Strain Fitness in Serratia liquefaciens MT49 around IAI46_08500

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08495 and IAI46_08500 overlap by 1 nucleotidesIAI46_08500 and IAI46_08505 are separated by 79 nucleotidesIAI46_08505 and IAI46_08510 are separated by 359 nucleotides IAI46_08495: IAI46_08495 - macrolide transporter subunit MacA, at 1,807,936 to 1,809,078 _08495 IAI46_08500: IAI46_08500 - macrolide ABC transporter ATP-binding protein/permease MacB, at 1,809,078 to 1,811,024 _08500 IAI46_08505: IAI46_08505 - cold shock-like protein CspD, at 1,811,104 to 1,811,325 _08505 IAI46_08510: IAI46_08510 - ATP-dependent Clp protease adapter ClpS, at 1,811,685 to 1,812,005 _08510 Position (kb) 1809 1810 1811 1812Strain fitness (log2 ratio) -2 -1 0 1at 1808.191 kb on + strand, within IAI46_08495at 1808.191 kb on + strand, within IAI46_08495at 1808.191 kb on + strand, within IAI46_08495at 1808.639 kb on + strand, within IAI46_08495at 1808.718 kb on + strand, within IAI46_08495at 1808.718 kb on + strand, within IAI46_08495at 1808.788 kb on + strand, within IAI46_08495at 1808.789 kb on - strand, within IAI46_08495at 1808.856 kb on + strand, within IAI46_08495at 1808.856 kb on + strand, within IAI46_08495at 1808.856 kb on + strand, within IAI46_08495at 1808.857 kb on - strand, within IAI46_08495at 1808.890 kb on - strand, within IAI46_08495at 1808.997 kb on + strandat 1808.997 kb on + strandat 1808.997 kb on + strandat 1808.997 kb on + strandat 1809.113 kb on + strandat 1809.114 kb on - strandat 1809.117 kb on + strandat 1809.117 kb on + strandat 1809.117 kb on + strandat 1809.118 kb on - strandat 1809.412 kb on + strand, within IAI46_08500at 1809.412 kb on + strand, within IAI46_08500at 1809.413 kb on - strand, within IAI46_08500at 1809.414 kb on + strand, within IAI46_08500at 1809.414 kb on + strand, within IAI46_08500at 1809.463 kb on + strand, within IAI46_08500at 1809.479 kb on - strand, within IAI46_08500at 1809.504 kb on - strand, within IAI46_08500at 1809.504 kb on - strand, within IAI46_08500at 1809.662 kb on + strand, within IAI46_08500at 1809.662 kb on + strand, within IAI46_08500at 1809.662 kb on + strand, within IAI46_08500at 1809.663 kb on - strand, within IAI46_08500at 1809.986 kb on + strand, within IAI46_08500at 1810.013 kb on - strand, within IAI46_08500at 1810.016 kb on + strand, within IAI46_08500at 1810.016 kb on + strand, within IAI46_08500at 1810.016 kb on + strand, within IAI46_08500at 1810.016 kb on + strand, within IAI46_08500at 1810.016 kb on + strand, within IAI46_08500at 1810.016 kb on + strand, within IAI46_08500at 1810.017 kb on - strand, within IAI46_08500at 1810.017 kb on - strand, within IAI46_08500at 1810.017 kb on - strand, within IAI46_08500at 1810.017 kb on - strand, within IAI46_08500at 1810.017 kb on - strand, within IAI46_08500at 1810.017 kb on - strand, within IAI46_08500at 1810.017 kb on - strand, within IAI46_08500at 1810.017 kb on - strand, within IAI46_08500at 1810.021 kb on - strand, within IAI46_08500at 1810.074 kb on + strand, within IAI46_08500at 1810.108 kb on - strand, within IAI46_08500at 1810.375 kb on + strand, within IAI46_08500at 1810.403 kb on + strand, within IAI46_08500at 1810.403 kb on + strand, within IAI46_08500at 1810.404 kb on - strand, within IAI46_08500at 1810.515 kb on + strand, within IAI46_08500at 1810.515 kb on + strand, within IAI46_08500at 1810.590 kb on + strand, within IAI46_08500at 1810.591 kb on - strand, within IAI46_08500at 1810.591 kb on - strand, within IAI46_08500at 1810.591 kb on - strand, within IAI46_08500at 1810.591 kb on - strand, within IAI46_08500at 1810.592 kb on + strand, within IAI46_08500at 1810.634 kb on + strand, within IAI46_08500at 1810.780 kb on + strand, within IAI46_08500at 1810.781 kb on - strand, within IAI46_08500at 1810.781 kb on - strand, within IAI46_08500at 1810.781 kb on - strand, within IAI46_08500at 1810.783 kb on + strand, within IAI46_08500at 1810.783 kb on + strand, within IAI46_08500at 1810.783 kb on + strand, within IAI46_08500at 1811.022 kb on + strandat 1811.033 kb on + strandat 1811.137 kb on - strand, within IAI46_08505at 1811.245 kb on + strand, within IAI46_08505at 1811.246 kb on - strand, within IAI46_08505at 1811.246 kb on - strand, within IAI46_08505at 1811.246 kb on - strand, within IAI46_08505at 1811.275 kb on - strand, within IAI46_08505at 1811.308 kb on - strandat 1811.313 kb on + strandat 1811.331 kb on + strandat 1811.331 kb on + strandat 1811.331 kb on + strandat 1811.332 kb on - strandat 1811.397 kb on - strandat 1811.444 kb on - strandat 1811.451 kb on - strandat 1811.619 kb on + strandat 1811.655 kb on + strandat 1811.656 kb on - strandat 1811.762 kb on + strand, within IAI46_08510at 1811.762 kb on + strand, within IAI46_08510at 1811.763 kb on - strand, within IAI46_08510at 1811.763 kb on - strand, within IAI46_08510at 1811.763 kb on - strand, within IAI46_08510at 1811.766 kb on + strand, within IAI46_08510at 1811.766 kb on + strand, within IAI46_08510at 1811.768 kb on + strand, within IAI46_08510at 1811.775 kb on - strand, within IAI46_08510at 1811.775 kb on - strand, within IAI46_08510at 1811.780 kb on + strand, within IAI46_08510at 1811.841 kb on + strand, within IAI46_08510at 1811.841 kb on + strand, within IAI46_08510at 1811.842 kb on - strand, within IAI46_08510at 1811.883 kb on + strand, within IAI46_08510at 1811.884 kb on - strand, within IAI46_08510at 1811.987 kb on + strandat 1812.009 kb on + strandat 1812.010 kb on - strandat 1812.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,808,191 + IAI46_08495 0.22 +0.8
1,808,191 + IAI46_08495 0.22 +0.2
1,808,191 + IAI46_08495 0.22 +0.6
1,808,639 + IAI46_08495 0.62 +0.8
1,808,718 + IAI46_08495 0.68 +0.4
1,808,718 + IAI46_08495 0.68 +0.4
1,808,788 + IAI46_08495 0.75 +0.6
1,808,789 - IAI46_08495 0.75 +1.3
1,808,856 + IAI46_08495 0.80 -0.1
1,808,856 + IAI46_08495 0.80 +0.8
1,808,856 + IAI46_08495 0.80 -0.5
1,808,857 - IAI46_08495 0.81 -1.0
1,808,890 - IAI46_08495 0.83 -0.9
1,808,997 + +1.1
1,808,997 + +0.0
1,808,997 + +1.3
1,808,997 + +0.2
1,809,113 + -0.5
1,809,114 - -0.0
1,809,117 + +0.6
1,809,117 + +1.0
1,809,117 + +0.1
1,809,118 - -1.9
1,809,412 + IAI46_08500 0.17 +0.3
1,809,412 + IAI46_08500 0.17 -0.6
1,809,413 - IAI46_08500 0.17 -0.5
1,809,414 + IAI46_08500 0.17 +1.3
1,809,414 + IAI46_08500 0.17 -0.2
1,809,463 + IAI46_08500 0.20 +0.5
1,809,479 - IAI46_08500 0.21 +0.3
1,809,504 - IAI46_08500 0.22 +0.1
1,809,504 - IAI46_08500 0.22 -1.4
1,809,662 + IAI46_08500 0.30 +0.3
1,809,662 + IAI46_08500 0.30 +0.8
1,809,662 + IAI46_08500 0.30 -0.6
1,809,663 - IAI46_08500 0.30 -1.4
1,809,986 + IAI46_08500 0.47 +0.1
1,810,013 - IAI46_08500 0.48 +1.5
1,810,016 + IAI46_08500 0.48 -0.0
1,810,016 + IAI46_08500 0.48 +0.9
1,810,016 + IAI46_08500 0.48 -0.2
1,810,016 + IAI46_08500 0.48 -0.9
1,810,016 + IAI46_08500 0.48 +0.0
1,810,016 + IAI46_08500 0.48 -1.0
1,810,017 - IAI46_08500 0.48 +0.6
1,810,017 - IAI46_08500 0.48 +0.0
1,810,017 - IAI46_08500 0.48 +0.2
1,810,017 - IAI46_08500 0.48 -0.0
1,810,017 - IAI46_08500 0.48 +1.1
1,810,017 - IAI46_08500 0.48 +0.4
1,810,017 - IAI46_08500 0.48 -0.7
1,810,017 - IAI46_08500 0.48 +0.4
1,810,021 - IAI46_08500 0.48 -0.8
1,810,074 + IAI46_08500 0.51 +0.7
1,810,108 - IAI46_08500 0.53 +0.5
1,810,375 + IAI46_08500 0.67 +0.5
1,810,403 + IAI46_08500 0.68 -0.4
1,810,403 + IAI46_08500 0.68 +0.3
1,810,404 - IAI46_08500 0.68 +1.0
1,810,515 + IAI46_08500 0.74 -1.0
1,810,515 + IAI46_08500 0.74 +0.8
1,810,590 + IAI46_08500 0.78 +1.0
1,810,591 - IAI46_08500 0.78 +0.7
1,810,591 - IAI46_08500 0.78 +0.5
1,810,591 - IAI46_08500 0.78 -1.2
1,810,591 - IAI46_08500 0.78 +0.6
1,810,592 + IAI46_08500 0.78 +0.7
1,810,634 + IAI46_08500 0.80 +1.3
1,810,780 + IAI46_08500 0.87 -0.8
1,810,781 - IAI46_08500 0.87 -0.4
1,810,781 - IAI46_08500 0.87 -0.6
1,810,781 - IAI46_08500 0.87 +0.5
1,810,783 + IAI46_08500 0.88 +0.2
1,810,783 + IAI46_08500 0.88 -0.6
1,810,783 + IAI46_08500 0.88 +0.8
1,811,022 + -0.3
1,811,033 + +1.2
1,811,137 - IAI46_08505 0.15 +0.4
1,811,245 + IAI46_08505 0.64 -0.0
1,811,246 - IAI46_08505 0.64 +0.8
1,811,246 - IAI46_08505 0.64 +0.7
1,811,246 - IAI46_08505 0.64 +0.7
1,811,275 - IAI46_08505 0.77 +0.2
1,811,308 - +0.2
1,811,313 + +0.0
1,811,331 + +0.4
1,811,331 + -0.1
1,811,331 + +0.3
1,811,332 - +0.8
1,811,397 - -1.5
1,811,444 - -1.4
1,811,451 - +1.3
1,811,619 + +0.0
1,811,655 + -0.2
1,811,656 - -0.1
1,811,762 + IAI46_08510 0.24 +0.1
1,811,762 + IAI46_08510 0.24 +0.7
1,811,763 - IAI46_08510 0.24 +1.2
1,811,763 - IAI46_08510 0.24 +1.3
1,811,763 - IAI46_08510 0.24 +0.4
1,811,766 + IAI46_08510 0.25 -0.1
1,811,766 + IAI46_08510 0.25 +1.4
1,811,768 + IAI46_08510 0.26 +0.2
1,811,775 - IAI46_08510 0.28 +0.2
1,811,775 - IAI46_08510 0.28 +0.3
1,811,780 + IAI46_08510 0.30 +0.2
1,811,841 + IAI46_08510 0.49 +0.8
1,811,841 + IAI46_08510 0.49 +0.4
1,811,842 - IAI46_08510 0.49 +0.6
1,811,883 + IAI46_08510 0.62 +1.2
1,811,884 - IAI46_08510 0.62 -0.2
1,811,987 + +0.6
1,812,009 + +0.7
1,812,010 - -0.6
1,812,017 + -0.8

Or see this region's nucleotide sequence