Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4400

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4399 and EX28DRAFT_4400 are separated by 21 nucleotidesEX28DRAFT_4400 and EX28DRAFT_4401 are separated by 399 nucleotidesEX28DRAFT_4401 and EX28DRAFT_4402 are separated by 83 nucleotides EX28DRAFT_4399: EX28DRAFT_4399 - glycerol kinase, at 61,538 to 63,046 _4399 EX28DRAFT_4400: EX28DRAFT_4400 - MIP family channel proteins, at 63,068 to 63,913 _4400 EX28DRAFT_4401: EX28DRAFT_4401 - Uncharacterized protein conserved in bacteria, at 64,313 to 64,552 _4401 EX28DRAFT_4402: EX28DRAFT_4402 - regulator of ribonuclease activity A, at 64,636 to 65,121 _4402 Position (kb) 63 64Strain fitness (log2 ratio) -2 -1 0 1 2 3at 62.145 kb on + strand, within EX28DRAFT_4399at 62.233 kb on + strand, within EX28DRAFT_4399at 62.233 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.251 kb on - strand, within EX28DRAFT_4399at 62.363 kb on - strand, within EX28DRAFT_4399at 62.497 kb on - strand, within EX28DRAFT_4399at 62.578 kb on + strand, within EX28DRAFT_4399at 62.600 kb on + strand, within EX28DRAFT_4399at 62.640 kb on + strand, within EX28DRAFT_4399at 62.677 kb on - strand, within EX28DRAFT_4399at 62.677 kb on - strand, within EX28DRAFT_4399at 62.751 kb on + strand, within EX28DRAFT_4399at 62.752 kb on - strand, within EX28DRAFT_4399at 62.755 kb on + strand, within EX28DRAFT_4399at 62.755 kb on + strand, within EX28DRAFT_4399at 63.049 kb on + strandat 63.049 kb on + strandat 63.049 kb on + strandat 63.049 kb on + strandat 63.050 kb on - strandat 63.050 kb on - strandat 63.050 kb on - strandat 63.138 kb on - strandat 63.152 kb on + strandat 63.153 kb on - strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.167 kb on - strand, within EX28DRAFT_4400at 63.219 kb on + strand, within EX28DRAFT_4400at 63.553 kb on + strand, within EX28DRAFT_4400at 63.553 kb on + strand, within EX28DRAFT_4400at 63.587 kb on - strand, within EX28DRAFT_4400at 63.588 kb on + strand, within EX28DRAFT_4400at 63.588 kb on + strand, within EX28DRAFT_4400at 63.589 kb on - strand, within EX28DRAFT_4400at 63.591 kb on + strand, within EX28DRAFT_4400at 63.592 kb on - strand, within EX28DRAFT_4400at 63.600 kb on + strand, within EX28DRAFT_4400at 63.656 kb on + strand, within EX28DRAFT_4400at 63.657 kb on - strand, within EX28DRAFT_4400at 63.657 kb on - strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.745 kb on - strand, within EX28DRAFT_4400at 63.778 kb on + strand, within EX28DRAFT_4400at 63.893 kb on + strandat 63.948 kb on - strandat 63.948 kb on - strandat 63.988 kb on - strandat 63.988 kb on - strandat 64.152 kb on + strandat 64.152 kb on + strandat 64.153 kb on - strandat 64.153 kb on - strandat 64.154 kb on + strandat 64.155 kb on - strandat 64.155 kb on - strandat 64.243 kb on + strandat 64.243 kb on + strandat 64.244 kb on - strandat 64.244 kb on - strandat 64.244 kb on - strandat 64.255 kb on + strandat 64.256 kb on - strandat 64.257 kb on + strandat 64.257 kb on + strandat 64.257 kb on + strandat 64.257 kb on + strandat 64.258 kb on - strandat 64.258 kb on - strandat 64.273 kb on - strandat 64.273 kb on - strandat 64.306 kb on + strandat 64.306 kb on + strandat 64.307 kb on - strandat 64.307 kb on - strandat 64.320 kb on + strandat 64.321 kb on - strandat 64.537 kb on + strandat 64.567 kb on + strandat 64.567 kb on + strandat 64.578 kb on + strandat 64.578 kb on + strandat 64.579 kb on - strandat 64.637 kb on + strandat 64.638 kb on - strandat 64.688 kb on + strand, within EX28DRAFT_4402at 64.688 kb on + strand, within EX28DRAFT_4402at 64.689 kb on - strand, within EX28DRAFT_4402at 64.903 kb on + strand, within EX28DRAFT_4402at 64.903 kb on + strand, within EX28DRAFT_4402at 64.904 kb on - strand, within EX28DRAFT_4402

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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62,145 + EX28DRAFT_4399 0.40 -1.0
62,233 + EX28DRAFT_4399 0.46 -1.0
62,233 + EX28DRAFT_4399 0.46 -0.5
62,250 + EX28DRAFT_4399 0.47 +1.0
62,250 + EX28DRAFT_4399 0.47 -0.8
62,250 + EX28DRAFT_4399 0.47 +0.2
62,251 - EX28DRAFT_4399 0.47 -1.5
62,363 - EX28DRAFT_4399 0.55 -2.0
62,497 - EX28DRAFT_4399 0.64 -0.3
62,578 + EX28DRAFT_4399 0.69 -1.2
62,600 + EX28DRAFT_4399 0.70 +0.9
62,640 + EX28DRAFT_4399 0.73 -0.0
62,677 - EX28DRAFT_4399 0.75 +0.4
62,677 - EX28DRAFT_4399 0.75 +1.1
62,751 + EX28DRAFT_4399 0.80 +0.1
62,752 - EX28DRAFT_4399 0.80 -0.5
62,755 + EX28DRAFT_4399 0.81 -0.8
62,755 + EX28DRAFT_4399 0.81 -1.0
63,049 + +0.2
63,049 + -0.7
63,049 + +0.1
63,049 + -0.3
63,050 - -0.2
63,050 - -0.5
63,050 - +0.1
63,138 - -0.6
63,152 + +1.4
63,153 - EX28DRAFT_4400 0.10 -0.1
63,166 + EX28DRAFT_4400 0.12 +0.6
63,166 + EX28DRAFT_4400 0.12 +0.7
63,166 + EX28DRAFT_4400 0.12 +0.3
63,167 - EX28DRAFT_4400 0.12 -0.6
63,219 + EX28DRAFT_4400 0.18 +0.2
63,553 + EX28DRAFT_4400 0.57 +2.1
63,553 + EX28DRAFT_4400 0.57 -0.0
63,587 - EX28DRAFT_4400 0.61 +0.3
63,588 + EX28DRAFT_4400 0.61 -0.0
63,588 + EX28DRAFT_4400 0.61 +0.1
63,589 - EX28DRAFT_4400 0.62 -0.1
63,591 + EX28DRAFT_4400 0.62 -0.7
63,592 - EX28DRAFT_4400 0.62 +0.3
63,600 + EX28DRAFT_4400 0.63 +0.9
63,656 + EX28DRAFT_4400 0.70 +3.3
63,657 - EX28DRAFT_4400 0.70 +0.9
63,657 - EX28DRAFT_4400 0.70 +0.6
63,744 + EX28DRAFT_4400 0.80 +0.8
63,744 + EX28DRAFT_4400 0.80 +0.5
63,744 + EX28DRAFT_4400 0.80 -0.2
63,745 - EX28DRAFT_4400 0.80 -0.3
63,778 + EX28DRAFT_4400 0.84 -0.2
63,893 + -0.3
63,948 - +0.2
63,948 - +0.9
63,988 - -0.1
63,988 - +1.0
64,152 + -0.1
64,152 + +0.1
64,153 - -1.2
64,153 - +2.9
64,154 + +0.6
64,155 - +0.0
64,155 - +0.1
64,243 + +1.4
64,243 + +0.6
64,244 - -0.0
64,244 - -0.5
64,244 - +0.5
64,255 + +0.5
64,256 - +0.2
64,257 + +2.3
64,257 + +1.0
64,257 + +0.3
64,257 + -0.9
64,258 - +0.9
64,258 - -0.1
64,273 - -0.4
64,273 - +0.9
64,306 + +0.7
64,306 + -0.5
64,307 - -0.3
64,307 - +1.8
64,320 + +0.3
64,321 - +0.2
64,537 + +0.1
64,567 + -0.4
64,567 + -0.0
64,578 + +0.4
64,578 + +0.5
64,579 - -0.1
64,637 + -0.3
64,638 - -0.8
64,688 + EX28DRAFT_4402 0.11 -0.3
64,688 + EX28DRAFT_4402 0.11 +0.5
64,689 - EX28DRAFT_4402 0.11 +0.3
64,903 + EX28DRAFT_4402 0.55 +0.1
64,903 + EX28DRAFT_4402 0.55 +1.0
64,904 - EX28DRAFT_4402 0.55 +0.2

Or see this region's nucleotide sequence