Strain Fitness in Serratia liquefaciens MT49 around IAI46_06070

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06065 and IAI46_06070 are separated by 404 nucleotidesIAI46_06070 and IAI46_06075 are separated by 178 nucleotidesIAI46_06075 and IAI46_06080 are separated by 67 nucleotides IAI46_06065: IAI46_06065 - asparagine synthase B, at 1,293,416 to 1,295,080 _06065 IAI46_06070: IAI46_06070 - chitinase, at 1,295,485 to 1,296,939 _06070 IAI46_06075: IAI46_06075 - HAD-IIA family hydrolase, at 1,297,118 to 1,297,870 _06075 IAI46_06080: IAI46_06080 - ROK family transcriptional regulator, at 1,297,938 to 1,299,158 _06080 Position (kb) 1295 1296 1297Strain fitness (log2 ratio) -1 0 1 2at 1294.506 kb on + strand, within IAI46_06065at 1294.507 kb on - strand, within IAI46_06065at 1294.507 kb on - strand, within IAI46_06065at 1294.510 kb on - strand, within IAI46_06065at 1294.510 kb on - strand, within IAI46_06065at 1294.542 kb on + strand, within IAI46_06065at 1294.542 kb on + strand, within IAI46_06065at 1294.543 kb on - strand, within IAI46_06065at 1294.543 kb on - strand, within IAI46_06065at 1294.543 kb on - strand, within IAI46_06065at 1294.611 kb on + strand, within IAI46_06065at 1294.611 kb on + strand, within IAI46_06065at 1294.612 kb on - strand, within IAI46_06065at 1294.612 kb on - strand, within IAI46_06065at 1294.612 kb on - strand, within IAI46_06065at 1294.641 kb on + strand, within IAI46_06065at 1294.641 kb on + strand, within IAI46_06065at 1294.641 kb on + strand, within IAI46_06065at 1294.642 kb on - strand, within IAI46_06065at 1294.642 kb on - strand, within IAI46_06065at 1294.642 kb on - strand, within IAI46_06065at 1294.702 kb on - strand, within IAI46_06065at 1294.845 kb on + strand, within IAI46_06065at 1294.846 kb on - strand, within IAI46_06065at 1294.846 kb on - strand, within IAI46_06065at 1294.891 kb on - strand, within IAI46_06065at 1294.891 kb on - strand, within IAI46_06065at 1294.891 kb on - strand, within IAI46_06065at 1294.891 kb on - strand, within IAI46_06065at 1295.071 kb on + strandat 1295.071 kb on + strandat 1295.072 kb on - strandat 1295.080 kb on + strandat 1295.081 kb on - strandat 1295.081 kb on - strandat 1295.081 kb on - strandat 1295.081 kb on - strandat 1295.081 kb on - strandat 1295.082 kb on + strandat 1295.083 kb on - strandat 1295.083 kb on - strandat 1295.118 kb on - strandat 1295.118 kb on - strandat 1295.164 kb on - strandat 1295.222 kb on - strandat 1295.236 kb on + strandat 1295.236 kb on + strandat 1295.236 kb on + strandat 1295.236 kb on + strandat 1295.237 kb on - strandat 1295.247 kb on - strandat 1295.248 kb on + strandat 1295.248 kb on + strandat 1295.248 kb on + strandat 1295.249 kb on - strandat 1295.358 kb on + strandat 1295.565 kb on - strandat 1295.577 kb on + strandat 1295.579 kb on + strandat 1295.579 kb on + strandat 1295.579 kb on + strandat 1295.579 kb on + strandat 1295.580 kb on - strandat 1295.580 kb on - strandat 1295.580 kb on - strandat 1295.580 kb on - strandat 1295.602 kb on - strandat 1295.603 kb on + strandat 1295.604 kb on - strandat 1295.668 kb on - strand, within IAI46_06070at 1295.668 kb on - strand, within IAI46_06070at 1295.697 kb on + strand, within IAI46_06070at 1295.697 kb on + strand, within IAI46_06070at 1295.697 kb on + strand, within IAI46_06070at 1295.729 kb on + strand, within IAI46_06070at 1295.729 kb on + strand, within IAI46_06070at 1295.730 kb on - strand, within IAI46_06070at 1295.818 kb on - strand, within IAI46_06070at 1295.982 kb on + strand, within IAI46_06070at 1295.982 kb on + strand, within IAI46_06070at 1296.000 kb on + strand, within IAI46_06070at 1296.001 kb on - strand, within IAI46_06070at 1296.084 kb on + strand, within IAI46_06070at 1296.086 kb on + strand, within IAI46_06070at 1296.087 kb on - strand, within IAI46_06070at 1296.087 kb on - strand, within IAI46_06070at 1296.111 kb on - strand, within IAI46_06070at 1296.111 kb on - strand, within IAI46_06070at 1296.143 kb on - strand, within IAI46_06070at 1296.216 kb on - strand, within IAI46_06070at 1296.216 kb on - strand, within IAI46_06070at 1296.216 kb on - strand, within IAI46_06070at 1296.216 kb on - strand, within IAI46_06070at 1296.219 kb on - strand, within IAI46_06070at 1296.219 kb on - strand, within IAI46_06070at 1296.298 kb on - strand, within IAI46_06070at 1296.315 kb on + strand, within IAI46_06070at 1296.316 kb on - strand, within IAI46_06070at 1296.316 kb on - strand, within IAI46_06070at 1296.317 kb on + strand, within IAI46_06070at 1296.317 kb on + strand, within IAI46_06070at 1296.318 kb on - strand, within IAI46_06070at 1296.320 kb on + strand, within IAI46_06070at 1296.320 kb on + strand, within IAI46_06070at 1296.341 kb on + strand, within IAI46_06070at 1296.341 kb on + strand, within IAI46_06070at 1296.364 kb on - strand, within IAI46_06070at 1296.364 kb on - strand, within IAI46_06070at 1296.366 kb on - strand, within IAI46_06070at 1296.374 kb on + strand, within IAI46_06070at 1296.375 kb on - strand, within IAI46_06070at 1296.447 kb on - strand, within IAI46_06070at 1296.489 kb on + strand, within IAI46_06070at 1296.708 kb on - strand, within IAI46_06070at 1296.708 kb on - strand, within IAI46_06070at 1296.762 kb on + strand, within IAI46_06070at 1296.762 kb on + strand, within IAI46_06070at 1296.762 kb on + strand, within IAI46_06070at 1296.763 kb on - strand, within IAI46_06070at 1296.765 kb on - strand, within IAI46_06070at 1296.765 kb on - strand, within IAI46_06070at 1296.870 kb on + strandat 1296.921 kb on + strandat 1296.921 kb on + strandat 1296.922 kb on - strandat 1296.922 kb on - strandat 1296.939 kb on + strandat 1296.942 kb on + strandat 1296.942 kb on + strandat 1296.992 kb on + strandat 1297.005 kb on + strandat 1297.006 kb on - strandat 1297.009 kb on + strandat 1297.010 kb on - strandat 1297.010 kb on - strandat 1297.013 kb on + strandat 1297.062 kb on + strandat 1297.126 kb on + strandat 1297.155 kb on + strandat 1297.155 kb on + strandat 1297.155 kb on + strandat 1297.155 kb on + strandat 1297.156 kb on - strandat 1297.258 kb on + strand, within IAI46_06075at 1297.353 kb on + strand, within IAI46_06075at 1297.354 kb on - strand, within IAI46_06075at 1297.476 kb on + strand, within IAI46_06075at 1297.506 kb on + strand, within IAI46_06075at 1297.507 kb on - strand, within IAI46_06075at 1297.507 kb on - strand, within IAI46_06075at 1297.572 kb on + strand, within IAI46_06075at 1297.665 kb on + strand, within IAI46_06075at 1297.850 kb on + strandat 1297.850 kb on + strandat 1297.850 kb on + strandat 1297.850 kb on + strandat 1297.851 kb on - strandat 1297.851 kb on - strandat 1297.851 kb on - strandat 1297.851 kb on - strandat 1297.853 kb on - strandat 1297.853 kb on - strandat 1297.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,294,506 + IAI46_06065 0.65 -0.3
1,294,507 - IAI46_06065 0.66 +0.4
1,294,507 - IAI46_06065 0.66 +0.3
1,294,510 - IAI46_06065 0.66 +1.0
1,294,510 - IAI46_06065 0.66 -0.8
1,294,542 + IAI46_06065 0.68 -0.1
1,294,542 + IAI46_06065 0.68 +1.4
1,294,543 - IAI46_06065 0.68 -0.9
1,294,543 - IAI46_06065 0.68 -0.3
1,294,543 - IAI46_06065 0.68 -0.1
1,294,611 + IAI46_06065 0.72 +0.1
1,294,611 + IAI46_06065 0.72 +1.1
1,294,612 - IAI46_06065 0.72 -0.1
1,294,612 - IAI46_06065 0.72 -1.0
1,294,612 - IAI46_06065 0.72 -1.6
1,294,641 + IAI46_06065 0.74 +0.3
1,294,641 + IAI46_06065 0.74 +0.4
1,294,641 + IAI46_06065 0.74 +0.0
1,294,642 - IAI46_06065 0.74 -0.1
1,294,642 - IAI46_06065 0.74 -0.3
1,294,642 - IAI46_06065 0.74 -0.8
1,294,702 - IAI46_06065 0.77 -0.1
1,294,845 + IAI46_06065 0.86 -0.1
1,294,846 - IAI46_06065 0.86 -0.5
1,294,846 - IAI46_06065 0.86 +0.6
1,294,891 - IAI46_06065 0.89 +0.6
1,294,891 - IAI46_06065 0.89 -0.3
1,294,891 - IAI46_06065 0.89 +0.3
1,294,891 - IAI46_06065 0.89 -0.9
1,295,071 + +0.4
1,295,071 + +1.3
1,295,072 - -0.7
1,295,080 + +0.5
1,295,081 - +0.2
1,295,081 - +0.4
1,295,081 - +0.4
1,295,081 - +0.6
1,295,081 - -0.2
1,295,082 + -0.6
1,295,083 - -0.1
1,295,083 - -0.7
1,295,118 - +0.4
1,295,118 - +0.1
1,295,164 - -0.3
1,295,222 - +0.2
1,295,236 + +0.9
1,295,236 + -0.7
1,295,236 + -0.3
1,295,236 + +0.0
1,295,237 - +0.4
1,295,247 - +0.4
1,295,248 + -0.4
1,295,248 + -0.0
1,295,248 + +0.4
1,295,249 - -0.5
1,295,358 + +0.7
1,295,565 - -0.3
1,295,577 + +0.4
1,295,579 + +1.4
1,295,579 + +0.2
1,295,579 + +1.8
1,295,579 + -0.4
1,295,580 - -0.3
1,295,580 - +0.4
1,295,580 - -0.6
1,295,580 - +1.2
1,295,602 - -1.0
1,295,603 + +0.4
1,295,604 - -0.1
1,295,668 - IAI46_06070 0.13 +0.4
1,295,668 - IAI46_06070 0.13 -0.2
1,295,697 + IAI46_06070 0.15 -1.7
1,295,697 + IAI46_06070 0.15 +0.5
1,295,697 + IAI46_06070 0.15 +0.1
1,295,729 + IAI46_06070 0.17 -0.2
1,295,729 + IAI46_06070 0.17 +0.4
1,295,730 - IAI46_06070 0.17 +0.7
1,295,818 - IAI46_06070 0.23 -0.4
1,295,982 + IAI46_06070 0.34 +0.9
1,295,982 + IAI46_06070 0.34 -0.3
1,296,000 + IAI46_06070 0.35 +0.6
1,296,001 - IAI46_06070 0.35 -0.3
1,296,084 + IAI46_06070 0.41 +0.5
1,296,086 + IAI46_06070 0.41 -0.9
1,296,087 - IAI46_06070 0.41 -0.3
1,296,087 - IAI46_06070 0.41 +0.3
1,296,111 - IAI46_06070 0.43 +0.8
1,296,111 - IAI46_06070 0.43 +1.0
1,296,143 - IAI46_06070 0.45 +1.8
1,296,216 - IAI46_06070 0.50 +0.3
1,296,216 - IAI46_06070 0.50 +1.8
1,296,216 - IAI46_06070 0.50 +0.3
1,296,216 - IAI46_06070 0.50 -0.1
1,296,219 - IAI46_06070 0.50 +1.2
1,296,219 - IAI46_06070 0.50 -0.3
1,296,298 - IAI46_06070 0.56 -0.2
1,296,315 + IAI46_06070 0.57 +0.6
1,296,316 - IAI46_06070 0.57 -1.2
1,296,316 - IAI46_06070 0.57 +0.2
1,296,317 + IAI46_06070 0.57 -0.4
1,296,317 + IAI46_06070 0.57 +0.5
1,296,318 - IAI46_06070 0.57 -0.5
1,296,320 + IAI46_06070 0.57 +0.9
1,296,320 + IAI46_06070 0.57 -0.3
1,296,341 + IAI46_06070 0.59 -0.2
1,296,341 + IAI46_06070 0.59 +0.0
1,296,364 - IAI46_06070 0.60 -0.2
1,296,364 - IAI46_06070 0.60 +0.9
1,296,366 - IAI46_06070 0.61 -0.1
1,296,374 + IAI46_06070 0.61 +0.2
1,296,375 - IAI46_06070 0.61 +0.4
1,296,447 - IAI46_06070 0.66 -0.1
1,296,489 + IAI46_06070 0.69 -0.3
1,296,708 - IAI46_06070 0.84 +0.6
1,296,708 - IAI46_06070 0.84 -0.6
1,296,762 + IAI46_06070 0.88 +0.1
1,296,762 + IAI46_06070 0.88 +1.3
1,296,762 + IAI46_06070 0.88 +0.1
1,296,763 - IAI46_06070 0.88 +0.0
1,296,765 - IAI46_06070 0.88 +0.0
1,296,765 - IAI46_06070 0.88 +0.8
1,296,870 + -0.5
1,296,921 + +0.4
1,296,921 + +0.3
1,296,922 - +0.4
1,296,922 - -0.3
1,296,939 + -0.4
1,296,942 + -0.7
1,296,942 + +0.8
1,296,992 + +0.8
1,297,005 + -0.1
1,297,006 - -0.1
1,297,009 + -0.4
1,297,010 - +0.6
1,297,010 - +0.5
1,297,013 + +0.6
1,297,062 + +0.9
1,297,126 + +0.5
1,297,155 + +0.8
1,297,155 + -0.9
1,297,155 + -0.3
1,297,155 + +0.0
1,297,156 - +1.8
1,297,258 + IAI46_06075 0.19 +0.2
1,297,353 + IAI46_06075 0.31 -0.5
1,297,354 - IAI46_06075 0.31 +0.1
1,297,476 + IAI46_06075 0.48 -1.7
1,297,506 + IAI46_06075 0.52 +0.5
1,297,507 - IAI46_06075 0.52 -0.5
1,297,507 - IAI46_06075 0.52 -0.4
1,297,572 + IAI46_06075 0.60 +0.7
1,297,665 + IAI46_06075 0.73 +0.1
1,297,850 + -1.2
1,297,850 + +0.5
1,297,850 + +0.1
1,297,850 + -0.3
1,297,851 - +0.5
1,297,851 - -0.1
1,297,851 - -0.4
1,297,851 - +0.5
1,297,853 - +0.1
1,297,853 - -1.1
1,297,914 - +0.6

Or see this region's nucleotide sequence