Strain Fitness in Serratia liquefaciens MT49 around IAI46_01615

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01610 and IAI46_01615 are separated by 26 nucleotidesIAI46_01615 and IAI46_01620 overlap by 8 nucleotides IAI46_01610: IAI46_01610 - N-acetylmuramoyl-L-alanine amidase AmiB, at 351,969 to 353,765 _01610 IAI46_01615: IAI46_01615 - DNA mismatch repair endonuclease MutL, at 353,792 to 355,666 _01615 IAI46_01620: IAI46_01620 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 355,659 to 356,600 _01620 Position (kb) 353 354 355 356Strain fitness (log2 ratio) -2 -1 0 1 2at 353.001 kb on + strand, within IAI46_01610at 353.001 kb on + strand, within IAI46_01610at 353.002 kb on - strand, within IAI46_01610at 353.056 kb on - strand, within IAI46_01610at 353.069 kb on - strand, within IAI46_01610at 353.069 kb on - strand, within IAI46_01610at 353.109 kb on - strand, within IAI46_01610at 353.109 kb on - strand, within IAI46_01610at 353.187 kb on - strand, within IAI46_01610at 353.187 kb on - strand, within IAI46_01610at 353.187 kb on - strand, within IAI46_01610at 353.192 kb on + strand, within IAI46_01610at 353.195 kb on + strand, within IAI46_01610at 353.195 kb on + strand, within IAI46_01610at 353.196 kb on - strand, within IAI46_01610at 353.196 kb on - strand, within IAI46_01610at 353.196 kb on - strand, within IAI46_01610at 353.293 kb on + strand, within IAI46_01610at 353.418 kb on - strand, within IAI46_01610at 353.418 kb on - strand, within IAI46_01610at 353.418 kb on - strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.475 kb on + strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.476 kb on - strand, within IAI46_01610at 353.549 kb on + strand, within IAI46_01610at 353.550 kb on - strand, within IAI46_01610at 353.586 kb on - strandat 353.586 kb on - strandat 353.648 kb on + strandat 353.648 kb on + strandat 353.649 kb on - strandat 353.773 kb on - strandat 353.775 kb on + strandat 353.775 kb on + strandat 353.776 kb on - strandat 353.776 kb on - strandat 353.776 kb on - strandat 353.776 kb on - strandat 353.779 kb on + strandat 353.779 kb on + strandat 353.779 kb on + strandat 353.780 kb on - strandat 353.780 kb on - strandat 353.780 kb on - strandat 353.780 kb on - strandat 353.808 kb on + strandat 353.809 kb on - strandat 353.921 kb on - strandat 353.921 kb on - strandat 354.025 kb on + strand, within IAI46_01615at 354.025 kb on + strand, within IAI46_01615at 354.214 kb on - strand, within IAI46_01615at 354.246 kb on - strand, within IAI46_01615at 354.246 kb on - strand, within IAI46_01615at 354.246 kb on - strand, within IAI46_01615at 354.312 kb on + strand, within IAI46_01615at 354.312 kb on + strand, within IAI46_01615at 354.312 kb on + strand, within IAI46_01615at 354.313 kb on - strand, within IAI46_01615at 354.313 kb on - strand, within IAI46_01615at 354.414 kb on - strand, within IAI46_01615at 354.414 kb on - strand, within IAI46_01615at 354.414 kb on - strand, within IAI46_01615at 354.551 kb on + strand, within IAI46_01615at 354.551 kb on + strand, within IAI46_01615at 354.552 kb on - strand, within IAI46_01615at 354.552 kb on - strand, within IAI46_01615at 354.552 kb on - strand, within IAI46_01615at 354.552 kb on - strand, within IAI46_01615at 354.557 kb on + strand, within IAI46_01615at 354.557 kb on + strand, within IAI46_01615at 354.557 kb on + strand, within IAI46_01615at 354.558 kb on - strand, within IAI46_01615at 354.558 kb on - strand, within IAI46_01615at 354.558 kb on - strand, within IAI46_01615at 354.614 kb on + strand, within IAI46_01615at 354.615 kb on - strand, within IAI46_01615at 354.650 kb on + strand, within IAI46_01615at 354.651 kb on - strand, within IAI46_01615at 354.651 kb on - strand, within IAI46_01615at 354.654 kb on + strand, within IAI46_01615at 354.654 kb on + strand, within IAI46_01615at 354.654 kb on + strand, within IAI46_01615at 354.655 kb on - strand, within IAI46_01615at 354.655 kb on - strand, within IAI46_01615at 354.659 kb on + strand, within IAI46_01615at 354.659 kb on + strand, within IAI46_01615at 354.685 kb on - strand, within IAI46_01615at 354.742 kb on - strand, within IAI46_01615at 354.751 kb on + strand, within IAI46_01615at 354.751 kb on + strand, within IAI46_01615at 354.752 kb on - strand, within IAI46_01615at 354.752 kb on - strand, within IAI46_01615at 354.755 kb on + strand, within IAI46_01615at 354.769 kb on + strand, within IAI46_01615at 354.770 kb on - strand, within IAI46_01615at 354.959 kb on + strand, within IAI46_01615at 355.078 kb on - strand, within IAI46_01615at 355.235 kb on - strand, within IAI46_01615at 355.395 kb on + strand, within IAI46_01615at 355.396 kb on - strand, within IAI46_01615at 355.401 kb on + strand, within IAI46_01615at 355.401 kb on + strand, within IAI46_01615at 355.401 kb on + strand, within IAI46_01615at 355.401 kb on + strand, within IAI46_01615at 355.446 kb on + strand, within IAI46_01615at 355.447 kb on - strand, within IAI46_01615at 355.447 kb on - strand, within IAI46_01615at 355.447 kb on - strand, within IAI46_01615at 355.451 kb on + strand, within IAI46_01615at 355.489 kb on - strandat 355.512 kb on + strandat 355.512 kb on + strandat 355.551 kb on + strandat 355.633 kb on - strandat 355.990 kb on - strand, within IAI46_01620at 356.015 kb on - strand, within IAI46_01620at 356.427 kb on + strand, within IAI46_01620at 356.427 kb on + strand, within IAI46_01620at 356.427 kb on + strand, within IAI46_01620at 356.427 kb on + strand, within IAI46_01620at 356.428 kb on - strand, within IAI46_01620at 356.431 kb on + strand, within IAI46_01620at 356.431 kb on + strand, within IAI46_01620at 356.464 kb on - strand, within IAI46_01620at 356.472 kb on - strand, within IAI46_01620at 356.533 kb on + strandat 356.581 kb on + strandat 356.591 kb on + strandat 356.592 kb on - strandat 356.598 kb on + strandat 356.598 kb on + strandat 356.599 kb on - strandat 356.599 kb on - strandat 356.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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353,001 + IAI46_01610 0.57 +0.9
353,001 + IAI46_01610 0.57 -0.7
353,002 - IAI46_01610 0.57 +0.0
353,056 - IAI46_01610 0.60 -1.3
353,069 - IAI46_01610 0.61 -0.3
353,069 - IAI46_01610 0.61 -1.5
353,109 - IAI46_01610 0.63 +0.0
353,109 - IAI46_01610 0.63 +0.0
353,187 - IAI46_01610 0.68 -0.4
353,187 - IAI46_01610 0.68 -1.0
353,187 - IAI46_01610 0.68 -0.5
353,192 + IAI46_01610 0.68 +0.0
353,195 + IAI46_01610 0.68 -0.5
353,195 + IAI46_01610 0.68 -1.3
353,196 - IAI46_01610 0.68 +1.4
353,196 - IAI46_01610 0.68 +0.4
353,196 - IAI46_01610 0.68 -0.4
353,293 + IAI46_01610 0.74 -0.5
353,418 - IAI46_01610 0.81 -0.1
353,418 - IAI46_01610 0.81 -1.1
353,418 - IAI46_01610 0.81 -0.4
353,475 + IAI46_01610 0.84 +0.0
353,475 + IAI46_01610 0.84 -0.5
353,475 + IAI46_01610 0.84 +0.5
353,475 + IAI46_01610 0.84 -0.0
353,475 + IAI46_01610 0.84 +0.0
353,476 - IAI46_01610 0.84 +0.3
353,476 - IAI46_01610 0.84 +0.1
353,476 - IAI46_01610 0.84 +0.1
353,476 - IAI46_01610 0.84 +0.5
353,476 - IAI46_01610 0.84 +0.1
353,476 - IAI46_01610 0.84 +0.1
353,476 - IAI46_01610 0.84 +0.2
353,476 - IAI46_01610 0.84 +0.6
353,549 + IAI46_01610 0.88 +0.5
353,550 - IAI46_01610 0.88 -0.3
353,586 - +1.8
353,586 - -0.0
353,648 + -1.2
353,648 + +0.2
353,649 - +0.7
353,773 - +0.5
353,775 + -0.4
353,775 + -0.0
353,776 - -0.1
353,776 - -0.3
353,776 - +0.4
353,776 - +0.8
353,779 + +1.7
353,779 + +0.2
353,779 + -1.7
353,780 - -0.8
353,780 - -0.4
353,780 - +0.9
353,780 - +0.2
353,808 + -0.5
353,809 - +0.2
353,921 - -1.1
353,921 - -0.6
354,025 + IAI46_01615 0.12 -0.2
354,025 + IAI46_01615 0.12 +0.0
354,214 - IAI46_01615 0.23 +1.2
354,246 - IAI46_01615 0.24 +0.2
354,246 - IAI46_01615 0.24 -2.6
354,246 - IAI46_01615 0.24 -0.0
354,312 + IAI46_01615 0.28 -0.8
354,312 + IAI46_01615 0.28 -0.1
354,312 + IAI46_01615 0.28 +1.3
354,313 - IAI46_01615 0.28 +0.5
354,313 - IAI46_01615 0.28 +0.4
354,414 - IAI46_01615 0.33 +0.5
354,414 - IAI46_01615 0.33 +0.9
354,414 - IAI46_01615 0.33 +0.1
354,551 + IAI46_01615 0.40 -0.6
354,551 + IAI46_01615 0.40 -0.1
354,552 - IAI46_01615 0.41 +0.1
354,552 - IAI46_01615 0.41 +0.4
354,552 - IAI46_01615 0.41 -0.1
354,552 - IAI46_01615 0.41 -0.1
354,557 + IAI46_01615 0.41 +0.8
354,557 + IAI46_01615 0.41 +1.4
354,557 + IAI46_01615 0.41 -0.0
354,558 - IAI46_01615 0.41 +1.2
354,558 - IAI46_01615 0.41 +0.3
354,558 - IAI46_01615 0.41 -1.3
354,614 + IAI46_01615 0.44 -0.6
354,615 - IAI46_01615 0.44 +0.0
354,650 + IAI46_01615 0.46 +0.3
354,651 - IAI46_01615 0.46 -0.4
354,651 - IAI46_01615 0.46 +0.1
354,654 + IAI46_01615 0.46 -0.4
354,654 + IAI46_01615 0.46 -0.4
354,654 + IAI46_01615 0.46 +0.1
354,655 - IAI46_01615 0.46 +0.1
354,655 - IAI46_01615 0.46 +0.6
354,659 + IAI46_01615 0.46 -0.6
354,659 + IAI46_01615 0.46 -0.4
354,685 - IAI46_01615 0.48 +0.9
354,742 - IAI46_01615 0.51 -0.2
354,751 + IAI46_01615 0.51 +0.0
354,751 + IAI46_01615 0.51 -0.1
354,752 - IAI46_01615 0.51 +0.6
354,752 - IAI46_01615 0.51 -0.1
354,755 + IAI46_01615 0.51 -1.3
354,769 + IAI46_01615 0.52 +0.6
354,770 - IAI46_01615 0.52 +0.4
354,959 + IAI46_01615 0.62 +0.1
355,078 - IAI46_01615 0.69 +0.9
355,235 - IAI46_01615 0.77 +0.9
355,395 + IAI46_01615 0.85 +0.1
355,396 - IAI46_01615 0.86 +0.2
355,401 + IAI46_01615 0.86 -0.0
355,401 + IAI46_01615 0.86 +0.6
355,401 + IAI46_01615 0.86 -0.3
355,401 + IAI46_01615 0.86 +0.4
355,446 + IAI46_01615 0.88 +0.8
355,447 - IAI46_01615 0.88 -0.8
355,447 - IAI46_01615 0.88 +0.2
355,447 - IAI46_01615 0.88 -0.3
355,451 + IAI46_01615 0.88 -0.3
355,489 - +0.3
355,512 + +0.1
355,512 + -0.1
355,551 + +0.6
355,633 - -0.4
355,990 - IAI46_01620 0.35 -0.2
356,015 - IAI46_01620 0.38 +0.3
356,427 + IAI46_01620 0.82 -1.6
356,427 + IAI46_01620 0.82 -0.1
356,427 + IAI46_01620 0.82 +0.6
356,427 + IAI46_01620 0.82 -0.1
356,428 - IAI46_01620 0.82 -0.4
356,431 + IAI46_01620 0.82 -0.5
356,431 + IAI46_01620 0.82 +0.3
356,464 - IAI46_01620 0.85 -0.6
356,472 - IAI46_01620 0.86 +0.3
356,533 + -0.2
356,581 + -0.5
356,591 + -0.3
356,592 - +0.6
356,598 + +0.1
356,598 + +0.0
356,599 - +0.0
356,599 - +1.2
356,599 - +0.0

Or see this region's nucleotide sequence