Strain Fitness in Serratia liquefaciens MT49 around IAI46_05530

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05525 and IAI46_05530 are separated by 209 nucleotidesIAI46_05530 and IAI46_05535 overlap by 4 nucleotides IAI46_05525: IAI46_05525 - hypothetical protein, at 1,189,704 to 1,190,327 _05525 IAI46_05530: IAI46_05530 - type VI secretion system contractile sheath small subunit, at 1,190,537 to 1,191,025 _05530 IAI46_05535: IAI46_05535 - type VI secretion system contractile sheath large subunit, at 1,191,022 to 1,192,503 _05535 Position (kb) 1190 1191 1192Strain fitness (log2 ratio) -1 0 1at 1189.602 kb on + strandat 1189.602 kb on + strandat 1189.617 kb on - strandat 1189.627 kb on + strandat 1189.627 kb on + strandat 1189.718 kb on + strandat 1189.807 kb on - strand, within IAI46_05525at 1189.970 kb on - strand, within IAI46_05525at 1189.970 kb on - strand, within IAI46_05525at 1190.036 kb on - strand, within IAI46_05525at 1190.192 kb on + strand, within IAI46_05525at 1190.229 kb on - strand, within IAI46_05525at 1190.270 kb on - strandat 1190.468 kb on - strandat 1190.601 kb on + strand, within IAI46_05530at 1190.601 kb on + strand, within IAI46_05530at 1190.709 kb on + strand, within IAI46_05530at 1190.709 kb on + strand, within IAI46_05530at 1190.735 kb on - strand, within IAI46_05530at 1190.892 kb on + strand, within IAI46_05530at 1190.892 kb on + strand, within IAI46_05530at 1191.138 kb on - strandat 1191.211 kb on - strand, within IAI46_05535at 1191.215 kb on + strand, within IAI46_05535at 1191.225 kb on + strand, within IAI46_05535at 1191.321 kb on + strand, within IAI46_05535at 1191.434 kb on + strand, within IAI46_05535at 1191.434 kb on + strand, within IAI46_05535at 1191.438 kb on + strand, within IAI46_05535at 1191.448 kb on + strand, within IAI46_05535at 1191.466 kb on - strand, within IAI46_05535at 1191.543 kb on - strand, within IAI46_05535at 1191.658 kb on - strand, within IAI46_05535at 1191.662 kb on + strand, within IAI46_05535at 1191.662 kb on + strand, within IAI46_05535at 1191.822 kb on + strand, within IAI46_05535at 1191.822 kb on + strand, within IAI46_05535at 1191.838 kb on + strand, within IAI46_05535at 1191.838 kb on + strand, within IAI46_05535at 1191.839 kb on - strand, within IAI46_05535at 1191.839 kb on - strand, within IAI46_05535at 1191.926 kb on + strand, within IAI46_05535at 1191.926 kb on + strand, within IAI46_05535at 1191.927 kb on - strand, within IAI46_05535at 1191.927 kb on - strand, within IAI46_05535at 1191.944 kb on + strand, within IAI46_05535at 1191.961 kb on + strand, within IAI46_05535at 1191.962 kb on - strand, within IAI46_05535at 1191.962 kb on - strand, within IAI46_05535at 1191.963 kb on + strand, within IAI46_05535at 1191.964 kb on - strand, within IAI46_05535at 1191.964 kb on - strand, within IAI46_05535at 1191.967 kb on + strand, within IAI46_05535at 1191.968 kb on - strand, within IAI46_05535at 1191.969 kb on + strand, within IAI46_05535at 1191.969 kb on + strand, within IAI46_05535

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,189,602 + +0.6
1,189,602 + +0.4
1,189,617 - +0.5
1,189,627 + +1.6
1,189,627 + -0.0
1,189,718 + -1.1
1,189,807 - IAI46_05525 0.17 +1.2
1,189,970 - IAI46_05525 0.43 +0.7
1,189,970 - IAI46_05525 0.43 -0.3
1,190,036 - IAI46_05525 0.53 +0.3
1,190,192 + IAI46_05525 0.78 -0.6
1,190,229 - IAI46_05525 0.84 +1.1
1,190,270 - +0.7
1,190,468 - +0.3
1,190,601 + IAI46_05530 0.13 +0.2
1,190,601 + IAI46_05530 0.13 +0.0
1,190,709 + IAI46_05530 0.35 -1.2
1,190,709 + IAI46_05530 0.35 -0.2
1,190,735 - IAI46_05530 0.40 -0.1
1,190,892 + IAI46_05530 0.73 +0.2
1,190,892 + IAI46_05530 0.73 +0.4
1,191,138 - -0.9
1,191,211 - IAI46_05535 0.13 +0.9
1,191,215 + IAI46_05535 0.13 -1.3
1,191,225 + IAI46_05535 0.14 -0.7
1,191,321 + IAI46_05535 0.20 -0.2
1,191,434 + IAI46_05535 0.28 +0.5
1,191,434 + IAI46_05535 0.28 +0.7
1,191,438 + IAI46_05535 0.28 +1.2
1,191,448 + IAI46_05535 0.29 -0.4
1,191,466 - IAI46_05535 0.30 +0.1
1,191,543 - IAI46_05535 0.35 +0.3
1,191,658 - IAI46_05535 0.43 -0.1
1,191,662 + IAI46_05535 0.43 +0.3
1,191,662 + IAI46_05535 0.43 +0.9
1,191,822 + IAI46_05535 0.54 -1.7
1,191,822 + IAI46_05535 0.54 +0.7
1,191,838 + IAI46_05535 0.55 +0.2
1,191,838 + IAI46_05535 0.55 +0.4
1,191,839 - IAI46_05535 0.55 +0.3
1,191,839 - IAI46_05535 0.55 -0.3
1,191,926 + IAI46_05535 0.61 +0.3
1,191,926 + IAI46_05535 0.61 -1.4
1,191,927 - IAI46_05535 0.61 -0.2
1,191,927 - IAI46_05535 0.61 -0.7
1,191,944 + IAI46_05535 0.62 +0.9
1,191,961 + IAI46_05535 0.63 +1.5
1,191,962 - IAI46_05535 0.63 -0.2
1,191,962 - IAI46_05535 0.63 -0.5
1,191,963 + IAI46_05535 0.63 -0.5
1,191,964 - IAI46_05535 0.64 -0.3
1,191,964 - IAI46_05535 0.64 -0.2
1,191,967 + IAI46_05535 0.64 +0.5
1,191,968 - IAI46_05535 0.64 +1.2
1,191,969 + IAI46_05535 0.64 +0.3
1,191,969 + IAI46_05535 0.64 +0.6

Or see this region's nucleotide sequence