Strain Fitness in Serratia liquefaciens MT49 around IAI46_02750

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02740 and IAI46_02745 are separated by 51 nucleotidesIAI46_02745 and IAI46_02750 are separated by 10 nucleotidesIAI46_02750 and IAI46_02755 are separated by 34 nucleotidesIAI46_02755 and IAI46_02760 are separated by 30 nucleotides IAI46_02740: IAI46_02740 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 590,448 to 591,521 _02740 IAI46_02745: IAI46_02745 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 591,573 to 591,959 _02745 IAI46_02750: IAI46_02750 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 591,970 to 592,773 _02750 IAI46_02755: IAI46_02755 - 4-hydroxy-2-oxoheptanedioate aldolase, at 592,808 to 593,614 _02755 IAI46_02760: IAI46_02760 - 4-hydroxyphenylacetate permease, at 593,645 to 594,967 _02760 Position (kb) 591 592 593Strain fitness (log2 ratio) -1 0 1 2at 591.089 kb on + strand, within IAI46_02740at 591.089 kb on + strand, within IAI46_02740at 591.089 kb on + strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.210 kb on + strand, within IAI46_02740at 591.210 kb on + strand, within IAI46_02740at 591.211 kb on - strand, within IAI46_02740at 591.211 kb on - strand, within IAI46_02740at 591.216 kb on + strand, within IAI46_02740at 591.244 kb on + strand, within IAI46_02740at 591.244 kb on + strand, within IAI46_02740at 591.252 kb on + strand, within IAI46_02740at 591.252 kb on + strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.267 kb on + strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740at 591.412 kb on + strand, within IAI46_02740at 591.500 kb on + strandat 591.572 kb on + strandat 591.572 kb on + strandat 591.572 kb on + strandat 591.572 kb on + strandat 591.573 kb on - strandat 591.716 kb on + strand, within IAI46_02745at 591.738 kb on - strand, within IAI46_02745at 591.761 kb on + strand, within IAI46_02745at 591.761 kb on + strand, within IAI46_02745at 591.761 kb on + strand, within IAI46_02745at 591.762 kb on - strand, within IAI46_02745at 591.871 kb on - strand, within IAI46_02745at 591.918 kb on + strand, within IAI46_02745at 591.919 kb on - strand, within IAI46_02745at 591.978 kb on + strandat 591.991 kb on - strandat 592.087 kb on + strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.088 kb on - strand, within IAI46_02750at 592.110 kb on - strand, within IAI46_02750at 592.150 kb on - strand, within IAI46_02750at 592.269 kb on + strand, within IAI46_02750at 592.269 kb on + strand, within IAI46_02750at 592.351 kb on + strand, within IAI46_02750at 592.351 kb on + strand, within IAI46_02750at 592.352 kb on - strand, within IAI46_02750at 592.352 kb on - strand, within IAI46_02750at 592.354 kb on - strand, within IAI46_02750at 592.367 kb on - strand, within IAI46_02750at 592.367 kb on - strand, within IAI46_02750at 592.407 kb on + strand, within IAI46_02750at 592.649 kb on + strand, within IAI46_02750at 592.650 kb on - strand, within IAI46_02750at 592.650 kb on - strand, within IAI46_02750at 592.898 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.971 kb on + strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 592.972 kb on - strand, within IAI46_02755at 593.091 kb on + strand, within IAI46_02755at 593.091 kb on + strand, within IAI46_02755at 593.167 kb on - strand, within IAI46_02755at 593.253 kb on + strand, within IAI46_02755at 593.253 kb on + strand, within IAI46_02755at 593.254 kb on - strand, within IAI46_02755at 593.328 kb on + strand, within IAI46_02755at 593.329 kb on - strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.332 kb on + strand, within IAI46_02755at 593.416 kb on + strand, within IAI46_02755at 593.416 kb on + strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.417 kb on - strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.486 kb on + strand, within IAI46_02755at 593.487 kb on - strand, within IAI46_02755at 593.518 kb on - strand, within IAI46_02755at 593.573 kb on - strandat 593.592 kb on + strandat 593.592 kb on + strandat 593.612 kb on + strandat 593.612 kb on + strandat 593.612 kb on + strandat 593.613 kb on - strandat 593.632 kb on + strandat 593.692 kb on + strandat 593.693 kb on - strandat 593.693 kb on - strandat 593.749 kb on + strandat 593.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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591,089 + IAI46_02740 0.60 +0.6
591,089 + IAI46_02740 0.60 +1.4
591,089 + IAI46_02740 0.60 -0.0
591,090 - IAI46_02740 0.60 +0.2
591,090 - IAI46_02740 0.60 -0.1
591,090 - IAI46_02740 0.60 +0.0
591,090 - IAI46_02740 0.60 -0.2
591,210 + IAI46_02740 0.71 +0.7
591,210 + IAI46_02740 0.71 +0.1
591,211 - IAI46_02740 0.71 +0.1
591,211 - IAI46_02740 0.71 -0.6
591,216 + IAI46_02740 0.72 +0.3
591,244 + IAI46_02740 0.74 -0.5
591,244 + IAI46_02740 0.74 +1.0
591,252 + IAI46_02740 0.75 -0.0
591,252 + IAI46_02740 0.75 -0.4
591,253 - IAI46_02740 0.75 -0.6
591,253 - IAI46_02740 0.75 +0.5
591,253 - IAI46_02740 0.75 +0.5
591,264 + IAI46_02740 0.76 +0.8
591,264 + IAI46_02740 0.76 -0.9
591,264 + IAI46_02740 0.76 -0.8
591,265 - IAI46_02740 0.76 +2.2
591,265 - IAI46_02740 0.76 +0.2
591,265 - IAI46_02740 0.76 -0.3
591,267 + IAI46_02740 0.76 -0.0
591,268 - IAI46_02740 0.76 -0.4
591,268 - IAI46_02740 0.76 +0.1
591,268 - IAI46_02740 0.76 +0.5
591,412 + IAI46_02740 0.90 -0.0
591,500 + +0.0
591,572 + -0.6
591,572 + +1.2
591,572 + +0.9
591,572 + +0.5
591,573 - -1.3
591,716 + IAI46_02745 0.37 -0.1
591,738 - IAI46_02745 0.43 +0.2
591,761 + IAI46_02745 0.49 +0.5
591,761 + IAI46_02745 0.49 -1.2
591,761 + IAI46_02745 0.49 +0.4
591,762 - IAI46_02745 0.49 +0.1
591,871 - IAI46_02745 0.77 +0.2
591,918 + IAI46_02745 0.89 -0.7
591,919 - IAI46_02745 0.89 +0.3
591,978 + -0.6
591,991 - +0.6
592,087 + IAI46_02750 0.15 +1.4
592,088 - IAI46_02750 0.15 +0.3
592,088 - IAI46_02750 0.15 +0.0
592,088 - IAI46_02750 0.15 +0.5
592,110 - IAI46_02750 0.17 +0.8
592,150 - IAI46_02750 0.22 +0.4
592,269 + IAI46_02750 0.37 -0.7
592,269 + IAI46_02750 0.37 -0.7
592,351 + IAI46_02750 0.47 +0.3
592,351 + IAI46_02750 0.47 -0.8
592,352 - IAI46_02750 0.48 -0.1
592,352 - IAI46_02750 0.48 +0.2
592,354 - IAI46_02750 0.48 -0.1
592,367 - IAI46_02750 0.49 +0.5
592,367 - IAI46_02750 0.49 -0.8
592,407 + IAI46_02750 0.54 +0.4
592,649 + IAI46_02750 0.84 +0.0
592,650 - IAI46_02750 0.85 +0.3
592,650 - IAI46_02750 0.85 +0.4
592,898 + IAI46_02755 0.11 +0.3
592,971 + IAI46_02755 0.20 +1.0
592,971 + IAI46_02755 0.20 +0.0
592,971 + IAI46_02755 0.20 -0.5
592,972 - IAI46_02755 0.20 +1.0
592,972 - IAI46_02755 0.20 +0.2
592,972 - IAI46_02755 0.20 -0.6
593,091 + IAI46_02755 0.35 -0.4
593,091 + IAI46_02755 0.35 -0.1
593,167 - IAI46_02755 0.44 -0.1
593,253 + IAI46_02755 0.55 -0.6
593,253 + IAI46_02755 0.55 -0.4
593,254 - IAI46_02755 0.55 +0.0
593,328 + IAI46_02755 0.64 +0.2
593,329 - IAI46_02755 0.65 +0.5
593,332 + IAI46_02755 0.65 +0.4
593,332 + IAI46_02755 0.65 +0.1
593,332 + IAI46_02755 0.65 +0.6
593,416 + IAI46_02755 0.75 -0.6
593,416 + IAI46_02755 0.75 +0.7
593,417 - IAI46_02755 0.75 +0.2
593,417 - IAI46_02755 0.75 +0.6
593,417 - IAI46_02755 0.75 +0.6
593,486 + IAI46_02755 0.84 +0.4
593,486 + IAI46_02755 0.84 +0.3
593,486 + IAI46_02755 0.84 -0.8
593,487 - IAI46_02755 0.84 -0.5
593,518 - IAI46_02755 0.88 +0.6
593,573 - -1.2
593,592 + -0.9
593,592 + -0.3
593,612 + +0.4
593,612 + +0.5
593,612 + +0.1
593,613 - +0.5
593,632 + +0.7
593,692 + -1.0
593,693 - -0.0
593,693 - -0.3
593,749 + +0.9
593,750 - +0.2

Or see this region's nucleotide sequence