Strain Fitness in Serratia liquefaciens MT49 around IAI46_01135

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01130 and IAI46_01135 are separated by 233 nucleotidesIAI46_01135 and IAI46_01140 are separated by 117 nucleotides IAI46_01130: IAI46_01130 - fatty acid oxidation complex subunit alpha FadB, at 249,889 to 252,078 _01130 IAI46_01135: IAI46_01135 - MFS transporter, at 252,312 to 253,508 _01135 IAI46_01140: IAI46_01140 - Xaa-Pro dipeptidase, at 253,626 to 254,957 _01140 Position (kb) 252 253 254Strain fitness (log2 ratio) -1 0 1 2at 251.336 kb on + strand, within IAI46_01130at 251.406 kb on + strand, within IAI46_01130at 251.406 kb on + strand, within IAI46_01130at 251.439 kb on - strand, within IAI46_01130at 251.527 kb on + strand, within IAI46_01130at 251.527 kb on + strand, within IAI46_01130at 251.528 kb on - strand, within IAI46_01130at 251.617 kb on + strand, within IAI46_01130at 251.618 kb on - strand, within IAI46_01130at 251.624 kb on - strand, within IAI46_01130at 251.744 kb on + strand, within IAI46_01130at 251.744 kb on + strand, within IAI46_01130at 251.803 kb on - strand, within IAI46_01130at 251.851 kb on + strand, within IAI46_01130at 251.852 kb on - strand, within IAI46_01130at 251.852 kb on - strand, within IAI46_01130at 251.886 kb on + strandat 252.055 kb on + strandat 252.055 kb on + strandat 252.056 kb on - strandat 252.071 kb on + strandat 252.071 kb on + strandat 252.072 kb on - strandat 252.082 kb on + strandat 252.082 kb on + strandat 252.083 kb on - strandat 252.083 kb on - strandat 252.157 kb on + strandat 252.224 kb on + strandat 252.270 kb on + strandat 252.270 kb on + strandat 252.270 kb on + strandat 252.270 kb on + strandat 252.271 kb on - strandat 252.271 kb on - strandat 252.325 kb on + strandat 252.326 kb on - strandat 252.420 kb on + strandat 252.420 kb on + strandat 252.481 kb on + strand, within IAI46_01135at 252.494 kb on - strand, within IAI46_01135at 252.590 kb on + strand, within IAI46_01135at 252.591 kb on - strand, within IAI46_01135at 252.638 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.711 kb on - strand, within IAI46_01135at 252.814 kb on - strand, within IAI46_01135at 252.838 kb on + strand, within IAI46_01135at 252.838 kb on + strand, within IAI46_01135at 252.839 kb on - strand, within IAI46_01135at 252.875 kb on + strand, within IAI46_01135at 252.875 kb on + strand, within IAI46_01135at 252.876 kb on - strand, within IAI46_01135at 252.940 kb on - strand, within IAI46_01135at 252.995 kb on - strand, within IAI46_01135at 252.995 kb on - strand, within IAI46_01135at 253.004 kb on + strand, within IAI46_01135at 253.004 kb on + strand, within IAI46_01135at 253.007 kb on + strand, within IAI46_01135at 253.007 kb on + strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.038 kb on - strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.041 kb on - strand, within IAI46_01135at 253.041 kb on - strand, within IAI46_01135at 253.102 kb on + strand, within IAI46_01135at 253.102 kb on + strand, within IAI46_01135at 253.103 kb on - strand, within IAI46_01135at 253.103 kb on - strand, within IAI46_01135at 253.108 kb on - strand, within IAI46_01135at 253.113 kb on - strand, within IAI46_01135at 253.174 kb on + strand, within IAI46_01135at 253.174 kb on + strand, within IAI46_01135at 253.184 kb on + strand, within IAI46_01135at 253.185 kb on - strand, within IAI46_01135at 253.193 kb on + strand, within IAI46_01135at 253.275 kb on + strand, within IAI46_01135at 253.276 kb on - strand, within IAI46_01135at 253.303 kb on + strand, within IAI46_01135at 253.304 kb on - strand, within IAI46_01135at 253.304 kb on - strand, within IAI46_01135at 253.314 kb on - strand, within IAI46_01135at 253.319 kb on + strand, within IAI46_01135at 253.320 kb on - strand, within IAI46_01135at 253.359 kb on + strand, within IAI46_01135at 253.359 kb on + strand, within IAI46_01135at 253.360 kb on - strand, within IAI46_01135at 253.360 kb on - strand, within IAI46_01135at 253.404 kb on - strandat 253.476 kb on - strandat 253.494 kb on - strandat 253.507 kb on - strandat 253.516 kb on + strandat 253.516 kb on + strandat 253.516 kb on + strandat 253.517 kb on - strandat 253.563 kb on + strandat 253.581 kb on + strandat 253.581 kb on + strandat 253.581 kb on + strandat 253.581 kb on + strandat 253.581 kb on + strandat 253.601 kb on + strandat 253.601 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.619 kb on + strandat 253.647 kb on + strandat 253.647 kb on + strandat 253.648 kb on - strandat 253.648 kb on - strandat 253.888 kb on - strand, within IAI46_01140at 253.896 kb on - strand, within IAI46_01140at 254.008 kb on - strand, within IAI46_01140at 254.008 kb on - strand, within IAI46_01140at 254.008 kb on - strand, within IAI46_01140at 254.010 kb on - strand, within IAI46_01140at 254.214 kb on - strand, within IAI46_01140at 254.227 kb on - strand, within IAI46_01140at 254.273 kb on + strand, within IAI46_01140at 254.273 kb on + strand, within IAI46_01140at 254.274 kb on - strand, within IAI46_01140at 254.310 kb on + strand, within IAI46_01140at 254.310 kb on + strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.377 kb on - strand, within IAI46_01140at 254.378 kb on + strand, within IAI46_01140at 254.379 kb on - strand, within IAI46_01140at 254.405 kb on + strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.409 kb on + strand, within IAI46_01140at 254.409 kb on + strand, within IAI46_01140at 254.409 kb on + strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.459 kb on + strand, within IAI46_01140at 254.459 kb on + strand, within IAI46_01140at 254.460 kb on - strand, within IAI46_01140

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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251,336 + IAI46_01130 0.66 +0.4
251,406 + IAI46_01130 0.69 +0.7
251,406 + IAI46_01130 0.69 +0.7
251,439 - IAI46_01130 0.71 +0.1
251,527 + IAI46_01130 0.75 -0.4
251,527 + IAI46_01130 0.75 +0.6
251,528 - IAI46_01130 0.75 -0.6
251,617 + IAI46_01130 0.79 -0.6
251,618 - IAI46_01130 0.79 +0.8
251,624 - IAI46_01130 0.79 -0.2
251,744 + IAI46_01130 0.85 +0.8
251,744 + IAI46_01130 0.85 -0.7
251,803 - IAI46_01130 0.87 +0.3
251,851 + IAI46_01130 0.90 -0.4
251,852 - IAI46_01130 0.90 +0.6
251,852 - IAI46_01130 0.90 +0.8
251,886 + -0.3
252,055 + +0.0
252,055 + +1.0
252,056 - -1.3
252,071 + +0.3
252,071 + +0.3
252,072 - -0.3
252,082 + +2.6
252,082 + -0.6
252,083 - -0.8
252,083 - +0.5
252,157 + +0.2
252,224 + -0.0
252,270 + +0.5
252,270 + -0.5
252,270 + +0.2
252,270 + +0.9
252,271 - +1.3
252,271 - -0.2
252,325 + +0.1
252,326 - +0.3
252,420 + -0.1
252,420 + -0.2
252,481 + IAI46_01135 0.14 +0.4
252,494 - IAI46_01135 0.15 -0.6
252,590 + IAI46_01135 0.23 +0.3
252,591 - IAI46_01135 0.23 -0.3
252,638 - IAI46_01135 0.27 -0.1
252,699 - IAI46_01135 0.32 +0.1
252,699 - IAI46_01135 0.32 +0.7
252,699 - IAI46_01135 0.32 -0.5
252,699 - IAI46_01135 0.32 -0.3
252,699 - IAI46_01135 0.32 +0.2
252,711 - IAI46_01135 0.33 +0.6
252,814 - IAI46_01135 0.42 -0.4
252,838 + IAI46_01135 0.44 +1.0
252,838 + IAI46_01135 0.44 +0.9
252,839 - IAI46_01135 0.44 +1.0
252,875 + IAI46_01135 0.47 +0.5
252,875 + IAI46_01135 0.47 +0.0
252,876 - IAI46_01135 0.47 -0.6
252,940 - IAI46_01135 0.52 -0.0
252,995 - IAI46_01135 0.57 -0.0
252,995 - IAI46_01135 0.57 -0.6
253,004 + IAI46_01135 0.58 -0.7
253,004 + IAI46_01135 0.58 -0.2
253,007 + IAI46_01135 0.58 -0.3
253,007 + IAI46_01135 0.58 +0.6
253,008 - IAI46_01135 0.58 -0.7
253,008 - IAI46_01135 0.58 -0.4
253,008 - IAI46_01135 0.58 +0.2
253,008 - IAI46_01135 0.58 +0.4
253,038 - IAI46_01135 0.61 +1.2
253,040 + IAI46_01135 0.61 +0.5
253,040 + IAI46_01135 0.61 +0.2
253,040 + IAI46_01135 0.61 -0.2
253,040 + IAI46_01135 0.61 -0.1
253,041 - IAI46_01135 0.61 +0.7
253,041 - IAI46_01135 0.61 -1.1
253,102 + IAI46_01135 0.66 -1.0
253,102 + IAI46_01135 0.66 +0.4
253,103 - IAI46_01135 0.66 +0.5
253,103 - IAI46_01135 0.66 +1.5
253,108 - IAI46_01135 0.66 -0.2
253,113 - IAI46_01135 0.67 +0.4
253,174 + IAI46_01135 0.72 -0.1
253,174 + IAI46_01135 0.72 +0.1
253,184 + IAI46_01135 0.73 -0.1
253,185 - IAI46_01135 0.73 +0.8
253,193 + IAI46_01135 0.74 -0.1
253,275 + IAI46_01135 0.80 -0.2
253,276 - IAI46_01135 0.81 +1.0
253,303 + IAI46_01135 0.83 +0.4
253,304 - IAI46_01135 0.83 +0.5
253,304 - IAI46_01135 0.83 +1.0
253,314 - IAI46_01135 0.84 +0.8
253,319 + IAI46_01135 0.84 +0.6
253,320 - IAI46_01135 0.84 -0.3
253,359 + IAI46_01135 0.87 -0.3
253,359 + IAI46_01135 0.87 +0.1
253,360 - IAI46_01135 0.88 -0.8
253,360 - IAI46_01135 0.88 -1.0
253,404 - -0.9
253,476 - -1.0
253,494 - +0.1
253,507 - +0.4
253,516 + -1.0
253,516 + -0.7
253,516 + -0.5
253,517 - -0.3
253,563 + -0.2
253,581 + +0.3
253,581 + -0.5
253,581 + -0.9
253,581 + +1.1
253,581 + -0.9
253,601 + -0.5
253,601 + +0.4
253,611 + -0.1
253,611 + +0.2
253,611 + -0.0
253,611 + -0.5
253,611 + +0.4
253,611 + +0.5
253,612 - +0.0
253,612 - -0.9
253,612 - +0.2
253,612 - +0.1
253,612 - -0.5
253,619 + -0.4
253,647 + +0.6
253,647 + +0.5
253,648 - -1.0
253,648 - +1.5
253,888 - IAI46_01140 0.20 +0.5
253,896 - IAI46_01140 0.20 +0.4
254,008 - IAI46_01140 0.29 -0.0
254,008 - IAI46_01140 0.29 +0.4
254,008 - IAI46_01140 0.29 +0.4
254,010 - IAI46_01140 0.29 +0.6
254,214 - IAI46_01140 0.44 +0.5
254,227 - IAI46_01140 0.45 +0.2
254,273 + IAI46_01140 0.49 +0.3
254,273 + IAI46_01140 0.49 +1.4
254,274 - IAI46_01140 0.49 -0.6
254,310 + IAI46_01140 0.51 +0.5
254,310 + IAI46_01140 0.51 -0.3
254,311 - IAI46_01140 0.51 +0.6
254,311 - IAI46_01140 0.51 -0.1
254,311 - IAI46_01140 0.51 +0.2
254,311 - IAI46_01140 0.51 +0.5
254,311 - IAI46_01140 0.51 +0.1
254,377 - IAI46_01140 0.56 +0.2
254,378 + IAI46_01140 0.56 +0.2
254,379 - IAI46_01140 0.57 +0.8
254,405 + IAI46_01140 0.58 +1.0
254,406 - IAI46_01140 0.59 -0.4
254,406 - IAI46_01140 0.59 +0.1
254,406 - IAI46_01140 0.59 +0.5
254,406 - IAI46_01140 0.59 +0.8
254,406 - IAI46_01140 0.59 +0.1
254,409 + IAI46_01140 0.59 +0.2
254,409 + IAI46_01140 0.59 -0.0
254,409 + IAI46_01140 0.59 +0.4
254,410 - IAI46_01140 0.59 -0.1
254,410 - IAI46_01140 0.59 +1.0
254,410 - IAI46_01140 0.59 +0.1
254,410 - IAI46_01140 0.59 -0.3
254,410 - IAI46_01140 0.59 +0.5
254,410 - IAI46_01140 0.59 +1.0
254,459 + IAI46_01140 0.63 +0.0
254,459 + IAI46_01140 0.63 +0.9
254,460 - IAI46_01140 0.63 +1.6

Or see this region's nucleotide sequence