Strain Fitness in Serratia liquefaciens MT49 around IAI46_06695

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06685 and IAI46_06690 are separated by 4 nucleotidesIAI46_06690 and IAI46_06695 are separated by 14 nucleotidesIAI46_06695 and IAI46_06700 are separated by 14 nucleotidesIAI46_06700 and IAI46_06705 overlap by 8 nucleotides IAI46_06685: IAI46_06685 - type 1 fimbrial protein, at 1,423,725 to 1,424,381 _06685 IAI46_06690: IAI46_06690 - fimbrial protein, at 1,424,386 to 1,424,886 _06690 IAI46_06695: IAI46_06695 - fimbrial protein, at 1,424,901 to 1,425,377 _06695 IAI46_06700: IAI46_06700 - fimbrial protein, at 1,425,392 to 1,425,919 _06700 IAI46_06705: IAI46_06705 - transposase, at 1,425,912 to 1,426,493 _06705 Position (kb) 1424 1425 1426Strain fitness (log2 ratio) -2 -1 0 1at 1423.983 kb on - strand, within IAI46_06685at 1424.024 kb on - strand, within IAI46_06685at 1424.063 kb on + strand, within IAI46_06685at 1424.104 kb on + strand, within IAI46_06685at 1424.104 kb on + strand, within IAI46_06685at 1424.105 kb on - strand, within IAI46_06685at 1424.182 kb on + strand, within IAI46_06685at 1424.182 kb on + strand, within IAI46_06685at 1424.183 kb on - strand, within IAI46_06685at 1424.296 kb on - strand, within IAI46_06685at 1424.303 kb on + strand, within IAI46_06685at 1424.303 kb on + strand, within IAI46_06685at 1424.373 kb on + strandat 1424.379 kb on + strandat 1424.380 kb on - strandat 1424.405 kb on + strandat 1424.453 kb on - strand, within IAI46_06690at 1424.453 kb on - strand, within IAI46_06690at 1424.484 kb on - strand, within IAI46_06690at 1424.532 kb on + strand, within IAI46_06690at 1424.532 kb on + strand, within IAI46_06690at 1424.590 kb on + strand, within IAI46_06690at 1424.612 kb on - strand, within IAI46_06690at 1424.703 kb on + strand, within IAI46_06690at 1424.776 kb on - strand, within IAI46_06690at 1424.780 kb on - strand, within IAI46_06690at 1424.780 kb on - strand, within IAI46_06690at 1424.879 kb on - strandat 1425.028 kb on + strand, within IAI46_06695at 1425.028 kb on + strand, within IAI46_06695at 1425.028 kb on + strand, within IAI46_06695at 1425.029 kb on - strand, within IAI46_06695at 1425.029 kb on - strand, within IAI46_06695at 1425.081 kb on + strand, within IAI46_06695at 1425.082 kb on - strand, within IAI46_06695at 1425.082 kb on - strand, within IAI46_06695at 1425.137 kb on + strand, within IAI46_06695at 1425.137 kb on + strand, within IAI46_06695at 1425.137 kb on + strand, within IAI46_06695at 1425.353 kb on + strandat 1425.369 kb on + strandat 1425.369 kb on + strandat 1425.370 kb on - strandat 1425.370 kb on - strandat 1425.387 kb on + strandat 1425.387 kb on + strandat 1425.388 kb on - strandat 1425.436 kb on - strandat 1425.466 kb on + strand, within IAI46_06700at 1425.557 kb on - strand, within IAI46_06700at 1425.557 kb on - strand, within IAI46_06700at 1425.557 kb on - strand, within IAI46_06700at 1425.560 kb on + strand, within IAI46_06700at 1425.560 kb on + strand, within IAI46_06700at 1425.561 kb on - strand, within IAI46_06700at 1425.561 kb on - strand, within IAI46_06700at 1425.566 kb on + strand, within IAI46_06700at 1425.566 kb on + strand, within IAI46_06700at 1425.567 kb on - strand, within IAI46_06700at 1425.567 kb on - strand, within IAI46_06700at 1425.568 kb on + strand, within IAI46_06700at 1425.569 kb on - strand, within IAI46_06700at 1425.569 kb on - strand, within IAI46_06700at 1425.827 kb on + strand, within IAI46_06700at 1425.827 kb on + strand, within IAI46_06700at 1425.827 kb on + strand, within IAI46_06700at 1425.827 kb on + strand, within IAI46_06700at 1425.860 kb on - strand, within IAI46_06700at 1425.860 kb on - strand, within IAI46_06700at 1425.917 kb on + strandat 1426.038 kb on + strand, within IAI46_06705at 1426.038 kb on + strand, within IAI46_06705at 1426.039 kb on - strand, within IAI46_06705at 1426.039 kb on - strand, within IAI46_06705at 1426.039 kb on - strand, within IAI46_06705at 1426.048 kb on + strand, within IAI46_06705at 1426.048 kb on + strand, within IAI46_06705at 1426.048 kb on + strand, within IAI46_06705at 1426.138 kb on + strand, within IAI46_06705at 1426.138 kb on + strand, within IAI46_06705at 1426.139 kb on - strand, within IAI46_06705at 1426.266 kb on + strand, within IAI46_06705at 1426.267 kb on - strand, within IAI46_06705at 1426.268 kb on + strand, within IAI46_06705at 1426.268 kb on + strand, within IAI46_06705at 1426.269 kb on - strand, within IAI46_06705at 1426.269 kb on - strand, within IAI46_06705at 1426.300 kb on - strand, within IAI46_06705at 1426.317 kb on - strand, within IAI46_06705

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,423,983 - IAI46_06685 0.39 +0.1
1,424,024 - IAI46_06685 0.46 +0.6
1,424,063 + IAI46_06685 0.51 +0.0
1,424,104 + IAI46_06685 0.58 +0.1
1,424,104 + IAI46_06685 0.58 +0.4
1,424,105 - IAI46_06685 0.58 +0.2
1,424,182 + IAI46_06685 0.70 +0.2
1,424,182 + IAI46_06685 0.70 +1.4
1,424,183 - IAI46_06685 0.70 +0.6
1,424,296 - IAI46_06685 0.87 +0.7
1,424,303 + IAI46_06685 0.88 +0.9
1,424,303 + IAI46_06685 0.88 -0.1
1,424,373 + +0.7
1,424,379 + -0.1
1,424,380 - +0.9
1,424,405 + +0.3
1,424,453 - IAI46_06690 0.13 -2.6
1,424,453 - IAI46_06690 0.13 -0.8
1,424,484 - IAI46_06690 0.20 -0.1
1,424,532 + IAI46_06690 0.29 -0.9
1,424,532 + IAI46_06690 0.29 -0.0
1,424,590 + IAI46_06690 0.41 -1.0
1,424,612 - IAI46_06690 0.45 +0.3
1,424,703 + IAI46_06690 0.63 -1.3
1,424,776 - IAI46_06690 0.78 +0.3
1,424,780 - IAI46_06690 0.79 +0.5
1,424,780 - IAI46_06690 0.79 +1.0
1,424,879 - +0.3
1,425,028 + IAI46_06695 0.27 +0.9
1,425,028 + IAI46_06695 0.27 -0.5
1,425,028 + IAI46_06695 0.27 +0.6
1,425,029 - IAI46_06695 0.27 +0.4
1,425,029 - IAI46_06695 0.27 -0.1
1,425,081 + IAI46_06695 0.38 -2.3
1,425,082 - IAI46_06695 0.38 -0.8
1,425,082 - IAI46_06695 0.38 -0.6
1,425,137 + IAI46_06695 0.49 -0.3
1,425,137 + IAI46_06695 0.49 +1.4
1,425,137 + IAI46_06695 0.49 +0.9
1,425,353 + -0.1
1,425,369 + -0.6
1,425,369 + +0.9
1,425,370 - +0.3
1,425,370 - -0.5
1,425,387 + -0.6
1,425,387 + +0.6
1,425,388 - +0.4
1,425,436 - +0.4
1,425,466 + IAI46_06700 0.14 -1.3
1,425,557 - IAI46_06700 0.31 +0.3
1,425,557 - IAI46_06700 0.31 +0.1
1,425,557 - IAI46_06700 0.31 +1.0
1,425,560 + IAI46_06700 0.32 +0.1
1,425,560 + IAI46_06700 0.32 +1.0
1,425,561 - IAI46_06700 0.32 +0.9
1,425,561 - IAI46_06700 0.32 +0.2
1,425,566 + IAI46_06700 0.33 -2.3
1,425,566 + IAI46_06700 0.33 -0.1
1,425,567 - IAI46_06700 0.33 -0.0
1,425,567 - IAI46_06700 0.33 -0.3
1,425,568 + IAI46_06700 0.33 +0.1
1,425,569 - IAI46_06700 0.34 +0.3
1,425,569 - IAI46_06700 0.34 +0.1
1,425,827 + IAI46_06700 0.82 -0.4
1,425,827 + IAI46_06700 0.82 +0.6
1,425,827 + IAI46_06700 0.82 +1.6
1,425,827 + IAI46_06700 0.82 -0.1
1,425,860 - IAI46_06700 0.89 +0.6
1,425,860 - IAI46_06700 0.89 +0.7
1,425,917 + -0.7
1,426,038 + IAI46_06705 0.22 +0.1
1,426,038 + IAI46_06705 0.22 +0.4
1,426,039 - IAI46_06705 0.22 +0.5
1,426,039 - IAI46_06705 0.22 +0.2
1,426,039 - IAI46_06705 0.22 +0.0
1,426,048 + IAI46_06705 0.23 -0.5
1,426,048 + IAI46_06705 0.23 +0.4
1,426,048 + IAI46_06705 0.23 +0.9
1,426,138 + IAI46_06705 0.39 +0.8
1,426,138 + IAI46_06705 0.39 +0.7
1,426,139 - IAI46_06705 0.39 +1.1
1,426,266 + IAI46_06705 0.61 +0.1
1,426,267 - IAI46_06705 0.61 +0.6
1,426,268 + IAI46_06705 0.61 +0.2
1,426,268 + IAI46_06705 0.61 +0.1
1,426,269 - IAI46_06705 0.61 -0.8
1,426,269 - IAI46_06705 0.61 +0.7
1,426,300 - IAI46_06705 0.67 -1.0
1,426,317 - IAI46_06705 0.70 +0.2

Or see this region's nucleotide sequence