Strain Fitness in Serratia liquefaciens MT49 around IAI46_06145

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06135 and IAI46_06140 are separated by 309 nucleotidesIAI46_06140 and IAI46_06145 are separated by 77 nucleotidesIAI46_06145 and IAI46_06150 are separated by 187 nucleotidesIAI46_06150 and IAI46_06155 overlap by 1 nucleotides IAI46_06135: IAI46_06135 - esterase, at 1,313,015 to 1,313,788 _06135 IAI46_06140: IAI46_06140 - replication initiation negative regulator SeqA, at 1,314,098 to 1,314,637 _06140 IAI46_06145: IAI46_06145 - alpha-D-glucose phosphate-specific phosphoglucomutase, at 1,314,715 to 1,316,358 _06145 IAI46_06150: IAI46_06150 - helix-turn-helix transcriptional regulator, at 1,316,546 to 1,317,208 _06150 IAI46_06155: IAI46_06155 - DUF3861 domain-containing protein, at 1,317,208 to 1,317,507 _06155 Position (kb) 1314 1315 1316 1317Strain fitness (log2 ratio) -1 0 1 2at 1313.764 kb on - strandat 1313.764 kb on - strandat 1313.769 kb on - strandat 1313.789 kb on - strandat 1313.813 kb on - strandat 1313.890 kb on - strandat 1313.903 kb on + strandat 1313.924 kb on + strandat 1313.924 kb on + strandat 1313.925 kb on - strandat 1313.963 kb on + strandat 1313.963 kb on + strandat 1313.964 kb on - strandat 1313.964 kb on - strandat 1313.967 kb on + strandat 1313.967 kb on + strandat 1313.967 kb on + strandat 1313.967 kb on + strandat 1313.967 kb on + strandat 1313.967 kb on + strandat 1313.967 kb on + strandat 1313.968 kb on - strandat 1313.968 kb on - strandat 1313.968 kb on - strandat 1313.970 kb on + strandat 1313.970 kb on + strandat 1313.970 kb on + strandat 1313.970 kb on + strandat 1314.002 kb on + strandat 1314.002 kb on + strandat 1314.002 kb on + strandat 1314.028 kb on + strandat 1314.028 kb on + strandat 1314.029 kb on - strandat 1314.030 kb on + strandat 1314.031 kb on - strandat 1314.069 kb on + strandat 1314.069 kb on + strandat 1314.073 kb on + strandat 1314.635 kb on + strandat 1314.636 kb on - strandat 1314.675 kb on + strandat 1314.676 kb on - strandat 1314.708 kb on + strandat 1314.708 kb on + strandat 1314.771 kb on - strandat 1314.790 kb on + strandat 1314.793 kb on + strandat 1314.793 kb on + strandat 1314.793 kb on + strandat 1314.793 kb on + strandat 1314.793 kb on + strandat 1314.793 kb on + strandat 1314.794 kb on - strandat 1314.794 kb on - strandat 1314.798 kb on - strandat 1314.958 kb on + strand, within IAI46_06145at 1314.958 kb on + strand, within IAI46_06145at 1314.958 kb on + strand, within IAI46_06145at 1314.958 kb on + strand, within IAI46_06145at 1315.056 kb on + strand, within IAI46_06145at 1315.183 kb on + strand, within IAI46_06145at 1315.186 kb on - strand, within IAI46_06145at 1315.346 kb on - strand, within IAI46_06145at 1315.375 kb on - strand, within IAI46_06145at 1315.465 kb on + strand, within IAI46_06145at 1315.466 kb on - strand, within IAI46_06145at 1315.519 kb on - strand, within IAI46_06145at 1315.634 kb on - strand, within IAI46_06145at 1315.649 kb on + strand, within IAI46_06145at 1315.653 kb on + strand, within IAI46_06145at 1315.653 kb on + strand, within IAI46_06145at 1315.653 kb on + strand, within IAI46_06145at 1315.654 kb on - strand, within IAI46_06145at 1315.654 kb on - strand, within IAI46_06145at 1315.684 kb on + strand, within IAI46_06145at 1315.684 kb on + strand, within IAI46_06145at 1315.706 kb on - strand, within IAI46_06145at 1315.742 kb on + strand, within IAI46_06145at 1316.048 kb on - strand, within IAI46_06145at 1316.258 kb on - strandat 1316.267 kb on - strandat 1316.321 kb on + strandat 1316.356 kb on + strandat 1316.356 kb on + strandat 1316.356 kb on + strandat 1316.356 kb on + strandat 1316.423 kb on - strandat 1316.455 kb on + strandat 1316.478 kb on + strandat 1316.478 kb on + strandat 1316.480 kb on + strandat 1316.497 kb on + strandat 1316.499 kb on + strandat 1316.503 kb on + strandat 1316.538 kb on + strandat 1316.545 kb on + strandat 1316.545 kb on + strandat 1316.546 kb on - strandat 1316.565 kb on + strandat 1316.819 kb on + strand, within IAI46_06150at 1316.819 kb on + strand, within IAI46_06150at 1316.819 kb on + strand, within IAI46_06150at 1317.187 kb on + strandat 1317.188 kb on - strandat 1317.188 kb on - strandat 1317.231 kb on + strandat 1317.313 kb on - strand, within IAI46_06155

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,313,764 - -1.0
1,313,764 - +0.4
1,313,769 - +0.9
1,313,789 - -0.7
1,313,813 - -1.6
1,313,890 - +0.5
1,313,903 + +0.5
1,313,924 + -0.1
1,313,924 + +0.3
1,313,925 - +0.2
1,313,963 + +0.8
1,313,963 + -0.1
1,313,964 - -0.7
1,313,964 - -0.5
1,313,967 + +0.4
1,313,967 + -0.1
1,313,967 + -0.4
1,313,967 + +0.3
1,313,967 + +0.2
1,313,967 + +1.1
1,313,967 + -0.2
1,313,968 - -0.1
1,313,968 - +0.0
1,313,968 - -0.0
1,313,970 + +0.6
1,313,970 + +2.0
1,313,970 + +0.3
1,313,970 + +0.2
1,314,002 + +0.1
1,314,002 + +1.2
1,314,002 + -0.2
1,314,028 + -0.1
1,314,028 + -0.3
1,314,029 - -0.3
1,314,030 + +0.4
1,314,031 - -0.3
1,314,069 + -0.5
1,314,069 + -0.5
1,314,073 + -0.2
1,314,635 + -0.3
1,314,636 - +0.4
1,314,675 + -1.3
1,314,676 - -0.5
1,314,708 + +0.6
1,314,708 + +0.3
1,314,771 - -0.8
1,314,790 + +0.5
1,314,793 + -1.1
1,314,793 + +1.3
1,314,793 + +1.0
1,314,793 + -0.2
1,314,793 + +0.8
1,314,793 + -1.2
1,314,794 - +0.7
1,314,794 - +0.4
1,314,798 - -0.1
1,314,958 + IAI46_06145 0.15 -0.2
1,314,958 + IAI46_06145 0.15 +0.1
1,314,958 + IAI46_06145 0.15 +0.2
1,314,958 + IAI46_06145 0.15 -1.5
1,315,056 + IAI46_06145 0.21 -0.5
1,315,183 + IAI46_06145 0.28 -0.6
1,315,186 - IAI46_06145 0.29 +0.4
1,315,346 - IAI46_06145 0.38 +0.4
1,315,375 - IAI46_06145 0.40 -1.0
1,315,465 + IAI46_06145 0.46 -1.2
1,315,466 - IAI46_06145 0.46 +0.4
1,315,519 - IAI46_06145 0.49 +0.7
1,315,634 - IAI46_06145 0.56 -1.0
1,315,649 + IAI46_06145 0.57 +0.7
1,315,653 + IAI46_06145 0.57 +0.0
1,315,653 + IAI46_06145 0.57 -1.5
1,315,653 + IAI46_06145 0.57 -0.3
1,315,654 - IAI46_06145 0.57 -0.8
1,315,654 - IAI46_06145 0.57 +0.4
1,315,684 + IAI46_06145 0.59 +0.5
1,315,684 + IAI46_06145 0.59 -0.1
1,315,706 - IAI46_06145 0.60 +0.6
1,315,742 + IAI46_06145 0.62 +1.2
1,316,048 - IAI46_06145 0.81 -0.3
1,316,258 - +0.4
1,316,267 - +0.2
1,316,321 + +0.4
1,316,356 + -0.6
1,316,356 + +0.2
1,316,356 + +0.5
1,316,356 + -0.5
1,316,423 - +0.5
1,316,455 + -0.3
1,316,478 + +0.2
1,316,478 + -0.2
1,316,480 + +0.2
1,316,497 + +0.0
1,316,499 + +1.1
1,316,503 + -0.4
1,316,538 + +1.5
1,316,545 + -0.4
1,316,545 + -0.5
1,316,546 - -0.3
1,316,565 + -0.4
1,316,819 + IAI46_06150 0.41 -0.6
1,316,819 + IAI46_06150 0.41 -0.9
1,316,819 + IAI46_06150 0.41 +1.3
1,317,187 + -0.8
1,317,188 - +0.4
1,317,188 - -0.2
1,317,231 + +0.1
1,317,313 - IAI46_06155 0.35 +0.6

Or see this region's nucleotide sequence