Strain Fitness in Serratia liquefaciens MT49 around IAI46_00450

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00445 and IAI46_00450 are separated by 120 nucleotidesIAI46_00450 and IAI46_00460 are separated by 215 nucleotidesIAI46_00460 and IAI46_00465 overlap by 13 nucleotides IAI46_00445: IAI46_00445 - MFS transporter, at 101,250 to 102,581 _00445 IAI46_00450: IAI46_00450 - tRNA-Pro, at 102,702 to 102,778 _00450 IAI46_00460: IAI46_00460 - transcriptional regulator, at 102,994 to 103,350 _00460 IAI46_00465: IAI46_00465 - hypothetical protein, at 103,338 to 103,634 _00465 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1at 101.777 kb on + strand, within IAI46_00445at 101.778 kb on - strand, within IAI46_00445at 101.894 kb on + strand, within IAI46_00445at 101.982 kb on + strand, within IAI46_00445at 101.982 kb on + strand, within IAI46_00445at 101.983 kb on - strand, within IAI46_00445at 102.000 kb on + strand, within IAI46_00445at 102.000 kb on + strand, within IAI46_00445at 102.000 kb on + strand, within IAI46_00445at 102.000 kb on + strand, within IAI46_00445at 102.000 kb on + strand, within IAI46_00445at 102.000 kb on + strand, within IAI46_00445at 102.000 kb on + strand, within IAI46_00445at 102.001 kb on - strand, within IAI46_00445at 102.001 kb on - strand, within IAI46_00445at 102.001 kb on - strand, within IAI46_00445at 102.024 kb on + strand, within IAI46_00445at 102.024 kb on + strand, within IAI46_00445at 102.024 kb on + strand, within IAI46_00445at 102.024 kb on + strand, within IAI46_00445at 102.025 kb on - strand, within IAI46_00445at 102.025 kb on - strand, within IAI46_00445at 102.036 kb on + strand, within IAI46_00445at 102.036 kb on + strand, within IAI46_00445at 102.036 kb on + strand, within IAI46_00445at 102.036 kb on + strand, within IAI46_00445at 102.037 kb on - strand, within IAI46_00445at 102.037 kb on - strand, within IAI46_00445at 102.037 kb on - strand, within IAI46_00445at 102.037 kb on - strand, within IAI46_00445at 102.037 kb on - strand, within IAI46_00445at 102.037 kb on - strand, within IAI46_00445at 102.037 kb on - strand, within IAI46_00445at 102.043 kb on + strand, within IAI46_00445at 102.043 kb on + strand, within IAI46_00445at 102.044 kb on - strand, within IAI46_00445at 102.044 kb on - strand, within IAI46_00445at 102.044 kb on - strand, within IAI46_00445at 102.044 kb on - strand, within IAI46_00445at 102.044 kb on - strand, within IAI46_00445at 102.075 kb on + strand, within IAI46_00445at 102.097 kb on + strand, within IAI46_00445at 102.097 kb on - strand, within IAI46_00445at 102.234 kb on - strand, within IAI46_00445at 102.234 kb on - strand, within IAI46_00445at 102.320 kb on + strand, within IAI46_00445at 102.320 kb on + strand, within IAI46_00445at 102.320 kb on + strand, within IAI46_00445at 102.321 kb on - strand, within IAI46_00445at 102.417 kb on + strand, within IAI46_00445at 102.607 kb on + strandat 102.618 kb on - strandat 102.629 kb on - strandat 102.671 kb on - strandat 102.685 kb on + strandat 102.685 kb on + strandat 102.797 kb on + strandat 102.797 kb on + strandat 102.797 kb on + strandat 102.797 kb on + strandat 102.798 kb on - strandat 102.822 kb on + strandat 102.822 kb on + strandat 102.822 kb on + strandat 102.822 kb on + strandat 102.822 kb on + strandat 102.822 kb on + strandat 102.823 kb on - strandat 102.823 kb on - strandat 102.823 kb on - strandat 102.824 kb on + strandat 102.824 kb on + strandat 102.824 kb on + strandat 102.824 kb on + strandat 102.824 kb on + strandat 102.824 kb on + strandat 102.825 kb on - strandat 102.825 kb on - strandat 102.825 kb on - strandat 102.825 kb on - strandat 102.826 kb on + strandat 102.826 kb on + strandat 102.826 kb on + strandat 102.827 kb on - strandat 102.827 kb on - strandat 102.827 kb on - strandat 102.828 kb on + strandat 102.828 kb on + strandat 102.828 kb on + strandat 102.828 kb on + strandat 102.828 kb on + strandat 102.829 kb on - strandat 102.829 kb on - strandat 102.829 kb on - strandat 102.922 kb on - strandat 102.959 kb on + strandat 102.962 kb on - strandat 102.984 kb on + strandat 103.013 kb on - strandat 103.038 kb on - strand, within IAI46_00460at 103.038 kb on - strand, within IAI46_00460at 103.048 kb on - strand, within IAI46_00460at 103.048 kb on - strand, within IAI46_00460at 103.065 kb on + strand, within IAI46_00460at 103.066 kb on - strand, within IAI46_00460at 103.088 kb on - strand, within IAI46_00460at 103.104 kb on + strand, within IAI46_00460at 103.104 kb on + strand, within IAI46_00460at 103.104 kb on + strand, within IAI46_00460at 103.105 kb on - strand, within IAI46_00460at 103.105 kb on - strand, within IAI46_00460at 103.109 kb on - strand, within IAI46_00460at 103.130 kb on - strand, within IAI46_00460at 103.130 kb on - strand, within IAI46_00460at 103.158 kb on + strand, within IAI46_00460at 103.158 kb on + strand, within IAI46_00460at 103.159 kb on - strand, within IAI46_00460at 103.159 kb on - strand, within IAI46_00460at 103.177 kb on + strand, within IAI46_00460at 103.217 kb on + strand, within IAI46_00460at 103.217 kb on + strand, within IAI46_00460at 103.217 kb on + strand, within IAI46_00460at 103.217 kb on + strand, within IAI46_00460at 103.218 kb on - strand, within IAI46_00460at 103.218 kb on - strand, within IAI46_00460at 103.218 kb on - strand, within IAI46_00460at 103.218 kb on - strand, within IAI46_00460at 103.218 kb on - strand, within IAI46_00460at 103.244 kb on - strand, within IAI46_00460at 103.306 kb on + strand, within IAI46_00460at 103.327 kb on + strandat 103.327 kb on + strandat 103.327 kb on + strandat 103.327 kb on + strandat 103.328 kb on - strandat 103.328 kb on - strandat 103.328 kb on - strandat 103.333 kb on + strandat 103.362 kb on + strandat 103.362 kb on + strandat 103.362 kb on + strandat 103.362 kb on + strandat 103.363 kb on - strandat 103.363 kb on - strandat 103.363 kb on - strandat 103.403 kb on + strand, within IAI46_00465at 103.448 kb on + strand, within IAI46_00465at 103.448 kb on + strand, within IAI46_00465at 103.449 kb on - strand, within IAI46_00465at 103.449 kb on - strand, within IAI46_00465at 103.478 kb on - strand, within IAI46_00465at 103.482 kb on + strand, within IAI46_00465at 103.483 kb on - strand, within IAI46_00465at 103.483 kb on - strand, within IAI46_00465at 103.483 kb on - strand, within IAI46_00465at 103.485 kb on + strand, within IAI46_00465at 103.486 kb on - strand, within IAI46_00465at 103.507 kb on + strand, within IAI46_00465at 103.507 kb on + strand, within IAI46_00465at 103.519 kb on + strand, within IAI46_00465at 103.519 kb on + strand, within IAI46_00465at 103.525 kb on + strand, within IAI46_00465at 103.525 kb on + strand, within IAI46_00465at 103.545 kb on + strand, within IAI46_00465at 103.546 kb on - strand, within IAI46_00465at 103.592 kb on + strand, within IAI46_00465at 103.592 kb on + strand, within IAI46_00465at 103.593 kb on - strand, within IAI46_00465at 103.604 kb on + strand, within IAI46_00465at 103.605 kb on - strandat 103.605 kb on - strandat 103.605 kb on - strandat 103.605 kb on - strandat 103.617 kb on + strandat 103.661 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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101,777 + IAI46_00445 0.40 -1.6
101,778 - IAI46_00445 0.40 +0.2
101,894 + IAI46_00445 0.48 -0.3
101,982 + IAI46_00445 0.55 -0.4
101,982 + IAI46_00445 0.55 -0.1
101,983 - IAI46_00445 0.55 -0.9
102,000 + IAI46_00445 0.56 +0.0
102,000 + IAI46_00445 0.56 +0.3
102,000 + IAI46_00445 0.56 -0.0
102,000 + IAI46_00445 0.56 -0.0
102,000 + IAI46_00445 0.56 +0.4
102,000 + IAI46_00445 0.56 +1.0
102,000 + IAI46_00445 0.56 +0.3
102,001 - IAI46_00445 0.56 -2.6
102,001 - IAI46_00445 0.56 +0.1
102,001 - IAI46_00445 0.56 -0.3
102,024 + IAI46_00445 0.58 +0.7
102,024 + IAI46_00445 0.58 +0.2
102,024 + IAI46_00445 0.58 -1.0
102,024 + IAI46_00445 0.58 -0.1
102,025 - IAI46_00445 0.58 +0.7
102,025 - IAI46_00445 0.58 -1.7
102,036 + IAI46_00445 0.59 +1.5
102,036 + IAI46_00445 0.59 +0.1
102,036 + IAI46_00445 0.59 -2.5
102,036 + IAI46_00445 0.59 -2.0
102,037 - IAI46_00445 0.59 +1.3
102,037 - IAI46_00445 0.59 +0.6
102,037 - IAI46_00445 0.59 +0.1
102,037 - IAI46_00445 0.59 -0.7
102,037 - IAI46_00445 0.59 -0.1
102,037 - IAI46_00445 0.59 -0.6
102,037 - IAI46_00445 0.59 -0.0
102,043 + IAI46_00445 0.60 -0.1
102,043 + IAI46_00445 0.60 +0.2
102,044 - IAI46_00445 0.60 -0.1
102,044 - IAI46_00445 0.60 +0.1
102,044 - IAI46_00445 0.60 +1.4
102,044 - IAI46_00445 0.60 -0.1
102,044 - IAI46_00445 0.60 +0.2
102,075 + IAI46_00445 0.62 +0.0
102,097 + IAI46_00445 0.64 +1.0
102,097 - IAI46_00445 0.64 -1.1
102,234 - IAI46_00445 0.74 -0.0
102,234 - IAI46_00445 0.74 -0.3
102,320 + IAI46_00445 0.80 -0.2
102,320 + IAI46_00445 0.80 -0.9
102,320 + IAI46_00445 0.80 -0.6
102,321 - IAI46_00445 0.80 +0.1
102,417 + IAI46_00445 0.88 -0.1
102,607 + +0.0
102,618 - -0.3
102,629 - -0.1
102,671 - -0.8
102,685 + -0.1
102,685 + +0.6
102,797 + -0.1
102,797 + +0.1
102,797 + -0.1
102,797 + +0.4
102,798 - +0.5
102,822 + +0.5
102,822 + +0.6
102,822 + +0.8
102,822 + +0.6
102,822 + +0.5
102,822 + -0.8
102,823 - -1.5
102,823 - -1.5
102,823 - +0.4
102,824 + -0.1
102,824 + +0.9
102,824 + -0.2
102,824 + -0.2
102,824 + +0.9
102,824 + +0.9
102,825 - -0.2
102,825 - +1.3
102,825 - +0.4
102,825 - +0.8
102,826 + +0.2
102,826 + -0.5
102,826 + -0.2
102,827 - -0.3
102,827 - -0.1
102,827 - +0.0
102,828 + +0.4
102,828 + +0.5
102,828 + +0.1
102,828 + +0.1
102,828 + -0.4
102,829 - -0.2
102,829 - +0.3
102,829 - -1.5
102,922 - -0.4
102,959 + -0.2
102,962 - -0.2
102,984 + -0.3
103,013 - +0.7
103,038 - IAI46_00460 0.12 -0.3
103,038 - IAI46_00460 0.12 -0.4
103,048 - IAI46_00460 0.15 +0.2
103,048 - IAI46_00460 0.15 +1.1
103,065 + IAI46_00460 0.20 +0.3
103,066 - IAI46_00460 0.20 +1.3
103,088 - IAI46_00460 0.26 -0.3
103,104 + IAI46_00460 0.31 +0.6
103,104 + IAI46_00460 0.31 +1.3
103,104 + IAI46_00460 0.31 +1.0
103,105 - IAI46_00460 0.31 +0.3
103,105 - IAI46_00460 0.31 +0.8
103,109 - IAI46_00460 0.32 +0.2
103,130 - IAI46_00460 0.38 +0.2
103,130 - IAI46_00460 0.38 +1.5
103,158 + IAI46_00460 0.46 +0.2
103,158 + IAI46_00460 0.46 +0.1
103,159 - IAI46_00460 0.46 +0.9
103,159 - IAI46_00460 0.46 -0.1
103,177 + IAI46_00460 0.51 +1.0
103,217 + IAI46_00460 0.62 -0.8
103,217 + IAI46_00460 0.62 -1.3
103,217 + IAI46_00460 0.62 -0.0
103,217 + IAI46_00460 0.62 +0.5
103,218 - IAI46_00460 0.63 +0.1
103,218 - IAI46_00460 0.63 +0.8
103,218 - IAI46_00460 0.63 -0.4
103,218 - IAI46_00460 0.63 +0.2
103,218 - IAI46_00460 0.63 -0.8
103,244 - IAI46_00460 0.70 +0.8
103,306 + IAI46_00460 0.87 -0.4
103,327 + +1.0
103,327 + +0.2
103,327 + -1.0
103,327 + +0.1
103,328 - -0.6
103,328 - +0.1
103,328 - -0.8
103,333 + +0.7
103,362 + -0.1
103,362 + -0.7
103,362 + +0.1
103,362 + +1.1
103,363 - -0.3
103,363 - +0.8
103,363 - -1.2
103,403 + IAI46_00465 0.22 -0.3
103,448 + IAI46_00465 0.37 +0.4
103,448 + IAI46_00465 0.37 -0.1
103,449 - IAI46_00465 0.37 +0.1
103,449 - IAI46_00465 0.37 +0.2
103,478 - IAI46_00465 0.47 +0.5
103,482 + IAI46_00465 0.48 +0.7
103,483 - IAI46_00465 0.49 +0.4
103,483 - IAI46_00465 0.49 -1.6
103,483 - IAI46_00465 0.49 +0.4
103,485 + IAI46_00465 0.49 -0.6
103,486 - IAI46_00465 0.50 -0.1
103,507 + IAI46_00465 0.57 -0.8
103,507 + IAI46_00465 0.57 -0.2
103,519 + IAI46_00465 0.61 -0.2
103,519 + IAI46_00465 0.61 +0.0
103,525 + IAI46_00465 0.63 -0.5
103,525 + IAI46_00465 0.63 -0.3
103,545 + IAI46_00465 0.70 +0.2
103,546 - IAI46_00465 0.70 +1.1
103,592 + IAI46_00465 0.86 -0.5
103,592 + IAI46_00465 0.86 -0.8
103,593 - IAI46_00465 0.86 -0.1
103,604 + IAI46_00465 0.90 -0.3
103,605 - -0.2
103,605 - -0.5
103,605 - -0.7
103,605 - +0.5
103,617 + -0.1
103,661 + -0.1

Or see this region's nucleotide sequence