Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3737

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3735 and EX28DRAFT_3736 overlap by 11 nucleotidesEX28DRAFT_3736 and EX28DRAFT_3737 are separated by 73 nucleotidesEX28DRAFT_3737 and EX28DRAFT_3738 are separated by 155 nucleotides EX28DRAFT_3735: EX28DRAFT_3735 - sugar fermentation stimulation protein, at 409,603 to 410,307 _3735 EX28DRAFT_3736: EX28DRAFT_3736 - 2'-5' RNA ligase, at 410,297 to 410,851 _3736 EX28DRAFT_3737: EX28DRAFT_3737 - ATP-dependent helicase HrpB, at 410,925 to 413,354 _3737 EX28DRAFT_3738: EX28DRAFT_3738 - penicillin-binding protein 1B, at 413,510 to 416,035 _3738 Position (kb) 410 411 412 413 414Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 409.970 kb on + strand, within EX28DRAFT_3735at 409.970 kb on + strand, within EX28DRAFT_3735at 409.986 kb on + strand, within EX28DRAFT_3735at 409.986 kb on + strand, within EX28DRAFT_3735at 410.077 kb on - strand, within EX28DRAFT_3735at 410.077 kb on - strand, within EX28DRAFT_3735at 410.112 kb on + strand, within EX28DRAFT_3735at 410.113 kb on - strand, within EX28DRAFT_3735at 410.120 kb on + strand, within EX28DRAFT_3735at 410.120 kb on + strand, within EX28DRAFT_3735at 410.120 kb on + strand, within EX28DRAFT_3735at 410.133 kb on + strand, within EX28DRAFT_3735at 410.476 kb on + strand, within EX28DRAFT_3736at 410.477 kb on - strand, within EX28DRAFT_3736at 410.872 kb on - strandat 410.872 kb on - strandat 410.884 kb on + strandat 410.892 kb on - strandat 410.907 kb on - strandat 410.974 kb on + strandat 410.975 kb on - strandat 410.975 kb on - strandat 411.203 kb on + strand, within EX28DRAFT_3737at 411.231 kb on - strand, within EX28DRAFT_3737at 411.383 kb on + strand, within EX28DRAFT_3737at 411.383 kb on + strand, within EX28DRAFT_3737at 411.384 kb on - strand, within EX28DRAFT_3737at 411.384 kb on - strand, within EX28DRAFT_3737at 411.386 kb on + strand, within EX28DRAFT_3737at 411.387 kb on - strand, within EX28DRAFT_3737at 411.387 kb on - strand, within EX28DRAFT_3737at 411.387 kb on - strand, within EX28DRAFT_3737at 411.387 kb on - strand, within EX28DRAFT_3737at 411.387 kb on - strand, within EX28DRAFT_3737at 411.387 kb on - strand, within EX28DRAFT_3737at 411.840 kb on - strand, within EX28DRAFT_3737at 411.917 kb on - strand, within EX28DRAFT_3737at 411.917 kb on - strand, within EX28DRAFT_3737at 411.917 kb on - strand, within EX28DRAFT_3737at 412.076 kb on - strand, within EX28DRAFT_3737at 412.355 kb on + strand, within EX28DRAFT_3737at 412.863 kb on + strand, within EX28DRAFT_3737at 412.865 kb on + strand, within EX28DRAFT_3737at 412.865 kb on + strand, within EX28DRAFT_3737at 412.865 kb on + strand, within EX28DRAFT_3737at 412.866 kb on - strand, within EX28DRAFT_3737at 412.866 kb on - strand, within EX28DRAFT_3737at 412.866 kb on - strand, within EX28DRAFT_3737at 412.866 kb on - strand, within EX28DRAFT_3737at 412.866 kb on - strand, within EX28DRAFT_3737at 412.940 kb on - strand, within EX28DRAFT_3737at 412.993 kb on + strand, within EX28DRAFT_3737at 412.993 kb on + strand, within EX28DRAFT_3737at 413.043 kb on + strand, within EX28DRAFT_3737at 413.043 kb on + strand, within EX28DRAFT_3737at 413.043 kb on + strand, within EX28DRAFT_3737at 413.044 kb on - strand, within EX28DRAFT_3737at 413.044 kb on - strand, within EX28DRAFT_3737at 413.044 kb on - strand, within EX28DRAFT_3737at 413.209 kb on + strandat 413.210 kb on - strandat 413.346 kb on + strandat 413.347 kb on - strandat 413.352 kb on + strandat 413.352 kb on + strandat 413.353 kb on - strandat 413.357 kb on + strandat 413.357 kb on + strandat 413.357 kb on + strandat 413.358 kb on - strandat 413.536 kb on - strandat 413.542 kb on + strandat 413.577 kb on + strandat 413.577 kb on + strandat 413.606 kb on + strandat 413.606 kb on + strandat 413.606 kb on + strandat 413.618 kb on + strandat 413.725 kb on + strandat 413.812 kb on - strand, within EX28DRAFT_3738at 413.854 kb on + strand, within EX28DRAFT_3738at 413.854 kb on + strand, within EX28DRAFT_3738at 413.854 kb on + strand, within EX28DRAFT_3738at 413.854 kb on + strand, within EX28DRAFT_3738at 413.855 kb on - strand, within EX28DRAFT_3738at 413.855 kb on - strand, within EX28DRAFT_3738at 414.218 kb on + strand, within EX28DRAFT_3738at 414.243 kb on - strand, within EX28DRAFT_3738

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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409,970 + EX28DRAFT_3735 0.52 +1.1
409,970 + EX28DRAFT_3735 0.52 +0.7
409,986 + EX28DRAFT_3735 0.54 -0.7
409,986 + EX28DRAFT_3735 0.54 +0.3
410,077 - EX28DRAFT_3735 0.67 -0.2
410,077 - EX28DRAFT_3735 0.67 +1.1
410,112 + EX28DRAFT_3735 0.72 -0.2
410,113 - EX28DRAFT_3735 0.72 -0.3
410,120 + EX28DRAFT_3735 0.73 -0.4
410,120 + EX28DRAFT_3735 0.73 +1.3
410,120 + EX28DRAFT_3735 0.73 +0.3
410,133 + EX28DRAFT_3735 0.75 +0.1
410,476 + EX28DRAFT_3736 0.32 -0.0
410,477 - EX28DRAFT_3736 0.32 +0.1
410,872 - -0.0
410,872 - -0.1
410,884 + -0.4
410,892 - -1.3
410,907 - -0.1
410,974 + -0.5
410,975 - -1.9
410,975 - -0.6
411,203 + EX28DRAFT_3737 0.11 +0.7
411,231 - EX28DRAFT_3737 0.13 -0.1
411,383 + EX28DRAFT_3737 0.19 -0.0
411,383 + EX28DRAFT_3737 0.19 -0.9
411,384 - EX28DRAFT_3737 0.19 +0.2
411,384 - EX28DRAFT_3737 0.19 +0.7
411,386 + EX28DRAFT_3737 0.19 +0.8
411,387 - EX28DRAFT_3737 0.19 -0.4
411,387 - EX28DRAFT_3737 0.19 +0.6
411,387 - EX28DRAFT_3737 0.19 +1.0
411,387 - EX28DRAFT_3737 0.19 +0.2
411,387 - EX28DRAFT_3737 0.19 -0.2
411,387 - EX28DRAFT_3737 0.19 -0.2
411,840 - EX28DRAFT_3737 0.38 -0.1
411,917 - EX28DRAFT_3737 0.41 +0.8
411,917 - EX28DRAFT_3737 0.41 -0.5
411,917 - EX28DRAFT_3737 0.41 -0.2
412,076 - EX28DRAFT_3737 0.47 -0.3
412,355 + EX28DRAFT_3737 0.59 +0.0
412,863 + EX28DRAFT_3737 0.80 +1.3
412,865 + EX28DRAFT_3737 0.80 +0.2
412,865 + EX28DRAFT_3737 0.80 -0.4
412,865 + EX28DRAFT_3737 0.80 +0.6
412,866 - EX28DRAFT_3737 0.80 +0.5
412,866 - EX28DRAFT_3737 0.80 -3.9
412,866 - EX28DRAFT_3737 0.80 -0.0
412,866 - EX28DRAFT_3737 0.80 +0.3
412,866 - EX28DRAFT_3737 0.80 -0.4
412,940 - EX28DRAFT_3737 0.83 +0.5
412,993 + EX28DRAFT_3737 0.85 +0.0
412,993 + EX28DRAFT_3737 0.85 +0.5
413,043 + EX28DRAFT_3737 0.87 -0.4
413,043 + EX28DRAFT_3737 0.87 -0.9
413,043 + EX28DRAFT_3737 0.87 +0.7
413,044 - EX28DRAFT_3737 0.87 -0.1
413,044 - EX28DRAFT_3737 0.87 -0.1
413,044 - EX28DRAFT_3737 0.87 -0.3
413,209 + -0.1
413,210 - -0.7
413,346 + +0.2
413,347 - +0.7
413,352 + +0.1
413,352 + +1.1
413,353 - +1.0
413,357 + +1.3
413,357 + -1.4
413,357 + -1.3
413,358 - +0.3
413,536 - +1.0
413,542 + -0.2
413,577 + -1.5
413,577 + -1.4
413,606 + +0.2
413,606 + -0.2
413,606 + +0.3
413,618 + -0.1
413,725 + -1.0
413,812 - EX28DRAFT_3738 0.12 -0.3
413,854 + EX28DRAFT_3738 0.14 +0.9
413,854 + EX28DRAFT_3738 0.14 +1.7
413,854 + EX28DRAFT_3738 0.14 -0.4
413,854 + EX28DRAFT_3738 0.14 +0.7
413,855 - EX28DRAFT_3738 0.14 -0.3
413,855 - EX28DRAFT_3738 0.14 +0.0
414,218 + EX28DRAFT_3738 0.28 +0.4
414,243 - EX28DRAFT_3738 0.29 +1.0

Or see this region's nucleotide sequence