Strain Fitness in Serratia liquefaciens MT49 around IAI46_04230

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04210 and IAI46_04215 are separated by 9 nucleotidesIAI46_04215 and IAI46_04220 overlap by 40 nucleotidesIAI46_04220 and IAI46_04225 are separated by 89 nucleotidesIAI46_04225 and IAI46_04230 are separated by 3 nucleotidesIAI46_04230 and IAI46_04235 overlap by 4 nucleotidesIAI46_04235 and IAI46_04240 are separated by 27 nucleotides IAI46_04210: IAI46_04210 - siderophore-interacting protein, at 908,077 to 908,961 _04210 IAI46_04215: IAI46_04215 - type II toxin-antitoxin system RelE/ParE family toxin, at 908,971 to 909,210 _04215 IAI46_04220: IAI46_04220 - ribbon-helix-helix protein, CopG family, at 909,171 to 909,323 _04220 IAI46_04225: IAI46_04225 - oxalurate catabolism protein HpxZ, at 909,413 to 909,796 _04225 IAI46_04230: IAI46_04230 - AtzE family amidohydrolase, at 909,800 to 911,200 _04230 IAI46_04235: IAI46_04235 - oxalurate catabolism protein HpxX, at 911,197 to 911,388 _04235 IAI46_04240: IAI46_04240 - gamma-glutamyltransferase, at 911,416 to 913,002 _04240 Position (kb) 909 910 911 912Strain fitness (log2 ratio) -2 -1 0 1 2at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.899 kb on + strandat 908.950 kb on + strandat 908.951 kb on - strandat 908.951 kb on - strandat 908.951 kb on - strandat 909.035 kb on + strand, within IAI46_04215at 909.045 kb on + strand, within IAI46_04215at 909.045 kb on + strand, within IAI46_04215at 909.097 kb on - strand, within IAI46_04215at 909.150 kb on + strand, within IAI46_04215at 909.151 kb on - strand, within IAI46_04215at 909.209 kb on - strandat 909.231 kb on - strand, within IAI46_04220at 909.231 kb on - strand, within IAI46_04220at 909.284 kb on + strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.323 kb on + strandat 909.323 kb on + strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.338 kb on - strandat 909.338 kb on - strandat 909.342 kb on - strandat 909.347 kb on + strandat 909.351 kb on - strandat 909.351 kb on - strandat 909.351 kb on - strandat 909.363 kb on + strandat 909.363 kb on + strandat 909.364 kb on - strandat 909.364 kb on - strandat 909.364 kb on - strandat 909.366 kb on - strandat 909.366 kb on - strandat 909.366 kb on - strandat 909.538 kb on + strand, within IAI46_04225at 909.539 kb on - strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.782 kb on - strandat 909.783 kb on + strandat 909.783 kb on + strandat 909.784 kb on - strandat 909.784 kb on - strandat 909.784 kb on - strandat 909.801 kb on + strandat 909.802 kb on - strandat 909.856 kb on - strandat 909.994 kb on + strand, within IAI46_04230at 910.027 kb on + strand, within IAI46_04230at 910.027 kb on + strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.028 kb on - strand, within IAI46_04230at 910.132 kb on + strand, within IAI46_04230at 910.155 kb on + strand, within IAI46_04230at 910.155 kb on + strand, within IAI46_04230at 910.155 kb on + strand, within IAI46_04230at 910.155 kb on + strand, within IAI46_04230at 910.156 kb on - strand, within IAI46_04230at 910.246 kb on - strand, within IAI46_04230at 910.355 kb on + strand, within IAI46_04230at 910.355 kb on + strand, within IAI46_04230at 910.367 kb on - strand, within IAI46_04230at 910.515 kb on + strand, within IAI46_04230at 910.515 kb on + strand, within IAI46_04230at 910.516 kb on - strand, within IAI46_04230at 910.659 kb on - strand, within IAI46_04230at 910.748 kb on - strand, within IAI46_04230at 910.809 kb on + strand, within IAI46_04230at 910.810 kb on - strand, within IAI46_04230at 910.816 kb on - strand, within IAI46_04230at 910.825 kb on + strand, within IAI46_04230at 911.068 kb on + strandat 911.069 kb on - strandat 911.070 kb on + strandat 911.070 kb on + strandat 911.071 kb on - strandat 911.071 kb on - strandat 911.071 kb on - strandat 911.101 kb on + strandat 911.102 kb on - strandat 911.108 kb on + strandat 911.108 kb on + strandat 911.208 kb on - strandat 911.208 kb on - strandat 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.353 kb on - strand, within IAI46_04235at 911.353 kb on - strand, within IAI46_04235at 911.354 kb on + strand, within IAI46_04235at 911.354 kb on + strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.475 kb on + strandat 911.517 kb on + strandat 911.562 kb on - strandat 911.562 kb on - strandat 911.744 kb on + strand, within IAI46_04240at 911.745 kb on - strand, within IAI46_04240at 911.745 kb on - strand, within IAI46_04240at 911.765 kb on + strand, within IAI46_04240at 911.765 kb on + strand, within IAI46_04240at 911.918 kb on + strand, within IAI46_04240at 911.919 kb on - strand, within IAI46_04240at 912.031 kb on - strand, within IAI46_04240

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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908,851 + IAI46_04210 0.87 +0.1
908,851 + IAI46_04210 0.87 +1.2
908,851 + IAI46_04210 0.87 -0.7
908,851 + IAI46_04210 0.87 -1.1
908,851 + IAI46_04210 0.87 +0.9
908,899 + +0.6
908,950 + +0.2
908,951 - +0.0
908,951 - -0.1
908,951 - -0.2
909,035 + IAI46_04215 0.27 +0.5
909,045 + IAI46_04215 0.31 +1.1
909,045 + IAI46_04215 0.31 +0.5
909,097 - IAI46_04215 0.53 +1.4
909,150 + IAI46_04215 0.75 -0.7
909,151 - IAI46_04215 0.75 -0.9
909,209 - +0.4
909,231 - IAI46_04220 0.39 +0.4
909,231 - IAI46_04220 0.39 +1.1
909,284 + IAI46_04220 0.74 -0.4
909,285 - IAI46_04220 0.75 -0.3
909,285 - IAI46_04220 0.75 +0.6
909,285 - IAI46_04220 0.75 +0.3
909,285 - IAI46_04220 0.75 -0.1
909,323 + -0.0
909,323 + +1.6
909,324 - +1.0
909,324 - -0.2
909,324 - +0.2
909,324 - +0.8
909,324 - +0.6
909,338 - +0.3
909,338 - +1.3
909,342 - +0.7
909,347 + +0.3
909,351 - -0.1
909,351 - -0.3
909,351 - -0.7
909,363 + -1.6
909,363 + -0.0
909,364 - +0.3
909,364 - +1.4
909,364 - +1.3
909,366 - +0.8
909,366 - +0.1
909,366 - +0.4
909,538 + IAI46_04225 0.33 -0.4
909,539 - IAI46_04225 0.33 +0.3
909,549 + IAI46_04225 0.35 +1.4
909,549 + IAI46_04225 0.35 -0.1
909,549 + IAI46_04225 0.35 -0.5
909,549 + IAI46_04225 0.35 +0.6
909,549 + IAI46_04225 0.35 +1.8
909,550 - IAI46_04225 0.36 +0.6
909,550 - IAI46_04225 0.36 +0.4
909,550 - IAI46_04225 0.36 -0.4
909,706 + IAI46_04225 0.76 +0.6
909,706 + IAI46_04225 0.76 +0.8
909,706 + IAI46_04225 0.76 +0.7
909,706 + IAI46_04225 0.76 +0.2
909,782 - +0.5
909,783 + -2.1
909,783 + -0.0
909,784 - +0.7
909,784 - +0.2
909,784 - +0.0
909,801 + -0.5
909,802 - +0.7
909,856 - -0.8
909,994 + IAI46_04230 0.14 -0.6
910,027 + IAI46_04230 0.16 +0.3
910,027 + IAI46_04230 0.16 -0.7
910,028 - IAI46_04230 0.16 +0.2
910,028 - IAI46_04230 0.16 +0.7
910,028 - IAI46_04230 0.16 -0.6
910,028 - IAI46_04230 0.16 +0.4
910,028 - IAI46_04230 0.16 -0.3
910,132 + IAI46_04230 0.24 -0.5
910,155 + IAI46_04230 0.25 -0.6
910,155 + IAI46_04230 0.25 +0.0
910,155 + IAI46_04230 0.25 +0.0
910,155 + IAI46_04230 0.25 +0.3
910,156 - IAI46_04230 0.25 +0.4
910,246 - IAI46_04230 0.32 -0.2
910,355 + IAI46_04230 0.40 -0.5
910,355 + IAI46_04230 0.40 +0.4
910,367 - IAI46_04230 0.40 -0.2
910,515 + IAI46_04230 0.51 +0.6
910,515 + IAI46_04230 0.51 -1.8
910,516 - IAI46_04230 0.51 +1.0
910,659 - IAI46_04230 0.61 +0.5
910,748 - IAI46_04230 0.68 -0.4
910,809 + IAI46_04230 0.72 +0.4
910,810 - IAI46_04230 0.72 -0.3
910,816 - IAI46_04230 0.73 -0.1
910,825 + IAI46_04230 0.73 +1.0
911,068 + +1.0
911,069 - +0.0
911,070 + +0.3
911,070 + +0.2
911,071 - +0.4
911,071 - +0.3
911,071 - +0.1
911,101 + -1.4
911,102 - +0.3
911,108 + +0.4
911,108 + -0.6
911,208 - -0.1
911,208 - -0.7
911,352 + IAI46_04235 0.81 -0.3
911,352 + IAI46_04235 0.81 -0.4
911,352 + IAI46_04235 0.81 +0.4
911,352 + IAI46_04235 0.81 -0.0
911,353 - IAI46_04235 0.81 -0.2
911,353 - IAI46_04235 0.81 +1.5
911,354 + IAI46_04235 0.82 -0.3
911,354 + IAI46_04235 0.82 +0.2
911,355 - IAI46_04235 0.82 +0.8
911,355 - IAI46_04235 0.82 +0.8
911,355 - IAI46_04235 0.82 +0.4
911,475 + -1.8
911,517 + -0.0
911,562 - +0.7
911,562 - -0.2
911,744 + IAI46_04240 0.21 -0.9
911,745 - IAI46_04240 0.21 -0.8
911,745 - IAI46_04240 0.21 +0.6
911,765 + IAI46_04240 0.22 +1.3
911,765 + IAI46_04240 0.22 -0.2
911,918 + IAI46_04240 0.32 -0.6
911,919 - IAI46_04240 0.32 +0.3
912,031 - IAI46_04240 0.39 -0.6

Or see this region's nucleotide sequence