Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2896

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2895 and EX28DRAFT_2896 overlap by 4 nucleotidesEX28DRAFT_2896 and EX28DRAFT_2897 are separated by 140 nucleotides EX28DRAFT_2895: EX28DRAFT_2895 - DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5), at 200,253 to 203,795 _2895 EX28DRAFT_2896: EX28DRAFT_2896 - Secreted/periplasmic Zn-dependent peptidases, insulinase-like, at 203,792 to 206,659 _2896 EX28DRAFT_2897: EX28DRAFT_2897 - DNA helicase/exodeoxyribonuclease V, gamma subunit (EC 3.1.11.5), at 206,800 to 210,174 _2897 Position (kb) 203 204 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 203.758 kb on - strandat 203.763 kb on + strandat 203.764 kb on - strandat 203.815 kb on + strandat 203.816 kb on - strandat 203.816 kb on - strandat 203.871 kb on + strandat 203.932 kb on + strandat 203.933 kb on - strandat 203.997 kb on - strandat 204.251 kb on + strand, within EX28DRAFT_2896at 204.251 kb on + strand, within EX28DRAFT_2896at 204.252 kb on - strand, within EX28DRAFT_2896at 204.252 kb on - strand, within EX28DRAFT_2896at 204.312 kb on + strand, within EX28DRAFT_2896at 204.312 kb on + strand, within EX28DRAFT_2896at 204.313 kb on - strand, within EX28DRAFT_2896at 204.313 kb on - strand, within EX28DRAFT_2896at 204.669 kb on + strand, within EX28DRAFT_2896at 204.670 kb on - strand, within EX28DRAFT_2896at 204.700 kb on + strand, within EX28DRAFT_2896at 204.701 kb on - strand, within EX28DRAFT_2896at 204.754 kb on - strand, within EX28DRAFT_2896at 204.795 kb on + strand, within EX28DRAFT_2896at 204.796 kb on - strand, within EX28DRAFT_2896at 204.847 kb on + strand, within EX28DRAFT_2896at 204.954 kb on + strand, within EX28DRAFT_2896at 205.069 kb on - strand, within EX28DRAFT_2896at 205.069 kb on - strand, within EX28DRAFT_2896at 205.157 kb on - strand, within EX28DRAFT_2896at 205.158 kb on + strand, within EX28DRAFT_2896at 205.158 kb on + strand, within EX28DRAFT_2896at 205.158 kb on + strand, within EX28DRAFT_2896at 205.159 kb on - strand, within EX28DRAFT_2896at 205.159 kb on - strand, within EX28DRAFT_2896at 205.267 kb on - strand, within EX28DRAFT_2896at 205.279 kb on + strand, within EX28DRAFT_2896at 205.302 kb on + strand, within EX28DRAFT_2896at 205.302 kb on + strand, within EX28DRAFT_2896at 205.303 kb on - strand, within EX28DRAFT_2896at 205.378 kb on + strand, within EX28DRAFT_2896at 205.444 kb on - strand, within EX28DRAFT_2896at 205.551 kb on + strand, within EX28DRAFT_2896at 205.669 kb on + strand, within EX28DRAFT_2896at 205.730 kb on + strand, within EX28DRAFT_2896at 205.730 kb on + strand, within EX28DRAFT_2896at 205.731 kb on - strand, within EX28DRAFT_2896at 205.834 kb on - strand, within EX28DRAFT_2896at 205.834 kb on - strand, within EX28DRAFT_2896at 205.834 kb on - strand, within EX28DRAFT_2896at 205.927 kb on + strand, within EX28DRAFT_2896at 205.998 kb on + strand, within EX28DRAFT_2896at 205.998 kb on + strand, within EX28DRAFT_2896at 206.001 kb on + strand, within EX28DRAFT_2896at 206.001 kb on + strand, within EX28DRAFT_2896at 206.002 kb on - strand, within EX28DRAFT_2896at 206.002 kb on - strand, within EX28DRAFT_2896at 206.203 kb on - strand, within EX28DRAFT_2896at 206.203 kb on - strand, within EX28DRAFT_2896at 206.287 kb on - strand, within EX28DRAFT_2896at 206.398 kb on + strandat 206.398 kb on + strandat 206.398 kb on + strandat 206.399 kb on - strandat 206.399 kb on - strandat 206.399 kb on - strandat 206.410 kb on - strandat 206.570 kb on - strandat 206.673 kb on + strandat 206.674 kb on - strandat 206.683 kb on - strandat 206.732 kb on + strandat 206.732 kb on + strandat 206.761 kb on + strandat 206.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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203,758 - +0.4
203,763 + -0.3
203,764 - -0.0
203,815 + +1.2
203,816 - +2.2
203,816 - +0.1
203,871 + -0.8
203,932 + +0.2
203,933 - +0.3
203,997 - +3.2
204,251 + EX28DRAFT_2896 0.16 -0.5
204,251 + EX28DRAFT_2896 0.16 -0.3
204,252 - EX28DRAFT_2896 0.16 +0.8
204,252 - EX28DRAFT_2896 0.16 -0.5
204,312 + EX28DRAFT_2896 0.18 -0.3
204,312 + EX28DRAFT_2896 0.18 +0.4
204,313 - EX28DRAFT_2896 0.18 +1.1
204,313 - EX28DRAFT_2896 0.18 +0.1
204,669 + EX28DRAFT_2896 0.31 -0.2
204,670 - EX28DRAFT_2896 0.31 -0.1
204,700 + EX28DRAFT_2896 0.32 +0.3
204,701 - EX28DRAFT_2896 0.32 -0.3
204,754 - EX28DRAFT_2896 0.34 +0.5
204,795 + EX28DRAFT_2896 0.35 -0.7
204,796 - EX28DRAFT_2896 0.35 +0.1
204,847 + EX28DRAFT_2896 0.37 -1.3
204,954 + EX28DRAFT_2896 0.41 -1.0
205,069 - EX28DRAFT_2896 0.45 -1.9
205,069 - EX28DRAFT_2896 0.45 +0.1
205,157 - EX28DRAFT_2896 0.48 -1.3
205,158 + EX28DRAFT_2896 0.48 -1.9
205,158 + EX28DRAFT_2896 0.48 -0.8
205,158 + EX28DRAFT_2896 0.48 +0.0
205,159 - EX28DRAFT_2896 0.48 -0.0
205,159 - EX28DRAFT_2896 0.48 -0.8
205,267 - EX28DRAFT_2896 0.51 -2.1
205,279 + EX28DRAFT_2896 0.52 -1.5
205,302 + EX28DRAFT_2896 0.53 -0.8
205,302 + EX28DRAFT_2896 0.53 -1.7
205,303 - EX28DRAFT_2896 0.53 +0.5
205,378 + EX28DRAFT_2896 0.55 -1.2
205,444 - EX28DRAFT_2896 0.58 +0.7
205,551 + EX28DRAFT_2896 0.61 -0.3
205,669 + EX28DRAFT_2896 0.65 +0.4
205,730 + EX28DRAFT_2896 0.68 -0.5
205,730 + EX28DRAFT_2896 0.68 -0.7
205,731 - EX28DRAFT_2896 0.68 +0.3
205,834 - EX28DRAFT_2896 0.71 -0.2
205,834 - EX28DRAFT_2896 0.71 +1.3
205,834 - EX28DRAFT_2896 0.71 +0.3
205,927 + EX28DRAFT_2896 0.74 +0.4
205,998 + EX28DRAFT_2896 0.77 +0.7
205,998 + EX28DRAFT_2896 0.77 -1.5
206,001 + EX28DRAFT_2896 0.77 -0.2
206,001 + EX28DRAFT_2896 0.77 -0.0
206,002 - EX28DRAFT_2896 0.77 +1.7
206,002 - EX28DRAFT_2896 0.77 -2.2
206,203 - EX28DRAFT_2896 0.84 +0.1
206,203 - EX28DRAFT_2896 0.84 +0.7
206,287 - EX28DRAFT_2896 0.87 +0.4
206,398 + +0.1
206,398 + +0.1
206,398 + -0.3
206,399 - +1.0
206,399 - +0.2
206,399 - -0.2
206,410 - +0.1
206,570 - -0.0
206,673 + -1.7
206,674 - +0.7
206,683 - -3.7
206,732 + +0.3
206,732 + -0.4
206,761 + -0.2
206,777 - -0.5

Or see this region's nucleotide sequence