Strain Fitness in Serratia liquefaciens MT49 around IAI46_04110

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04105 and IAI46_04110 are separated by 141 nucleotidesIAI46_04110 and IAI46_04115 are separated by 46 nucleotides IAI46_04105: IAI46_04105 - beta-ketoacyl-ACP synthase, at 884,518 to 885,747 _04105 IAI46_04110: IAI46_04110 - 2,5-didehydrogluconate reductase DkgB, at 885,889 to 886,692 _04110 IAI46_04115: IAI46_04115 - LysR family transcriptional regulator, at 886,739 to 887,626 _04115 Position (kb) 885 886 887Strain fitness (log2 ratio) -2 -1 0 1at 884.907 kb on + strand, within IAI46_04105at 884.910 kb on + strand, within IAI46_04105at 884.910 kb on + strand, within IAI46_04105at 884.923 kb on + strand, within IAI46_04105at 884.923 kb on + strand, within IAI46_04105at 884.923 kb on + strand, within IAI46_04105at 884.924 kb on - strand, within IAI46_04105at 884.924 kb on - strand, within IAI46_04105at 884.924 kb on - strand, within IAI46_04105at 884.924 kb on - strand, within IAI46_04105at 885.043 kb on + strand, within IAI46_04105at 885.043 kb on + strand, within IAI46_04105at 885.043 kb on + strand, within IAI46_04105at 885.044 kb on - strand, within IAI46_04105at 885.044 kb on - strand, within IAI46_04105at 885.044 kb on - strand, within IAI46_04105at 885.207 kb on - strand, within IAI46_04105at 885.228 kb on + strand, within IAI46_04105at 885.228 kb on + strand, within IAI46_04105at 885.228 kb on + strand, within IAI46_04105at 885.228 kb on + strand, within IAI46_04105at 885.229 kb on - strand, within IAI46_04105at 885.280 kb on + strand, within IAI46_04105at 885.281 kb on - strand, within IAI46_04105at 885.324 kb on + strand, within IAI46_04105at 885.324 kb on + strand, within IAI46_04105at 885.324 kb on + strand, within IAI46_04105at 885.324 kb on + strand, within IAI46_04105at 885.325 kb on - strand, within IAI46_04105at 885.410 kb on - strand, within IAI46_04105at 885.410 kb on - strand, within IAI46_04105at 885.412 kb on - strand, within IAI46_04105at 885.412 kb on - strand, within IAI46_04105at 885.659 kb on - strandat 885.693 kb on + strandat 885.717 kb on + strandat 885.717 kb on + strandat 885.718 kb on - strandat 885.718 kb on - strandat 885.718 kb on - strandat 885.718 kb on - strandat 885.745 kb on + strandat 885.791 kb on - strandat 885.844 kb on + strandat 885.871 kb on + strandat 885.888 kb on + strandat 885.889 kb on - strandat 885.911 kb on + strandat 885.957 kb on + strandat 885.958 kb on - strandat 886.069 kb on - strand, within IAI46_04110at 886.069 kb on - strand, within IAI46_04110at 886.157 kb on - strand, within IAI46_04110at 886.248 kb on - strand, within IAI46_04110at 886.361 kb on - strand, within IAI46_04110at 886.420 kb on + strand, within IAI46_04110at 886.421 kb on - strand, within IAI46_04110at 886.506 kb on + strand, within IAI46_04110at 886.810 kb on - strandat 886.812 kb on + strandat 886.900 kb on + strand, within IAI46_04115at 886.901 kb on - strand, within IAI46_04115at 887.047 kb on + strand, within IAI46_04115at 887.047 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.155 kb on + strand, within IAI46_04115at 887.155 kb on + strand, within IAI46_04115at 887.156 kb on - strand, within IAI46_04115at 887.156 kb on - strand, within IAI46_04115at 887.213 kb on - strand, within IAI46_04115at 887.230 kb on + strand, within IAI46_04115at 887.230 kb on + strand, within IAI46_04115at 887.231 kb on - strand, within IAI46_04115at 887.272 kb on - strand, within IAI46_04115at 887.306 kb on + strand, within IAI46_04115at 887.306 kb on + strand, within IAI46_04115at 887.307 kb on - strand, within IAI46_04115at 887.307 kb on - strand, within IAI46_04115at 887.409 kb on - strand, within IAI46_04115at 887.409 kb on - strand, within IAI46_04115at 887.599 kb on + strandat 887.677 kb on + strandat 887.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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884,907 + IAI46_04105 0.32 +0.7
884,910 + IAI46_04105 0.32 +0.3
884,910 + IAI46_04105 0.32 +0.0
884,923 + IAI46_04105 0.33 +0.7
884,923 + IAI46_04105 0.33 +0.2
884,923 + IAI46_04105 0.33 +0.7
884,924 - IAI46_04105 0.33 -0.2
884,924 - IAI46_04105 0.33 -0.4
884,924 - IAI46_04105 0.33 -1.2
884,924 - IAI46_04105 0.33 -1.3
885,043 + IAI46_04105 0.43 -0.0
885,043 + IAI46_04105 0.43 -0.7
885,043 + IAI46_04105 0.43 -1.9
885,044 - IAI46_04105 0.43 -0.4
885,044 - IAI46_04105 0.43 -0.1
885,044 - IAI46_04105 0.43 +0.2
885,207 - IAI46_04105 0.56 +0.0
885,228 + IAI46_04105 0.58 -0.2
885,228 + IAI46_04105 0.58 +0.2
885,228 + IAI46_04105 0.58 -0.1
885,228 + IAI46_04105 0.58 +0.2
885,229 - IAI46_04105 0.58 +0.2
885,280 + IAI46_04105 0.62 +1.3
885,281 - IAI46_04105 0.62 +0.9
885,324 + IAI46_04105 0.66 +0.5
885,324 + IAI46_04105 0.66 -0.1
885,324 + IAI46_04105 0.66 +1.4
885,324 + IAI46_04105 0.66 -0.5
885,325 - IAI46_04105 0.66 +0.6
885,410 - IAI46_04105 0.73 +0.4
885,410 - IAI46_04105 0.73 +0.3
885,412 - IAI46_04105 0.73 -0.1
885,412 - IAI46_04105 0.73 +1.0
885,659 - +0.3
885,693 + -0.7
885,717 + -0.5
885,717 + +0.8
885,718 - +0.2
885,718 - -0.2
885,718 - -0.6
885,718 - +1.4
885,745 + -0.7
885,791 - +0.9
885,844 + +0.9
885,871 + +0.1
885,888 + -0.7
885,889 - +0.6
885,911 + +0.0
885,957 + +1.2
885,958 - +0.7
886,069 - IAI46_04110 0.22 +0.3
886,069 - IAI46_04110 0.22 -0.2
886,157 - IAI46_04110 0.33 +0.4
886,248 - IAI46_04110 0.45 +0.2
886,361 - IAI46_04110 0.59 +1.4
886,420 + IAI46_04110 0.66 -0.5
886,421 - IAI46_04110 0.66 +0.4
886,506 + IAI46_04110 0.77 -0.6
886,810 - +0.4
886,812 + +0.4
886,900 + IAI46_04115 0.18 +0.8
886,901 - IAI46_04115 0.18 -0.6
887,047 + IAI46_04115 0.35 -0.2
887,047 + IAI46_04115 0.35 -0.8
887,100 + IAI46_04115 0.41 +0.2
887,100 + IAI46_04115 0.41 -0.4
887,100 + IAI46_04115 0.41 -0.1
887,112 + IAI46_04115 0.42 +0.1
887,112 + IAI46_04115 0.42 +0.5
887,112 + IAI46_04115 0.42 -0.9
887,112 + IAI46_04115 0.42 -0.0
887,113 - IAI46_04115 0.42 -1.5
887,113 - IAI46_04115 0.42 +0.6
887,113 - IAI46_04115 0.42 +0.4
887,155 + IAI46_04115 0.47 -0.3
887,155 + IAI46_04115 0.47 -0.8
887,156 - IAI46_04115 0.47 +0.3
887,156 - IAI46_04115 0.47 +0.2
887,213 - IAI46_04115 0.53 -0.8
887,230 + IAI46_04115 0.55 -1.2
887,230 + IAI46_04115 0.55 +0.5
887,231 - IAI46_04115 0.55 +0.0
887,272 - IAI46_04115 0.60 -0.5
887,306 + IAI46_04115 0.64 -0.2
887,306 + IAI46_04115 0.64 +0.6
887,307 - IAI46_04115 0.64 +0.6
887,307 - IAI46_04115 0.64 -1.1
887,409 - IAI46_04115 0.75 +0.4
887,409 - IAI46_04115 0.75 +0.6
887,599 + +0.9
887,677 + +1.4
887,678 - +1.4

Or see this region's nucleotide sequence