Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4339

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4337 and EX28DRAFT_4338 overlap by 4 nucleotidesEX28DRAFT_4338 and EX28DRAFT_4339 are separated by 68 nucleotidesEX28DRAFT_4339 and EX28DRAFT_4340 are separated by 75 nucleotides EX28DRAFT_4337: EX28DRAFT_4337 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 389 to 892 _4337 EX28DRAFT_4338: EX28DRAFT_4338 - molybdenum cofactor guanylyltransferase, proteobacterial, at 889 to 1,473 _4338 EX28DRAFT_4339: EX28DRAFT_4339 - Uncharacterized protein conserved in bacteria, at 1,542 to 1,811 _4339 EX28DRAFT_4340: EX28DRAFT_4340 - Putative homoserine kinase type II (protein kinase fold), at 1,887 to 2,873 _4340 Position (kb) 1 2Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.577 kb on + strand, within EX28DRAFT_4337at 0.578 kb on - strand, within EX28DRAFT_4337at 0.691 kb on + strand, within EX28DRAFT_4337at 0.692 kb on - strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.739 kb on + strand, within EX28DRAFT_4337at 0.740 kb on - strand, within EX28DRAFT_4337at 0.740 kb on - strand, within EX28DRAFT_4337at 0.740 kb on - strand, within EX28DRAFT_4337at 0.740 kb on - strand, within EX28DRAFT_4337at 0.766 kb on + strand, within EX28DRAFT_4337at 0.766 kb on + strand, within EX28DRAFT_4337at 0.767 kb on - strand, within EX28DRAFT_4337at 0.767 kb on - strand, within EX28DRAFT_4337at 0.769 kb on + strand, within EX28DRAFT_4337at 0.770 kb on - strand, within EX28DRAFT_4337at 0.770 kb on - strand, within EX28DRAFT_4337at 0.784 kb on + strand, within EX28DRAFT_4337at 0.835 kb on + strand, within EX28DRAFT_4337at 0.887 kb on + strandat 1.029 kb on - strand, within EX28DRAFT_4338at 1.029 kb on - strand, within EX28DRAFT_4338at 1.100 kb on - strand, within EX28DRAFT_4338at 1.216 kb on + strand, within EX28DRAFT_4338at 1.293 kb on - strand, within EX28DRAFT_4338at 1.293 kb on - strand, within EX28DRAFT_4338at 1.350 kb on + strand, within EX28DRAFT_4338at 1.351 kb on - strand, within EX28DRAFT_4338at 1.477 kb on + strandat 1.489 kb on + strandat 1.490 kb on - strandat 1.509 kb on + strandat 1.522 kb on + strandat 1.550 kb on + strandat 1.695 kb on + strand, within EX28DRAFT_4339at 1.695 kb on + strand, within EX28DRAFT_4339at 1.695 kb on + strand, within EX28DRAFT_4339at 1.704 kb on - strand, within EX28DRAFT_4339at 1.704 kb on - strand, within EX28DRAFT_4339at 1.743 kb on - strand, within EX28DRAFT_4339at 1.769 kb on + strand, within EX28DRAFT_4339at 1.798 kb on + strandat 1.799 kb on - strandat 1.809 kb on + strandat 1.809 kb on + strandat 1.867 kb on + strandat 1.867 kb on + strandat 1.918 kb on + strandat 1.919 kb on - strandat 2.055 kb on + strand, within EX28DRAFT_4340at 2.157 kb on - strand, within EX28DRAFT_4340at 2.157 kb on - strand, within EX28DRAFT_4340at 2.191 kb on - strand, within EX28DRAFT_4340at 2.191 kb on - strand, within EX28DRAFT_4340at 2.193 kb on + strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.194 kb on - strand, within EX28DRAFT_4340at 2.241 kb on - strand, within EX28DRAFT_4340at 2.281 kb on + strand, within EX28DRAFT_4340at 2.281 kb on + strand, within EX28DRAFT_4340at 2.282 kb on - strand, within EX28DRAFT_4340at 2.340 kb on + strand, within EX28DRAFT_4340at 2.362 kb on + strand, within EX28DRAFT_4340at 2.640 kb on + strand, within EX28DRAFT_4340at 2.641 kb on - strand, within EX28DRAFT_4340at 2.660 kb on + strand, within EX28DRAFT_4340at 2.660 kb on + strand, within EX28DRAFT_4340at 2.712 kb on + strand, within EX28DRAFT_4340at 2.716 kb on - strand, within EX28DRAFT_4340at 2.716 kb on - strand, within EX28DRAFT_4340at 2.806 kb on + strandat 2.806 kb on + strandat 2.810 kb on + strandat 2.810 kb on + strandat 2.811 kb on - strandat 2.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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577 + EX28DRAFT_4337 0.37 +0.5
578 - EX28DRAFT_4337 0.38 -0.1
691 + EX28DRAFT_4337 0.60 +0.1
692 - EX28DRAFT_4337 0.60 -0.5
735 + EX28DRAFT_4337 0.69 -0.3
735 + EX28DRAFT_4337 0.69 +0.3
735 + EX28DRAFT_4337 0.69 -0.2
735 + EX28DRAFT_4337 0.69 +0.1
735 + EX28DRAFT_4337 0.69 -0.0
736 - EX28DRAFT_4337 0.69 +0.1
736 - EX28DRAFT_4337 0.69 +0.2
736 - EX28DRAFT_4337 0.69 +0.3
736 - EX28DRAFT_4337 0.69 +1.0
736 - EX28DRAFT_4337 0.69 +0.1
739 + EX28DRAFT_4337 0.69 +1.1
740 - EX28DRAFT_4337 0.70 +0.0
740 - EX28DRAFT_4337 0.70 +1.0
740 - EX28DRAFT_4337 0.70 +0.8
740 - EX28DRAFT_4337 0.70 +0.7
766 + EX28DRAFT_4337 0.75 -0.6
766 + EX28DRAFT_4337 0.75 +0.1
767 - EX28DRAFT_4337 0.75 +0.4
767 - EX28DRAFT_4337 0.75 +0.1
769 + EX28DRAFT_4337 0.75 -0.5
770 - EX28DRAFT_4337 0.76 +1.0
770 - EX28DRAFT_4337 0.76 -0.9
784 + EX28DRAFT_4337 0.78 -0.1
835 + EX28DRAFT_4337 0.88 -0.0
887 + -0.6
1,029 - EX28DRAFT_4338 0.24 -1.0
1,029 - EX28DRAFT_4338 0.24 -0.3
1,100 - EX28DRAFT_4338 0.36 -0.1
1,216 + EX28DRAFT_4338 0.56 +0.9
1,293 - EX28DRAFT_4338 0.69 -0.5
1,293 - EX28DRAFT_4338 0.69 +0.2
1,350 + EX28DRAFT_4338 0.79 +0.5
1,351 - EX28DRAFT_4338 0.79 -0.2
1,477 + -0.3
1,489 + -0.7
1,490 - +0.3
1,509 + -0.5
1,522 + +0.0
1,550 + +0.0
1,695 + EX28DRAFT_4339 0.57 -0.5
1,695 + EX28DRAFT_4339 0.57 -0.2
1,695 + EX28DRAFT_4339 0.57 -0.4
1,704 - EX28DRAFT_4339 0.60 -0.1
1,704 - EX28DRAFT_4339 0.60 -1.8
1,743 - EX28DRAFT_4339 0.74 -0.3
1,769 + EX28DRAFT_4339 0.84 +1.5
1,798 + +1.0
1,799 - +0.4
1,809 + +1.2
1,809 + -0.3
1,867 + +1.6
1,867 + -0.0
1,918 + -1.0
1,919 - +0.2
2,055 + EX28DRAFT_4340 0.17 -0.2
2,157 - EX28DRAFT_4340 0.27 +0.1
2,157 - EX28DRAFT_4340 0.27 -0.2
2,191 - EX28DRAFT_4340 0.31 -0.0
2,191 - EX28DRAFT_4340 0.31 -0.3
2,193 + EX28DRAFT_4340 0.31 +0.4
2,194 - EX28DRAFT_4340 0.31 -0.0
2,194 - EX28DRAFT_4340 0.31 +0.2
2,194 - EX28DRAFT_4340 0.31 -0.1
2,194 - EX28DRAFT_4340 0.31 +0.0
2,241 - EX28DRAFT_4340 0.36 +0.0
2,281 + EX28DRAFT_4340 0.40 +3.0
2,281 + EX28DRAFT_4340 0.40 -0.3
2,282 - EX28DRAFT_4340 0.40 -0.6
2,340 + EX28DRAFT_4340 0.46 -0.6
2,362 + EX28DRAFT_4340 0.48 +0.5
2,640 + EX28DRAFT_4340 0.76 +0.5
2,641 - EX28DRAFT_4340 0.76 -0.2
2,660 + EX28DRAFT_4340 0.78 +0.0
2,660 + EX28DRAFT_4340 0.78 -0.3
2,712 + EX28DRAFT_4340 0.84 +0.1
2,716 - EX28DRAFT_4340 0.84 -0.0
2,716 - EX28DRAFT_4340 0.84 +1.0
2,806 + -2.2
2,806 + +0.1
2,810 + +0.6
2,810 + +0.3
2,811 - +0.4
2,811 - -0.3

Or see this region's nucleotide sequence