,810,783 + IAI46_08500 0.88 -0.6
1,810,783 + IAI46_08500 0.88 +0.8
1,811,022 + -0.3
1,811,033 + +1.2
1,811,137 - IAI46_08505 0.15 +0.4
1,811,245 + IAI46_08505 0.64 -0.0
1,811,246 - IAI46_08505 0.64 +0.8
1,811,246 - IAI46_08505 0.64 +0.7
1,811,246 - IAI46_08505 0.64 +0.7
1,811,275 - IAI46_08505 0.77 +0.2
1,811,308 - +0.2
1,811,313 + +0.0
1,811,331 + +0.4
1,811,331 + -0.1
1,811,331 + +0.3
1,811,332 - +0.8
1,811,397 - -1.5
1,811,444 - -1.4
1,811,451 - +1.3
1,811,619 + +0.0
1,811,655 + -0.2
1,811,656 - -0.1
1,811,762 + IAI46_08510 0.24 +0.1
1,811,762 + IAI46_08510 0.24 +0.7
1,811,763 - IAI46_08510 0.24 +1.2
1,811,763 - IAI46_08510 0.24 +1.3
1,811,763 - IAI46_08510 0.24 +0.4
1,811,766 + IAI46_08510 0.25 -0.1
1,811,766 + IAI46_08510 0.25 +1.4
1,811,768 + IAI46_08510 0.26 +0.2
1,811,775 - IAI46_08510 0.28 +0.2
1,811,775 - IAI46_08510 0.28 +0.3
1,811,780 + IAI46_08510 0.30 +0.2
1,811,841 + IAI46_08510 0.49 +0.8
1,811,841 + IAI46_08510 0.49 +0.4
1,811,842 - IAI46_08510 0.49 +0.6
1,811,883 + IAI46_08510 0.62 +1.2
1,811,884 - IAI46_08510 0.62 -0.2
1,811,987 + +0.6
1,812,009 + +0.7
1,812,010 - -0.6
1,812,017 + -0.8
1,812,033 - +0.3
1,812,174 - -2.4
1,812,215 + -0.4
1,812,355 + IAI46_08515 0.14 +0.8
1,812,396 + IAI46_08515 0.16 +0.5
1,812,631 + IAI46_08515 0.26 -0.3
1,812,766 - IAI46_08515 0.32 +0.2
1,812,804 + IAI46_08515 0.34 -0.3
1,812,804 + IAI46_08515 0.34 -0.8
1,812,804 + IAI46_08515 0.34 +0.2
1,812,830 + IAI46_08515 0.35 +0.3
1,812,995 + IAI46_08515 0.42 +0.9
1,812,996 - IAI46_08515 0.42 -1.0
1,812,999 + IAI46_08515 0.42 +0.2

Or see this region's nucleotide sequence