Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4096 and EX28DRAFT_4097 overlap by 4 nucleotides EX28DRAFT_4097 and EX28DRAFT_4098 are separated by 3 nucleotides EX28DRAFT_4098 and EX28DRAFT_4099 overlap by 10 nucleotides EX28DRAFT_4099 and EX28DRAFT_4100 overlap by 14 nucleotides
EX28DRAFT_4095: EX28DRAFT_4095 - Predicted exporter, at 68,545 to 70,869
_4095
EX28DRAFT_4096: EX28DRAFT_4096 - Outer membrane lipoprotein-sorting protein, at 70,838 to 71,443
_4096
EX28DRAFT_4097: EX28DRAFT_4097 - Predicted thioesterase, at 71,440 to 71,862
_4097
EX28DRAFT_4098: EX28DRAFT_4098 - Predicted acyltransferase, at 71,866 to 73,557
_4098
EX28DRAFT_4099: EX28DRAFT_4099 - 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases, at 73,548 to 73,901
_4099
EX28DRAFT_4100: EX28DRAFT_4100 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 73,888 to 75,249
_4100
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -1
0
1 at 70.959 kb on + strand, within EX28DRAFT_4096 at 70.960 kb on - strand, within EX28DRAFT_4096 at 71.056 kb on + strand, within EX28DRAFT_4096 at 71.147 kb on - strand, within EX28DRAFT_4096 at 71.471 kb on - strand at 71.513 kb on - strand, within EX28DRAFT_4097 at 71.628 kb on + strand, within EX28DRAFT_4097 at 71.629 kb on - strand, within EX28DRAFT_4097 at 71.629 kb on - strand, within EX28DRAFT_4097 at 71.762 kb on + strand, within EX28DRAFT_4097 at 71.771 kb on + strand, within EX28DRAFT_4097 at 71.771 kb on + strand, within EX28DRAFT_4097 at 71.771 kb on + strand, within EX28DRAFT_4097 at 71.772 kb on - strand, within EX28DRAFT_4097 at 71.799 kb on + strand, within EX28DRAFT_4097 at 71.868 kb on - strand at 71.943 kb on - strand at 71.943 kb on - strand at 72.379 kb on - strand, within EX28DRAFT_4098 at 72.695 kb on + strand, within EX28DRAFT_4098 at 72.900 kb on + strand, within EX28DRAFT_4098 at 72.908 kb on - strand, within EX28DRAFT_4098 at 73.188 kb on - strand, within EX28DRAFT_4098 at 73.188 kb on - strand, within EX28DRAFT_4098 at 73.252 kb on - strand, within EX28DRAFT_4098 at 73.302 kb on - strand, within EX28DRAFT_4098 at 73.382 kb on - strand, within EX28DRAFT_4098 at 73.558 kb on - strand at 73.558 kb on - strand at 73.613 kb on - strand, within EX28DRAFT_4099 at 73.751 kb on - strand, within EX28DRAFT_4099 at 73.751 kb on - strand, within EX28DRAFT_4099 at 73.906 kb on + strand at 73.907 kb on - strand at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.055 kb on + strand, within EX28DRAFT_4100 at 74.056 kb on - strand, within EX28DRAFT_4100
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 70,959 + EX28DRAFT_4096 0.20 -0.1 70,960 - EX28DRAFT_4096 0.20 -0.1 71,056 + EX28DRAFT_4096 0.36 +0.2 71,147 - EX28DRAFT_4096 0.51 +0.8 71,471 - +0.6 71,513 - EX28DRAFT_4097 0.17 +0.9 71,628 + EX28DRAFT_4097 0.44 -0.2 71,629 - EX28DRAFT_4097 0.45 +0.1 71,629 - EX28DRAFT_4097 0.45 +0.7 71,762 + EX28DRAFT_4097 0.76 -0.1 71,771 + EX28DRAFT_4097 0.78 -0.5 71,771 + EX28DRAFT_4097 0.78 -0.3 71,771 + EX28DRAFT_4097 0.78 -0.4 71,772 - EX28DRAFT_4097 0.78 -0.0 71,799 + EX28DRAFT_4097 0.85 +0.5 71,868 - -0.5 71,943 - +0.9 71,943 - -0.7 72,379 - EX28DRAFT_4098 0.30 +1.4 72,695 + EX28DRAFT_4098 0.49 -0.2 72,900 + EX28DRAFT_4098 0.61 +0.7 72,908 - EX28DRAFT_4098 0.62 +0.4 73,188 - EX28DRAFT_4098 0.78 +0.3 73,188 - EX28DRAFT_4098 0.78 +0.4 73,252 - EX28DRAFT_4098 0.82 +0.2 73,302 - EX28DRAFT_4098 0.85 -0.3 73,382 - EX28DRAFT_4098 0.90 -0.7 73,558 - -0.3 73,558 - -0.3 73,613 - EX28DRAFT_4099 0.18 +0.4 73,751 - EX28DRAFT_4099 0.57 -1.4 73,751 - EX28DRAFT_4099 0.57 +0.5 73,906 + -0.1 73,907 - -0.2 74,055 + EX28DRAFT_4100 0.12 +1.1 74,055 + EX28DRAFT_4100 0.12 +0.7 74,055 + EX28DRAFT_4100 0.12 +0.0 74,055 + EX28DRAFT_4100 0.12 +0.5 74,055 + EX28DRAFT_4100 0.12 +0.3 74,055 + EX28DRAFT_4100 0.12 +0.2 74,055 + EX28DRAFT_4100 0.12 +0.1 74,055 + EX28DRAFT_4100 0.12 -0.6 74,056 - EX28DRAFT_4100 0.12 +0.0
Or see this region's nucleotide sequence