Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4117

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4116 and EX28DRAFT_4117 are separated by 17 nucleotidesEX28DRAFT_4117 and EX28DRAFT_4118 overlap by 1 nucleotides EX28DRAFT_4116: EX28DRAFT_4116 - glycogen debranching enzyme GlgX, at 88,343 to 90,316 _4116 EX28DRAFT_4117: EX28DRAFT_4117 - glucose-1-phosphate adenylyltransferase, at 90,334 to 91,629 _4117 EX28DRAFT_4118: EX28DRAFT_4118 - glycogen/starch synthase, ADP-glucose type, at 91,629 to 93,062 _4118 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2 3at 89.446 kb on + strand, within EX28DRAFT_4116at 89.446 kb on + strand, within EX28DRAFT_4116at 89.446 kb on + strand, within EX28DRAFT_4116at 89.618 kb on - strand, within EX28DRAFT_4116at 89.750 kb on - strand, within EX28DRAFT_4116at 89.755 kb on + strand, within EX28DRAFT_4116at 89.761 kb on + strand, within EX28DRAFT_4116at 89.761 kb on + strand, within EX28DRAFT_4116at 89.762 kb on - strand, within EX28DRAFT_4116at 89.762 kb on - strand, within EX28DRAFT_4116at 89.778 kb on + strand, within EX28DRAFT_4116at 89.779 kb on - strand, within EX28DRAFT_4116at 89.779 kb on - strand, within EX28DRAFT_4116at 89.854 kb on - strand, within EX28DRAFT_4116at 89.915 kb on - strand, within EX28DRAFT_4116at 89.927 kb on + strand, within EX28DRAFT_4116at 89.928 kb on - strand, within EX28DRAFT_4116at 89.928 kb on - strand, within EX28DRAFT_4116at 89.993 kb on - strand, within EX28DRAFT_4116at 90.264 kb on + strandat 90.265 kb on - strandat 90.329 kb on + strandat 90.330 kb on - strandat 90.340 kb on - strandat 90.345 kb on - strandat 90.386 kb on + strandat 90.480 kb on + strand, within EX28DRAFT_4117at 90.567 kb on + strand, within EX28DRAFT_4117at 90.567 kb on + strand, within EX28DRAFT_4117at 90.568 kb on - strand, within EX28DRAFT_4117at 90.737 kb on - strand, within EX28DRAFT_4117at 90.762 kb on + strand, within EX28DRAFT_4117at 90.762 kb on + strand, within EX28DRAFT_4117at 90.763 kb on - strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.778 kb on + strand, within EX28DRAFT_4117at 90.979 kb on + strand, within EX28DRAFT_4117at 90.979 kb on + strand, within EX28DRAFT_4117at 90.980 kb on - strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.998 kb on - strand, within EX28DRAFT_4117at 91.004 kb on - strand, within EX28DRAFT_4117at 91.096 kb on + strand, within EX28DRAFT_4117at 91.227 kb on + strand, within EX28DRAFT_4117at 91.227 kb on + strand, within EX28DRAFT_4117at 91.231 kb on + strand, within EX28DRAFT_4117at 91.231 kb on + strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.351 kb on - strand, within EX28DRAFT_4117at 91.413 kb on + strand, within EX28DRAFT_4117at 91.413 kb on + strand, within EX28DRAFT_4117at 91.414 kb on - strand, within EX28DRAFT_4117at 91.580 kb on + strandat 91.639 kb on + strandat 91.639 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.645 kb on + strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.646 kb on - strandat 91.848 kb on + strand, within EX28DRAFT_4118at 91.848 kb on + strand, within EX28DRAFT_4118at 91.848 kb on + strand, within EX28DRAFT_4118at 91.848 kb on + strand, within EX28DRAFT_4118at 91.849 kb on - strand, within EX28DRAFT_4118at 91.849 kb on - strand, within EX28DRAFT_4118at 91.849 kb on - strand, within EX28DRAFT_4118at 91.888 kb on + strand, within EX28DRAFT_4118at 91.888 kb on + strand, within EX28DRAFT_4118at 91.889 kb on - strand, within EX28DRAFT_4118at 91.890 kb on + strand, within EX28DRAFT_4118at 91.919 kb on + strand, within EX28DRAFT_4118at 91.936 kb on - strand, within EX28DRAFT_4118at 92.111 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.133 kb on + strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.134 kb on - strand, within EX28DRAFT_4118at 92.136 kb on + strand, within EX28DRAFT_4118at 92.137 kb on - strand, within EX28DRAFT_4118at 92.137 kb on - strand, within EX28DRAFT_4118at 92.179 kb on - strand, within EX28DRAFT_4118at 92.180 kb on + strand, within EX28DRAFT_4118at 92.239 kb on - strand, within EX28DRAFT_4118at 92.249 kb on + strand, within EX28DRAFT_4118at 92.249 kb on + strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.250 kb on - strand, within EX28DRAFT_4118at 92.272 kb on - strand, within EX28DRAFT_4118at 92.578 kb on + strand, within EX28DRAFT_4118

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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89,446 + EX28DRAFT_4116 0.56 +0.5
89,446 + EX28DRAFT_4116 0.56 +0.3
89,446 + EX28DRAFT_4116 0.56 +0.1
89,618 - EX28DRAFT_4116 0.65 +1.0
89,750 - EX28DRAFT_4116 0.71 +1.3
89,755 + EX28DRAFT_4116 0.72 -0.0
89,761 + EX28DRAFT_4116 0.72 -0.5
89,761 + EX28DRAFT_4116 0.72 +0.5
89,762 - EX28DRAFT_4116 0.72 -0.1
89,762 - EX28DRAFT_4116 0.72 -0.3
89,778 + EX28DRAFT_4116 0.73 -0.2
89,779 - EX28DRAFT_4116 0.73 +0.9
89,779 - EX28DRAFT_4116 0.73 -0.7
89,854 - EX28DRAFT_4116 0.77 +1.0
89,915 - EX28DRAFT_4116 0.80 -0.6
89,927 + EX28DRAFT_4116 0.80 +1.1
89,928 - EX28DRAFT_4116 0.80 -0.4
89,928 - EX28DRAFT_4116 0.80 -0.5
89,993 - EX28DRAFT_4116 0.84 +0.5
90,264 + -0.1
90,265 - -0.1
90,329 + +0.3
90,330 - +0.6
90,340 - +0.3
90,345 - -2.1
90,386 + +0.8
90,480 + EX28DRAFT_4117 0.11 +0.1
90,567 + EX28DRAFT_4117 0.18 -0.3
90,567 + EX28DRAFT_4117 0.18 +1.1
90,568 - EX28DRAFT_4117 0.18 +0.4
90,737 - EX28DRAFT_4117 0.31 +0.0
90,762 + EX28DRAFT_4117 0.33 +0.3
90,762 + EX28DRAFT_4117 0.33 +0.3
90,763 - EX28DRAFT_4117 0.33 -0.0
90,766 + EX28DRAFT_4117 0.33 -0.5
90,766 + EX28DRAFT_4117 0.33 +0.2
90,766 + EX28DRAFT_4117 0.33 +0.7
90,766 + EX28DRAFT_4117 0.33 -0.0
90,766 + EX28DRAFT_4117 0.33 +1.1
90,766 + EX28DRAFT_4117 0.33 +0.8
90,767 - EX28DRAFT_4117 0.33 +2.2
90,767 - EX28DRAFT_4117 0.33 +1.2
90,767 - EX28DRAFT_4117 0.33 +0.5
90,767 - EX28DRAFT_4117 0.33 +0.3
90,767 - EX28DRAFT_4117 0.33 +0.2
90,767 - EX28DRAFT_4117 0.33 +0.9
90,778 + EX28DRAFT_4117 0.34 +0.3
90,979 + EX28DRAFT_4117 0.50 +0.4
90,979 + EX28DRAFT_4117 0.50 -0.0
90,980 - EX28DRAFT_4117 0.50 -1.1
90,997 + EX28DRAFT_4117 0.51 -1.0
90,997 + EX28DRAFT_4117 0.51 +0.2
90,997 + EX28DRAFT_4117 0.51 +0.5
90,998 - EX28DRAFT_4117 0.51 +0.6
91,004 - EX28DRAFT_4117 0.52 -0.3
91,096 + EX28DRAFT_4117 0.59 +0.7
91,227 + EX28DRAFT_4117 0.69 -0.3
91,227 + EX28DRAFT_4117 0.69 +1.9
91,231 + EX28DRAFT_4117 0.69 +1.2
91,231 + EX28DRAFT_4117 0.69 -1.4
91,232 - EX28DRAFT_4117 0.69 -1.4
91,232 - EX28DRAFT_4117 0.69 +0.4
91,232 - EX28DRAFT_4117 0.69 +1.6
91,232 - EX28DRAFT_4117 0.69 +0.8
91,351 - EX28DRAFT_4117 0.78 +0.4
91,413 + EX28DRAFT_4117 0.83 +0.5
91,413 + EX28DRAFT_4117 0.83 -1.1
91,414 - EX28DRAFT_4117 0.83 -0.4
91,580 + -2.2
91,639 + +0.2
91,639 + +0.9
91,645 + +0.4
91,645 + +0.8
91,645 + +1.7
91,645 + -0.3
91,645 + +0.4
91,645 + +1.9
91,645 + +0.4
91,646 - +1.2
91,646 - +0.1
91,646 - -1.1
91,646 - +0.1
91,646 - +0.2
91,646 - -0.2
91,646 - +1.3
91,848 + EX28DRAFT_4118 0.15 +0.5
91,848 + EX28DRAFT_4118 0.15 -0.0
91,848 + EX28DRAFT_4118 0.15 +0.4
91,848 + EX28DRAFT_4118 0.15 +0.5
91,849 - EX28DRAFT_4118 0.15 +0.0
91,849 - EX28DRAFT_4118 0.15 +0.2
91,849 - EX28DRAFT_4118 0.15 +3.2
91,888 + EX28DRAFT_4118 0.18 +0.6
91,888 + EX28DRAFT_4118 0.18 +0.6
91,889 - EX28DRAFT_4118 0.18 -1.7
91,890 + EX28DRAFT_4118 0.18 +0.2
91,919 + EX28DRAFT_4118 0.20 -0.4
91,936 - EX28DRAFT_4118 0.21 -1.4
92,111 + EX28DRAFT_4118 0.34 +0.6
92,133 + EX28DRAFT_4118 0.35 -1.2
92,133 + EX28DRAFT_4118 0.35 +0.4
92,133 + EX28DRAFT_4118 0.35 -0.2
92,133 + EX28DRAFT_4118 0.35 +1.1
92,134 - EX28DRAFT_4118 0.35 +0.2
92,134 - EX28DRAFT_4118 0.35 -2.0
92,134 - EX28DRAFT_4118 0.35 +0.6
92,134 - EX28DRAFT_4118 0.35 +0.3
92,134 - EX28DRAFT_4118 0.35 +0.4
92,134 - EX28DRAFT_4118 0.35 +0.4
92,134 - EX28DRAFT_4118 0.35 +0.8
92,134 - EX28DRAFT_4118 0.35 +0.1
92,136 + EX28DRAFT_4118 0.35 +0.3
92,137 - EX28DRAFT_4118 0.35 +0.8
92,137 - EX28DRAFT_4118 0.35 +0.4
92,179 - EX28DRAFT_4118 0.38 -0.0
92,180 + EX28DRAFT_4118 0.38 -0.3
92,239 - EX28DRAFT_4118 0.43 -0.5
92,249 + EX28DRAFT_4118 0.43 +1.0
92,249 + EX28DRAFT_4118 0.43 -0.4
92,250 - EX28DRAFT_4118 0.43 -1.6
92,250 - EX28DRAFT_4118 0.43 -0.3
92,250 - EX28DRAFT_4118 0.43 +0.4
92,250 - EX28DRAFT_4118 0.43 +1.1
92,272 - EX28DRAFT_4118 0.45 +0.9
92,578 + EX28DRAFT_4118 0.66 +0.5

Or see this region's nucleotide sequence