Strain Fitness in Serratia liquefaciens MT49 around IAI46_05730

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05725 and IAI46_05730 are separated by 41 nucleotidesIAI46_05730 and IAI46_05735 are separated by 92 nucleotides IAI46_05725: IAI46_05725 - SDR family NAD(P)-dependent oxidoreductase, at 1,232,233 to 1,233,096 _05725 IAI46_05730: IAI46_05730 - zinc-dependent alcohol dehydrogenase family protein, at 1,233,138 to 1,234,127 _05730 IAI46_05735: IAI46_05735 - NADP-dependent oxidoreductase, at 1,234,220 to 1,235,155 _05735 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -2 -1 0 1 2at 1232.191 kb on + strandat 1232.212 kb on + strandat 1232.265 kb on + strandat 1232.303 kb on - strandat 1232.303 kb on - strandat 1232.323 kb on + strand, within IAI46_05725at 1232.324 kb on - strand, within IAI46_05725at 1232.347 kb on - strand, within IAI46_05725at 1232.350 kb on - strand, within IAI46_05725at 1232.351 kb on + strand, within IAI46_05725at 1232.377 kb on + strand, within IAI46_05725at 1232.402 kb on - strand, within IAI46_05725at 1232.415 kb on + strand, within IAI46_05725at 1232.419 kb on + strand, within IAI46_05725at 1232.565 kb on + strand, within IAI46_05725at 1232.604 kb on + strand, within IAI46_05725at 1232.627 kb on + strand, within IAI46_05725at 1232.631 kb on - strand, within IAI46_05725at 1232.631 kb on - strand, within IAI46_05725at 1232.660 kb on + strand, within IAI46_05725at 1232.661 kb on - strand, within IAI46_05725at 1232.668 kb on + strand, within IAI46_05725at 1232.744 kb on - strand, within IAI46_05725at 1232.758 kb on + strand, within IAI46_05725at 1232.759 kb on - strand, within IAI46_05725at 1232.760 kb on + strand, within IAI46_05725at 1232.841 kb on + strand, within IAI46_05725at 1232.850 kb on - strand, within IAI46_05725at 1232.850 kb on - strand, within IAI46_05725at 1232.850 kb on - strand, within IAI46_05725at 1232.875 kb on - strand, within IAI46_05725at 1232.878 kb on + strand, within IAI46_05725at 1232.887 kb on + strand, within IAI46_05725at 1232.888 kb on - strand, within IAI46_05725at 1232.991 kb on + strand, within IAI46_05725at 1232.996 kb on + strand, within IAI46_05725at 1232.997 kb on - strand, within IAI46_05725at 1233.040 kb on - strandat 1233.043 kb on + strandat 1233.066 kb on + strandat 1233.066 kb on + strandat 1233.097 kb on + strandat 1233.097 kb on + strandat 1233.184 kb on + strandat 1233.185 kb on - strandat 1233.201 kb on + strandat 1233.202 kb on - strandat 1233.202 kb on - strandat 1233.229 kb on - strandat 1233.319 kb on + strand, within IAI46_05730at 1233.405 kb on + strand, within IAI46_05730at 1233.406 kb on - strand, within IAI46_05730at 1233.438 kb on + strand, within IAI46_05730at 1233.476 kb on + strand, within IAI46_05730at 1233.477 kb on - strand, within IAI46_05730at 1233.519 kb on + strand, within IAI46_05730at 1233.519 kb on + strand, within IAI46_05730at 1233.570 kb on + strand, within IAI46_05730at 1233.660 kb on - strand, within IAI46_05730at 1233.685 kb on + strand, within IAI46_05730at 1233.685 kb on + strand, within IAI46_05730at 1233.685 kb on + strand, within IAI46_05730at 1233.685 kb on + strand, within IAI46_05730at 1233.685 kb on + strand, within IAI46_05730at 1233.727 kb on + strand, within IAI46_05730at 1233.739 kb on + strand, within IAI46_05730at 1233.739 kb on + strand, within IAI46_05730at 1233.740 kb on - strand, within IAI46_05730at 1233.812 kb on - strand, within IAI46_05730at 1233.829 kb on + strand, within IAI46_05730at 1233.830 kb on - strand, within IAI46_05730at 1233.864 kb on - strand, within IAI46_05730at 1233.938 kb on - strand, within IAI46_05730at 1233.938 kb on - strand, within IAI46_05730at 1233.938 kb on - strand, within IAI46_05730at 1233.978 kb on - strand, within IAI46_05730at 1233.978 kb on - strand, within IAI46_05730at 1234.028 kb on + strand, within IAI46_05730at 1234.028 kb on + strand, within IAI46_05730at 1234.029 kb on - strandat 1234.029 kb on - strandat 1234.031 kb on + strandat 1234.031 kb on + strandat 1234.083 kb on + strandat 1234.140 kb on + strandat 1234.140 kb on + strandat 1234.141 kb on - strandat 1234.143 kb on - strandat 1234.153 kb on + strandat 1234.169 kb on + strandat 1234.208 kb on - strandat 1234.232 kb on + strandat 1234.233 kb on - strandat 1234.233 kb on - strandat 1234.289 kb on - strandat 1234.289 kb on - strandat 1234.295 kb on + strandat 1234.299 kb on + strandat 1234.568 kb on - strand, within IAI46_05735at 1234.605 kb on + strand, within IAI46_05735at 1234.605 kb on + strand, within IAI46_05735at 1234.605 kb on + strand, within IAI46_05735at 1234.606 kb on - strand, within IAI46_05735at 1234.606 kb on - strand, within IAI46_05735at 1234.727 kb on + strand, within IAI46_05735at 1234.986 kb on - strand, within IAI46_05735at 1234.988 kb on - strand, within IAI46_05735at 1234.993 kb on + strand, within IAI46_05735at 1234.994 kb on - strand, within IAI46_05735at 1234.994 kb on - strand, within IAI46_05735at 1235.021 kb on + strand, within IAI46_05735at 1235.121 kb on + strandat 1235.121 kb on + strandat 1235.122 kb on - strandat 1235.122 kb on - strandat 1235.122 kb on - strandat 1235.125 kb on + strandat 1235.126 kb on - strandat 1235.127 kb on + strandat 1235.127 kb on + strandat 1235.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,232,191 + -0.5
1,232,212 + +0.5
1,232,265 + -0.1
1,232,303 - -1.1
1,232,303 - -1.0
1,232,323 + IAI46_05725 0.10 +0.8
1,232,324 - IAI46_05725 0.11 +0.6
1,232,347 - IAI46_05725 0.13 +0.9
1,232,350 - IAI46_05725 0.14 -0.4
1,232,351 + IAI46_05725 0.14 +1.0
1,232,377 + IAI46_05725 0.17 +0.2
1,232,402 - IAI46_05725 0.20 -0.8
1,232,415 + IAI46_05725 0.21 -0.8
1,232,419 + IAI46_05725 0.22 +1.2
1,232,565 + IAI46_05725 0.38 -0.4
1,232,604 + IAI46_05725 0.43 +0.4
1,232,627 + IAI46_05725 0.46 +0.5
1,232,631 - IAI46_05725 0.46 +0.6
1,232,631 - IAI46_05725 0.46 +0.3
1,232,660 + IAI46_05725 0.49 +0.8
1,232,661 - IAI46_05725 0.50 -0.0
1,232,668 + IAI46_05725 0.50 +0.3
1,232,744 - IAI46_05725 0.59 +0.3
1,232,758 + IAI46_05725 0.61 +0.9
1,232,759 - IAI46_05725 0.61 -0.4
1,232,760 + IAI46_05725 0.61 -0.3
1,232,841 + IAI46_05725 0.70 -0.4
1,232,850 - IAI46_05725 0.71 +2.3
1,232,850 - IAI46_05725 0.71 -0.4
1,232,850 - IAI46_05725 0.71 -1.2
1,232,875 - IAI46_05725 0.74 +0.1
1,232,878 + IAI46_05725 0.75 +0.1
1,232,887 + IAI46_05725 0.76 -0.0
1,232,888 - IAI46_05725 0.76 -0.5
1,232,991 + IAI46_05725 0.88 +1.5
1,232,996 + IAI46_05725 0.88 -0.4
1,232,997 - IAI46_05725 0.88 +0.3
1,233,040 - -0.1
1,233,043 + -1.3
1,233,066 + -0.5
1,233,066 + +0.2
1,233,097 + -0.8
1,233,097 + +0.8
1,233,184 + +0.4
1,233,185 - +0.1
1,233,201 + +0.3
1,233,202 - +1.2
1,233,202 - +0.2
1,233,229 - -0.1
1,233,319 + IAI46_05730 0.18 +0.6
1,233,405 + IAI46_05730 0.27 +1.0
1,233,406 - IAI46_05730 0.27 +0.1
1,233,438 + IAI46_05730 0.30 +0.0
1,233,476 + IAI46_05730 0.34 +0.3
1,233,477 - IAI46_05730 0.34 -1.8
1,233,519 + IAI46_05730 0.38 +0.3
1,233,519 + IAI46_05730 0.38 -1.0
1,233,570 + IAI46_05730 0.44 +0.5
1,233,660 - IAI46_05730 0.53 +0.7
1,233,685 + IAI46_05730 0.55 +0.0
1,233,685 + IAI46_05730 0.55 -0.7
1,233,685 + IAI46_05730 0.55 +0.4
1,233,685 + IAI46_05730 0.55 +0.2
1,233,685 + IAI46_05730 0.55 -0.1
1,233,727 + IAI46_05730 0.59 +0.6
1,233,739 + IAI46_05730 0.61 +0.0
1,233,739 + IAI46_05730 0.61 -0.0
1,233,740 - IAI46_05730 0.61 -1.2
1,233,812 - IAI46_05730 0.68 -0.9
1,233,829 + IAI46_05730 0.70 -1.7
1,233,830 - IAI46_05730 0.70 -0.8
1,233,864 - IAI46_05730 0.73 +0.9
1,233,938 - IAI46_05730 0.81 +0.1
1,233,938 - IAI46_05730 0.81 +0.4
1,233,938 - IAI46_05730 0.81 -0.9
1,233,978 - IAI46_05730 0.85 +0.7
1,233,978 - IAI46_05730 0.85 +0.5
1,234,028 + IAI46_05730 0.90 +1.2
1,234,028 + IAI46_05730 0.90 -0.1
1,234,029 - +0.5
1,234,029 - +0.0
1,234,031 + -0.5
1,234,031 + -0.2
1,234,083 + +0.3
1,234,140 + +0.6
1,234,140 + +0.4
1,234,141 - +0.3
1,234,143 - +0.8
1,234,153 + -1.6
1,234,169 + -0.0
1,234,208 - +0.6
1,234,232 + +0.7
1,234,233 - -0.6
1,234,233 - -0.2
1,234,289 - +0.5
1,234,289 - +0.1
1,234,295 + +0.8
1,234,299 + +1.1
1,234,568 - IAI46_05735 0.37 +0.5
1,234,605 + IAI46_05735 0.41 +0.7
1,234,605 + IAI46_05735 0.41 -0.0
1,234,605 + IAI46_05735 0.41 +0.6
1,234,606 - IAI46_05735 0.41 -0.3
1,234,606 - IAI46_05735 0.41 +0.5
1,234,727 + IAI46_05735 0.54 +1.5
1,234,986 - IAI46_05735 0.82 -0.1
1,234,988 - IAI46_05735 0.82 +1.4
1,234,993 + IAI46_05735 0.83 -0.6
1,234,994 - IAI46_05735 0.83 -0.2
1,234,994 - IAI46_05735 0.83 +0.7
1,235,021 + IAI46_05735 0.86 +0.5
1,235,121 + -0.6
1,235,121 + +0.1
1,235,122 - +0.2
1,235,122 - +0.1
1,235,122 - -0.5
1,235,125 + +0.3
1,235,126 - +0.1
1,235,127 + -0.3
1,235,127 + +0.9
1,235,127 + +0.3

Or see this region's nucleotide sequence