Strain Fitness in Serratia liquefaciens MT49 around IAI46_08185

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08175 and IAI46_08180 are separated by 311 nucleotidesIAI46_08180 and IAI46_08185 overlap by 7 nucleotidesIAI46_08185 and IAI46_08190 overlap by 19 nucleotidesIAI46_08190 and IAI46_08195 are separated by 5 nucleotides IAI46_08175: IAI46_08175 - transposase domain-containing protein, at 1,741,671 to 1,742,698 _08175 IAI46_08180: IAI46_08180 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 1,743,010 to 1,743,630 _08180 IAI46_08185: IAI46_08185 - imidazole glycerol phosphate synthase subunit HisF, at 1,743,624 to 1,744,400 _08185 IAI46_08190: IAI46_08190 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,744,382 to 1,745,119 _08190 IAI46_08195: IAI46_08195 - imidazole glycerol phosphate synthase subunit HisH, at 1,745,125 to 1,745,715 _08195 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -2 -1 0 1 2at 1742.693 kb on - strandat 1742.717 kb on + strandat 1742.751 kb on + strandat 1742.752 kb on - strandat 1742.755 kb on - strandat 1742.764 kb on - strandat 1742.778 kb on - strandat 1742.901 kb on + strandat 1742.902 kb on - strandat 1742.902 kb on - strandat 1742.910 kb on - strandat 1742.979 kb on - strandat 1742.979 kb on - strandat 1742.979 kb on - strandat 1743.002 kb on + strandat 1743.003 kb on - strandat 1743.011 kb on + strandat 1743.012 kb on - strandat 1743.195 kb on + strand, within IAI46_08180at 1743.230 kb on + strand, within IAI46_08180at 1743.327 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.410 kb on - strand, within IAI46_08180at 1743.463 kb on - strand, within IAI46_08180at 1743.463 kb on - strand, within IAI46_08180at 1743.525 kb on - strand, within IAI46_08180at 1743.839 kb on - strand, within IAI46_08185at 1743.967 kb on + strand, within IAI46_08185at 1743.968 kb on - strand, within IAI46_08185at 1743.968 kb on - strand, within IAI46_08185at 1744.252 kb on + strand, within IAI46_08185at 1744.286 kb on - strand, within IAI46_08185at 1744.350 kb on + strandat 1744.421 kb on - strandat 1744.426 kb on + strandat 1744.641 kb on + strand, within IAI46_08190at 1744.765 kb on - strand, within IAI46_08190at 1744.986 kb on - strand, within IAI46_08190at 1744.986 kb on - strand, within IAI46_08190at 1744.986 kb on - strand, within IAI46_08190at 1745.041 kb on - strand, within IAI46_08190at 1745.113 kb on + strandat 1745.114 kb on - strandat 1745.114 kb on - strandat 1745.127 kb on - strandat 1745.127 kb on - strandat 1745.282 kb on + strand, within IAI46_08195at 1745.282 kb on + strand, within IAI46_08195at 1745.283 kb on - strand, within IAI46_08195at 1745.283 kb on - strand, within IAI46_08195at 1745.304 kb on - strand, within IAI46_08195at 1745.304 kb on - strand, within IAI46_08195

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,742,693 - +0.4
1,742,717 + +0.0
1,742,751 + -0.1
1,742,752 - +0.4
1,742,755 - +0.6
1,742,764 - +0.3
1,742,778 - +0.8
1,742,901 + +1.5
1,742,902 - +0.3
1,742,902 - -0.5
1,742,910 - -0.2
1,742,979 - +0.2
1,742,979 - -0.2
1,742,979 - +0.4
1,743,002 + +1.2
1,743,003 - -0.1
1,743,011 + -0.8
1,743,012 - +0.7
1,743,195 + IAI46_08180 0.30 +1.1
1,743,230 + IAI46_08180 0.35 +0.0
1,743,327 + IAI46_08180 0.51 -0.3
1,743,409 + IAI46_08180 0.64 -1.2
1,743,409 + IAI46_08180 0.64 -0.0
1,743,409 + IAI46_08180 0.64 -0.3
1,743,409 + IAI46_08180 0.64 +0.5
1,743,410 - IAI46_08180 0.64 +1.2
1,743,463 - IAI46_08180 0.73 +0.1
1,743,463 - IAI46_08180 0.73 -1.8
1,743,525 - IAI46_08180 0.83 +1.1
1,743,839 - IAI46_08185 0.28 -0.8
1,743,967 + IAI46_08185 0.44 -0.8
1,743,968 - IAI46_08185 0.44 -0.8
1,743,968 - IAI46_08185 0.44 +0.2
1,744,252 + IAI46_08185 0.81 +2.1
1,744,286 - IAI46_08185 0.85 -1.4
1,744,350 + +0.6
1,744,421 - +0.4
1,744,426 + +0.5
1,744,641 + IAI46_08190 0.35 +0.7
1,744,765 - IAI46_08190 0.52 +0.2
1,744,986 - IAI46_08190 0.82 -0.1
1,744,986 - IAI46_08190 0.82 -1.5
1,744,986 - IAI46_08190 0.82 -0.7
1,745,041 - IAI46_08190 0.89 -0.8
1,745,113 + -0.4
1,745,114 - -1.8
1,745,114 - +0.5
1,745,127 - +0.8
1,745,127 - +1.0
1,745,282 + IAI46_08195 0.27 -0.8
1,745,282 + IAI46_08195 0.27 -2.6
1,745,283 - IAI46_08195 0.27 -0.1
1,745,283 - IAI46_08195 0.27 +0.2
1,745,304 - IAI46_08195 0.30 -0.3
1,745,304 - IAI46_08195 0.30 -1.6

Or see this region's nucleotide sequence