Experiment: m.b. Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0529 and Echvi_0530 are separated by 45 nucleotides Echvi_0530 and Echvi_0531 are separated by 8 nucleotides Echvi_0531 and Echvi_0532 are separated by 45 nucleotides Echvi_0532 and Echvi_0533 are separated by 48 nucleotides Echvi_0533 and Echvi_0534 are separated by 47 nucleotides Echvi_0534 and Echvi_0535 are separated by 142 nucleotides Echvi_0535 and Echvi_0536 are separated by 234 nucleotides Echvi_0536 and Echvi_0537 are separated by 77 nucleotides
Echvi_0529: Echvi_0529 - Predicted endonuclease containing a URI domain, at 595,852 to 596,106
_0529
Echvi_0530: Echvi_0530 - tRNA, at 596,152 to 596,228
_0530
Echvi_0531: Echvi_0531 - Predicted endonuclease containing a URI domain, at 596,237 to 596,491
_0531
Echvi_0532: Echvi_0532 - tRNA, at 596,537 to 596,611
_0532
Echvi_0533: Echvi_0533 - tRNA, at 596,660 to 596,737
_0533
Echvi_0534: Echvi_0534 - tRNA, at 596,785 to 596,864
_0534
Echvi_0535: Echvi_0535 - NAD-dependent aldehyde dehydrogenases, at 597,007 to 598,551
_0535
Echvi_0536: Echvi_0536 - hypothetical protein, at 598,786 to 599,355
_0536
Echvi_0537: Echvi_0537 - hypothetical protein, at 599,433 to 600,113
_0537
Position (kb) 597
598
599 Strain fitness (log2 ratio) -2
-1
0
1
2 at 596.521 kb on + strand at 596.955 kb on + strand at 596.966 kb on + strand at 596.990 kb on + strand at 597.012 kb on + strand at 597.021 kb on + strand at 597.048 kb on + strand at 597.048 kb on + strand at 597.049 kb on - strand at 597.051 kb on + strand at 597.053 kb on + strand at 597.053 kb on + strand at 597.053 kb on + strand at 597.053 kb on + strand at 597.054 kb on - strand at 597.081 kb on + strand at 597.081 kb on + strand at 597.083 kb on + strand at 597.083 kb on + strand at 597.083 kb on + strand at 597.083 kb on + strand at 597.084 kb on - strand at 597.171 kb on + strand, within Echvi_0535 at 597.180 kb on + strand, within Echvi_0535 at 597.180 kb on + strand, within Echvi_0535 at 597.282 kb on + strand, within Echvi_0535 at 597.283 kb on - strand, within Echvi_0535 at 597.316 kb on - strand, within Echvi_0535 at 597.317 kb on + strand, within Echvi_0535 at 597.318 kb on - strand, within Echvi_0535 at 597.325 kb on - strand, within Echvi_0535 at 597.329 kb on + strand, within Echvi_0535 at 597.329 kb on + strand, within Echvi_0535 at 597.330 kb on - strand, within Echvi_0535 at 597.330 kb on - strand, within Echvi_0535 at 597.330 kb on - strand, within Echvi_0535 at 597.330 kb on - strand, within Echvi_0535 at 597.388 kb on + strand, within Echvi_0535 at 597.388 kb on + strand, within Echvi_0535 at 597.388 kb on + strand, within Echvi_0535 at 597.404 kb on + strand, within Echvi_0535 at 597.404 kb on + strand, within Echvi_0535 at 597.405 kb on - strand, within Echvi_0535 at 597.405 kb on - strand, within Echvi_0535 at 597.419 kb on + strand, within Echvi_0535 at 597.419 kb on + strand, within Echvi_0535 at 597.420 kb on - strand, within Echvi_0535 at 597.420 kb on - strand, within Echvi_0535 at 597.420 kb on - strand, within Echvi_0535 at 597.452 kb on - strand, within Echvi_0535 at 597.498 kb on - strand, within Echvi_0535 at 597.520 kb on + strand, within Echvi_0535 at 597.648 kb on + strand, within Echvi_0535 at 597.648 kb on + strand, within Echvi_0535 at 597.649 kb on - strand, within Echvi_0535 at 597.649 kb on - strand, within Echvi_0535 at 597.702 kb on + strand, within Echvi_0535 at 597.702 kb on + strand, within Echvi_0535 at 597.702 kb on + strand, within Echvi_0535 at 597.703 kb on - strand, within Echvi_0535 at 597.703 kb on - strand, within Echvi_0535 at 597.703 kb on - strand, within Echvi_0535 at 597.730 kb on - strand, within Echvi_0535 at 597.732 kb on + strand, within Echvi_0535 at 597.732 kb on + strand, within Echvi_0535 at 597.732 kb on + strand, within Echvi_0535 at 597.733 kb on - strand, within Echvi_0535 at 597.733 kb on - strand, within Echvi_0535 at 597.733 kb on - strand, within Echvi_0535 at 597.769 kb on + strand, within Echvi_0535 at 597.843 kb on + strand, within Echvi_0535 at 597.921 kb on + strand, within Echvi_0535 at 597.922 kb on - strand, within Echvi_0535 at 597.925 kb on - strand, within Echvi_0535 at 597.925 kb on - strand, within Echvi_0535 at 597.943 kb on + strand, within Echvi_0535 at 598.075 kb on + strand, within Echvi_0535 at 598.075 kb on + strand, within Echvi_0535 at 598.103 kb on + strand, within Echvi_0535 at 598.103 kb on + strand, within Echvi_0535 at 598.103 kb on + strand, within Echvi_0535 at 598.104 kb on - strand, within Echvi_0535 at 598.104 kb on - strand, within Echvi_0535 at 598.107 kb on + strand, within Echvi_0535 at 598.107 kb on + strand, within Echvi_0535 at 598.107 kb on + strand, within Echvi_0535 at 598.107 kb on + strand, within Echvi_0535 at 598.108 kb on - strand, within Echvi_0535 at 598.108 kb on - strand, within Echvi_0535 at 598.134 kb on + strand, within Echvi_0535 at 598.137 kb on + strand, within Echvi_0535 at 598.137 kb on + strand, within Echvi_0535 at 598.138 kb on - strand, within Echvi_0535 at 598.138 kb on - strand, within Echvi_0535 at 598.138 kb on - strand, within Echvi_0535 at 598.138 kb on - strand, within Echvi_0535 at 598.183 kb on - strand, within Echvi_0535 at 598.183 kb on - strand, within Echvi_0535 at 598.238 kb on + strand, within Echvi_0535 at 598.247 kb on - strand, within Echvi_0535 at 598.247 kb on - strand, within Echvi_0535 at 598.300 kb on + strand, within Echvi_0535 at 598.300 kb on + strand, within Echvi_0535 at 598.434 kb on - strand at 598.441 kb on - strand at 598.459 kb on - strand at 598.462 kb on + strand at 598.463 kb on - strand at 598.463 kb on - strand at 598.464 kb on + strand at 598.491 kb on + strand at 598.495 kb on + strand at 598.496 kb on - strand at 598.570 kb on - strand at 598.587 kb on - strand at 598.619 kb on - strand at 598.622 kb on + strand at 598.623 kb on - strand at 598.639 kb on + strand at 598.653 kb on + strand at 598.653 kb on + strand at 598.653 kb on + strand at 598.657 kb on + strand at 598.657 kb on + strand at 598.658 kb on - strand at 598.751 kb on + strand at 598.751 kb on + strand at 598.752 kb on - strand at 598.752 kb on - strand at 598.753 kb on + strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.758 kb on + strand at 598.758 kb on + strand at 598.759 kb on - strand at 598.761 kb on - strand at 598.764 kb on + strand at 598.765 kb on - strand at 598.765 kb on - strand at 598.765 kb on - strand at 598.796 kb on - strand at 598.823 kb on + strand at 598.827 kb on + strand at 598.827 kb on + strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.884 kb on + strand, within Echvi_0536 at 598.884 kb on + strand, within Echvi_0536 at 598.885 kb on - strand, within Echvi_0536 at 598.972 kb on - strand, within Echvi_0536 at 599.017 kb on - strand, within Echvi_0536 at 599.151 kb on + strand, within Echvi_0536 at 599.151 kb on + strand, within Echvi_0536 at 599.160 kb on + strand, within Echvi_0536 at 599.160 kb on + strand, within Echvi_0536 at 599.161 kb on - strand, within Echvi_0536 at 599.195 kb on + strand, within Echvi_0536 at 599.196 kb on - strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.206 kb on + strand, within Echvi_0536 at 599.312 kb on + strand at 599.442 kb on + strand at 599.442 kb on + strand at 599.443 kb on - strand at 599.450 kb on - strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.453 kb on - strand at 599.453 kb on - strand at 599.526 kb on + strand, within Echvi_0537 at 599.548 kb on - strand, within Echvi_0537 at 599.548 kb on - strand, within Echvi_0537 at 599.549 kb on + strand, within Echvi_0537 at 599.549 kb on + strand, within Echvi_0537 at 599.550 kb on - strand, within Echvi_0537
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.05 mg/ml remove 596,521 + +0.2 596,955 + +0.0 596,966 + -0.5 596,990 + -0.7 597,012 + +0.2 597,021 + +0.6 597,048 + -0.3 597,048 + -0.3 597,049 - -0.8 597,051 + +0.3 597,053 + -0.9 597,053 + -2.4 597,053 + +0.2 597,053 + -0.2 597,054 - -1.2 597,081 + -0.2 597,081 + -1.4 597,083 + -0.2 597,083 + -0.3 597,083 + -0.2 597,083 + -0.2 597,084 - -1.3 597,171 + Echvi_0535 0.11 +0.2 597,180 + Echvi_0535 0.11 +0.2 597,180 + Echvi_0535 0.11 -1.7 597,282 + Echvi_0535 0.18 -1.5 597,283 - Echvi_0535 0.18 -0.5 597,316 - Echvi_0535 0.20 +1.0 597,317 + Echvi_0535 0.20 -0.6 597,318 - Echvi_0535 0.20 -0.4 597,325 - Echvi_0535 0.21 +0.8 597,329 + Echvi_0535 0.21 +0.6 597,329 + Echvi_0535 0.21 +0.7 597,330 - Echvi_0535 0.21 -0.4 597,330 - Echvi_0535 0.21 -1.1 597,330 - Echvi_0535 0.21 +0.2 597,330 - Echvi_0535 0.21 -0.8 597,388 + Echvi_0535 0.25 -2.5 597,388 + Echvi_0535 0.25 -0.6 597,388 + Echvi_0535 0.25 -1.1 597,404 + Echvi_0535 0.26 -1.0 597,404 + Echvi_0535 0.26 +0.5 597,405 - Echvi_0535 0.26 -0.5 597,405 - Echvi_0535 0.26 -1.5 597,419 + Echvi_0535 0.27 -0.4 597,419 + Echvi_0535 0.27 -1.0 597,420 - Echvi_0535 0.27 +0.1 597,420 - Echvi_0535 0.27 -1.0 597,420 - Echvi_0535 0.27 -0.1 597,452 - Echvi_0535 0.29 -1.0 597,498 - Echvi_0535 0.32 -0.4 597,520 + Echvi_0535 0.33 -1.6 597,648 + Echvi_0535 0.41 -0.2 597,648 + Echvi_0535 0.41 -0.8 597,649 - Echvi_0535 0.42 +1.2 597,649 - Echvi_0535 0.42 -1.2 597,702 + Echvi_0535 0.45 +0.0 597,702 + Echvi_0535 0.45 +1.5 597,702 + Echvi_0535 0.45 -0.5 597,703 - Echvi_0535 0.45 -1.1 597,703 - Echvi_0535 0.45 -0.1 597,703 - Echvi_0535 0.45 +1.1 597,730 - Echvi_0535 0.47 -0.5 597,732 + Echvi_0535 0.47 +0.4 597,732 + Echvi_0535 0.47 +0.0 597,732 + Echvi_0535 0.47 +0.6 597,733 - Echvi_0535 0.47 +0.6 597,733 - Echvi_0535 0.47 -0.8 597,733 - Echvi_0535 0.47 -0.2 597,769 + Echvi_0535 0.49 -1.3 597,843 + Echvi_0535 0.54 -0.1 597,921 + Echvi_0535 0.59 -0.7 597,922 - Echvi_0535 0.59 -1.4 597,925 - Echvi_0535 0.59 -0.9 597,925 - Echvi_0535 0.59 +2.0 597,943 + Echvi_0535 0.61 +0.1 598,075 + Echvi_0535 0.69 -0.2 598,075 + Echvi_0535 0.69 -0.0 598,103 + Echvi_0535 0.71 +0.0 598,103 + Echvi_0535 0.71 -0.3 598,103 + Echvi_0535 0.71 +0.2 598,104 - Echvi_0535 0.71 +0.2 598,104 - Echvi_0535 0.71 -0.2 598,107 + Echvi_0535 0.71 -0.3 598,107 + Echvi_0535 0.71 +0.5 598,107 + Echvi_0535 0.71 +0.1 598,107 + Echvi_0535 0.71 +0.5 598,108 - Echvi_0535 0.71 -0.5 598,108 - Echvi_0535 0.71 -0.2 598,134 + Echvi_0535 0.73 -1.4 598,137 + Echvi_0535 0.73 +0.7 598,137 + Echvi_0535 0.73 -0.6 598,138 - Echvi_0535 0.73 -0.6 598,138 - Echvi_0535 0.73 -0.7 598,138 - Echvi_0535 0.73 +0.0 598,138 - Echvi_0535 0.73 +1.3 598,183 - Echvi_0535 0.76 -1.6 598,183 - Echvi_0535 0.76 +0.3 598,238 + Echvi_0535 0.80 +0.3 598,247 - Echvi_0535 0.80 -0.0 598,247 - Echvi_0535 0.80 -0.8 598,300 + Echvi_0535 0.84 -1.2 598,300 + Echvi_0535 0.84 +0.1 598,434 - +1.0 598,441 - -0.2 598,459 - -0.3 598,462 + +0.1 598,463 - -1.2 598,463 - -0.9 598,464 + +0.1 598,491 + -0.5 598,495 + +0.1 598,496 - -0.3 598,570 - +0.1 598,587 - +1.0 598,619 - -1.0 598,622 + -0.3 598,623 - +0.0 598,639 + -0.4 598,653 + +1.0 598,653 + -0.4 598,653 + +0.0 598,657 + -0.1 598,657 + -0.3 598,658 - +0.1 598,751 + +0.1 598,751 + +2.1 598,752 - -0.9 598,752 - +0.0 598,753 + -0.5 598,754 - +0.2 598,754 - +0.4 598,754 - -0.7 598,754 - +0.3 598,758 + -0.8 598,758 + +0.5 598,759 - -1.6 598,761 - +1.4 598,764 + -0.2 598,765 - +0.7 598,765 - -0.5 598,765 - +0.0 598,796 - -0.1 598,823 + +0.8 598,827 + -0.5 598,827 + +0.0 598,828 - +0.0 598,828 - -0.4 598,828 - -0.3 598,828 - +0.4 598,884 + Echvi_0536 0.17 -0.3 598,884 + Echvi_0536 0.17 +1.0 598,885 - Echvi_0536 0.17 +2.0 598,972 - Echvi_0536 0.33 +2.6 599,017 - Echvi_0536 0.41 -0.0 599,151 + Echvi_0536 0.64 -0.2 599,151 + Echvi_0536 0.64 -0.3 599,160 + Echvi_0536 0.66 +2.6 599,160 + Echvi_0536 0.66 -0.1 599,161 - Echvi_0536 0.66 -1.1 599,195 + Echvi_0536 0.72 -0.1 599,196 - Echvi_0536 0.72 +0.0 599,202 + Echvi_0536 0.73 -0.9 599,202 + Echvi_0536 0.73 +0.5 599,202 + Echvi_0536 0.73 -1.0 599,206 + Echvi_0536 0.74 -0.6 599,312 + -0.4 599,442 + +0.1 599,442 + -0.1 599,443 - +0.4 599,450 - -0.8 599,452 + -0.5 599,452 + -0.0 599,452 + +0.2 599,452 + -0.2 599,453 - +0.7 599,453 - +1.5 599,526 + Echvi_0537 0.14 +0.7 599,548 - Echvi_0537 0.17 +0.2 599,548 - Echvi_0537 0.17 +0.9 599,549 + Echvi_0537 0.17 -1.5 599,549 + Echvi_0537 0.17 -1.2 599,550 - Echvi_0537 0.17 -0.8
Or see this region's nucleotide sequence