Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3558

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3556 and EX28DRAFT_3557 are separated by 32 nucleotidesEX28DRAFT_3557 and EX28DRAFT_3558 overlap by 4 nucleotidesEX28DRAFT_3558 and EX28DRAFT_3559 are separated by 180 nucleotides EX28DRAFT_3556: EX28DRAFT_3556 - Uncharacterized secreted protein, at 220,637 to 221,131 _3556 EX28DRAFT_3557: EX28DRAFT_3557 - Bacterial regulatory proteins, luxR family, at 221,164 to 221,706 _3557 EX28DRAFT_3558: EX28DRAFT_3558 - EAL domain, at 221,703 to 222,341 _3558 EX28DRAFT_3559: EX28DRAFT_3559 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 222,522 to 224,813 _3559 Position (kb) 221 222 223Strain fitness (log2 ratio) -2 -1 0 1 2 3at 220.720 kb on - strand, within EX28DRAFT_3556at 221.005 kb on + strand, within EX28DRAFT_3556at 221.007 kb on - strand, within EX28DRAFT_3556at 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.108 kb on + strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.109 kb on - strandat 221.137 kb on + strandat 221.137 kb on + strandat 221.165 kb on + strandat 221.264 kb on + strand, within EX28DRAFT_3557at 221.264 kb on + strand, within EX28DRAFT_3557at 221.264 kb on + strand, within EX28DRAFT_3557at 221.264 kb on + strand, within EX28DRAFT_3557at 221.265 kb on - strand, within EX28DRAFT_3557at 221.265 kb on - strand, within EX28DRAFT_3557at 221.265 kb on - strand, within EX28DRAFT_3557at 221.265 kb on - strand, within EX28DRAFT_3557at 221.283 kb on + strand, within EX28DRAFT_3557at 221.283 kb on + strand, within EX28DRAFT_3557at 221.284 kb on - strand, within EX28DRAFT_3557at 221.499 kb on + strand, within EX28DRAFT_3557at 221.499 kb on + strand, within EX28DRAFT_3557at 221.499 kb on + strand, within EX28DRAFT_3557at 221.500 kb on - strand, within EX28DRAFT_3557at 221.503 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.588 kb on + strand, within EX28DRAFT_3557at 221.589 kb on - strand, within EX28DRAFT_3557at 221.652 kb on + strandat 221.652 kb on + strandat 221.653 kb on - strandat 221.873 kb on + strand, within EX28DRAFT_3558at 221.873 kb on + strand, within EX28DRAFT_3558at 221.873 kb on + strand, within EX28DRAFT_3558at 221.874 kb on - strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.958 kb on + strand, within EX28DRAFT_3558at 221.959 kb on - strand, within EX28DRAFT_3558at 221.964 kb on + strand, within EX28DRAFT_3558at 222.039 kb on - strand, within EX28DRAFT_3558at 222.039 kb on - strand, within EX28DRAFT_3558at 222.123 kb on + strand, within EX28DRAFT_3558at 222.145 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.148 kb on + strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.149 kb on - strand, within EX28DRAFT_3558at 222.207 kb on - strand, within EX28DRAFT_3558at 222.236 kb on - strand, within EX28DRAFT_3558at 222.273 kb on + strand, within EX28DRAFT_3558at 222.273 kb on + strand, within EX28DRAFT_3558at 222.273 kb on + strand, within EX28DRAFT_3558at 222.273 kb on + strand, within EX28DRAFT_3558at 222.327 kb on - strandat 222.327 kb on - strandat 222.327 kb on - strandat 222.336 kb on + strandat 222.337 kb on - strandat 222.337 kb on - strandat 222.337 kb on - strandat 222.337 kb on - strandat 222.641 kb on + strandat 222.812 kb on - strand, within EX28DRAFT_3559at 222.992 kb on - strand, within EX28DRAFT_3559at 223.222 kb on + strand, within EX28DRAFT_3559

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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220,720 - EX28DRAFT_3556 0.17 +0.3
221,005 + EX28DRAFT_3556 0.74 +0.6
221,007 - EX28DRAFT_3556 0.75 +0.0
221,108 + -0.1
221,108 + -0.7
221,108 + -0.1
221,108 + -0.4
221,108 + +0.0
221,108 + -0.1
221,108 + +0.1
221,108 + -0.2
221,109 - +1.4
221,109 - -0.1
221,109 - +0.3
221,109 - -0.1
221,109 - -0.6
221,137 + +0.8
221,137 + +0.3
221,165 + -0.8
221,264 + EX28DRAFT_3557 0.18 +0.1
221,264 + EX28DRAFT_3557 0.18 +0.0
221,264 + EX28DRAFT_3557 0.18 -0.3
221,264 + EX28DRAFT_3557 0.18 +0.4
221,265 - EX28DRAFT_3557 0.19 +0.6
221,265 - EX28DRAFT_3557 0.19 +1.1
221,265 - EX28DRAFT_3557 0.19 +0.2
221,265 - EX28DRAFT_3557 0.19 -0.1
221,283 + EX28DRAFT_3557 0.22 -0.4
221,283 + EX28DRAFT_3557 0.22 -1.4
221,284 - EX28DRAFT_3557 0.22 +0.3
221,499 + EX28DRAFT_3557 0.62 +0.3
221,499 + EX28DRAFT_3557 0.62 -0.1
221,499 + EX28DRAFT_3557 0.62 -0.2
221,500 - EX28DRAFT_3557 0.62 -2.2
221,503 + EX28DRAFT_3557 0.62 +0.3
221,588 + EX28DRAFT_3557 0.78 +0.8
221,588 + EX28DRAFT_3557 0.78 -0.4
221,588 + EX28DRAFT_3557 0.78 +0.2
221,588 + EX28DRAFT_3557 0.78 +0.2
221,589 - EX28DRAFT_3557 0.78 +0.2
221,652 + -0.7
221,652 + +0.5
221,653 - -0.3
221,873 + EX28DRAFT_3558 0.27 +0.4
221,873 + EX28DRAFT_3558 0.27 -0.6
221,873 + EX28DRAFT_3558 0.27 -0.5
221,874 - EX28DRAFT_3558 0.27 -2.0
221,958 + EX28DRAFT_3558 0.40 -0.5
221,958 + EX28DRAFT_3558 0.40 +1.0
221,958 + EX28DRAFT_3558 0.40 +0.5
221,959 - EX28DRAFT_3558 0.40 -1.3
221,964 + EX28DRAFT_3558 0.41 +0.3
222,039 - EX28DRAFT_3558 0.53 +0.6
222,039 - EX28DRAFT_3558 0.53 +0.0
222,123 + EX28DRAFT_3558 0.66 -0.6
222,145 + EX28DRAFT_3558 0.69 +1.1
222,148 + EX28DRAFT_3558 0.70 -1.4
222,148 + EX28DRAFT_3558 0.70 +0.8
222,148 + EX28DRAFT_3558 0.70 +0.2
222,148 + EX28DRAFT_3558 0.70 +0.6
222,148 + EX28DRAFT_3558 0.70 +0.2
222,148 + EX28DRAFT_3558 0.70 -1.2
222,149 - EX28DRAFT_3558 0.70 -1.0
222,149 - EX28DRAFT_3558 0.70 +3.2
222,149 - EX28DRAFT_3558 0.70 -1.9
222,149 - EX28DRAFT_3558 0.70 +0.5
222,149 - EX28DRAFT_3558 0.70 -0.2
222,149 - EX28DRAFT_3558 0.70 -0.5
222,149 - EX28DRAFT_3558 0.70 -0.5
222,149 - EX28DRAFT_3558 0.70 +0.8
222,149 - EX28DRAFT_3558 0.70 -0.1
222,207 - EX28DRAFT_3558 0.79 -1.0
222,236 - EX28DRAFT_3558 0.83 +0.2
222,273 + EX28DRAFT_3558 0.89 -2.1
222,273 + EX28DRAFT_3558 0.89 -2.4
222,273 + EX28DRAFT_3558 0.89 -1.2
222,273 + EX28DRAFT_3558 0.89 +0.2
222,327 - -0.6
222,327 - +1.9
222,327 - -0.4
222,336 + +0.4
222,337 - -0.4
222,337 - -0.3
222,337 - +0.0
222,337 - +0.2
222,641 + +0.1
222,812 - EX28DRAFT_3559 0.13 -0.5
222,992 - EX28DRAFT_3559 0.21 +1.0
223,222 + EX28DRAFT_3559 0.31 +0.9

Or see this region's nucleotide sequence