Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3813 and EX28DRAFT_3814 are separated by 118 nucleotides EX28DRAFT_3814 and EX28DRAFT_3815 are separated by 3 nucleotides EX28DRAFT_3815 and EX28DRAFT_3816 are separated by 128 nucleotides
EX28DRAFT_3813: EX28DRAFT_3813 - Transcriptional regulators, at 17,648 to 18,664
_3813
EX28DRAFT_3814: EX28DRAFT_3814 - hypothetical protein, at 18,783 to 19,517
_3814
EX28DRAFT_3815: EX28DRAFT_3815 - Sugar kinases, ribokinase family, at 19,521 to 20,459
_3815
EX28DRAFT_3816: EX28DRAFT_3816 - Sugar phosphate permease, at 20,588 to 21,868
_3816
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1
2 at 18.687 kb on + strand at 18.688 kb on - strand at 18.734 kb on + strand at 18.734 kb on + strand at 18.738 kb on - strand at 18.741 kb on - strand at 18.746 kb on + strand at 18.746 kb on + strand at 18.747 kb on - strand at 18.747 kb on - strand at 18.783 kb on - strand at 18.973 kb on - strand, within EX28DRAFT_3814 at 18.996 kb on - strand, within EX28DRAFT_3814 at 19.121 kb on + strand, within EX28DRAFT_3814 at 19.323 kb on + strand, within EX28DRAFT_3814 at 19.324 kb on - strand, within EX28DRAFT_3814 at 19.324 kb on - strand, within EX28DRAFT_3814 at 19.324 kb on - strand, within EX28DRAFT_3814 at 19.324 kb on - strand, within EX28DRAFT_3814 at 19.324 kb on - strand, within EX28DRAFT_3814 at 19.359 kb on - strand, within EX28DRAFT_3814 at 19.515 kb on + strand at 19.613 kb on + strand at 19.749 kb on - strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.962 kb on + strand, within EX28DRAFT_3815 at 19.963 kb on - strand, within EX28DRAFT_3815 at 20.175 kb on + strand, within EX28DRAFT_3815 at 20.191 kb on + strand, within EX28DRAFT_3815 at 20.200 kb on + strand, within EX28DRAFT_3815 at 20.475 kb on + strand at 20.509 kb on + strand at 20.510 kb on - strand at 20.610 kb on + strand at 20.651 kb on + strand at 20.651 kb on + strand at 20.802 kb on - strand, within EX28DRAFT_3816 at 20.820 kb on + strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.891 kb on - strand, within EX28DRAFT_3816 at 20.891 kb on - strand, within EX28DRAFT_3816 at 20.963 kb on + strand, within EX28DRAFT_3816 at 20.963 kb on + strand, within EX28DRAFT_3816 at 20.964 kb on - strand, within EX28DRAFT_3816 at 20.964 kb on - strand, within EX28DRAFT_3816 at 20.981 kb on - strand, within EX28DRAFT_3816 at 21.007 kb on + strand, within EX28DRAFT_3816 at 21.258 kb on - strand, within EX28DRAFT_3816 at 21.306 kb on - strand, within EX28DRAFT_3816 at 21.306 kb on - strand, within EX28DRAFT_3816 at 21.310 kb on + strand, within EX28DRAFT_3816 at 21.390 kb on + strand, within EX28DRAFT_3816 at 21.420 kb on - strand, within EX28DRAFT_3816
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 18,687 + -0.2 18,688 - +0.3 18,734 + -0.0 18,734 + +0.6 18,738 - +0.7 18,741 - +0.0 18,746 + +0.0 18,746 + -0.3 18,747 - +0.1 18,747 - +0.8 18,783 - -0.4 18,973 - EX28DRAFT_3814 0.26 +0.5 18,996 - EX28DRAFT_3814 0.29 +0.2 19,121 + EX28DRAFT_3814 0.46 -1.3 19,323 + EX28DRAFT_3814 0.73 -0.3 19,324 - EX28DRAFT_3814 0.74 -0.1 19,324 - EX28DRAFT_3814 0.74 -0.8 19,324 - EX28DRAFT_3814 0.74 -0.8 19,324 - EX28DRAFT_3814 0.74 +0.2 19,324 - EX28DRAFT_3814 0.74 -0.2 19,359 - EX28DRAFT_3814 0.78 +1.2 19,515 + -0.1 19,613 + -0.0 19,749 - EX28DRAFT_3815 0.24 -0.5 19,802 + EX28DRAFT_3815 0.30 +1.0 19,802 + EX28DRAFT_3815 0.30 +0.3 19,802 + EX28DRAFT_3815 0.30 +0.1 19,962 + EX28DRAFT_3815 0.47 +0.1 19,963 - EX28DRAFT_3815 0.47 +1.8 20,175 + EX28DRAFT_3815 0.70 +1.0 20,191 + EX28DRAFT_3815 0.71 +0.4 20,200 + EX28DRAFT_3815 0.72 +1.5 20,475 + -0.8 20,509 + -1.1 20,510 - -0.3 20,610 + +0.9 20,651 + +0.0 20,651 + -1.3 20,802 - EX28DRAFT_3816 0.17 +0.0 20,820 + EX28DRAFT_3816 0.18 +0.1 20,825 - EX28DRAFT_3816 0.19 +1.0 20,825 - EX28DRAFT_3816 0.19 -0.2 20,825 - EX28DRAFT_3816 0.19 -0.2 20,891 - EX28DRAFT_3816 0.24 +0.1 20,891 - EX28DRAFT_3816 0.24 +0.3 20,963 + EX28DRAFT_3816 0.29 -0.1 20,963 + EX28DRAFT_3816 0.29 +0.2 20,964 - EX28DRAFT_3816 0.29 -0.0 20,964 - EX28DRAFT_3816 0.29 +0.5 20,981 - EX28DRAFT_3816 0.31 +0.2 21,007 + EX28DRAFT_3816 0.33 -0.5 21,258 - EX28DRAFT_3816 0.52 -0.6 21,306 - EX28DRAFT_3816 0.56 +0.3 21,306 - EX28DRAFT_3816 0.56 -0.4 21,310 + EX28DRAFT_3816 0.56 +2.1 21,390 + EX28DRAFT_3816 0.63 -0.2 21,420 - EX28DRAFT_3816 0.65 -0.4
Or see this region's nucleotide sequence