Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2876

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2874 and EX28DRAFT_2875 are separated by 218 nucleotidesEX28DRAFT_2875 and EX28DRAFT_2876 are separated by 69 nucleotidesEX28DRAFT_2876 and EX28DRAFT_2877 are separated by 116 nucleotides EX28DRAFT_2874: EX28DRAFT_2874 - RNA, at 180,522 to 180,878 _2874 EX28DRAFT_2875: EX28DRAFT_2875 - Syd protein (SUKH-2), at 181,097 to 181,642 _2875 EX28DRAFT_2876: EX28DRAFT_2876 - 7-cyano-7-deazaguanine reductase, at 181,712 to 182,554 _2876 EX28DRAFT_2877: EX28DRAFT_2877 - Predicted Rossmann fold nucleotide-binding protein, at 182,671 to 184,035 _2877 Position (kb) 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2 3at 180.893 kb on + strandat 180.893 kb on + strandat 180.893 kb on + strandat 180.894 kb on - strandat 180.919 kb on - strandat 180.952 kb on - strandat 180.952 kb on - strandat 181.063 kb on - strandat 181.099 kb on - strandat 181.213 kb on + strand, within EX28DRAFT_2875at 181.264 kb on + strand, within EX28DRAFT_2875at 181.355 kb on - strand, within EX28DRAFT_2875at 181.401 kb on + strand, within EX28DRAFT_2875at 181.495 kb on + strand, within EX28DRAFT_2875at 181.501 kb on - strand, within EX28DRAFT_2875at 181.520 kb on - strand, within EX28DRAFT_2875at 181.535 kb on + strand, within EX28DRAFT_2875at 181.612 kb on + strandat 181.683 kb on + strandat 181.683 kb on + strandat 181.684 kb on - strandat 181.689 kb on + strandat 181.689 kb on + strandat 181.689 kb on + strandat 181.690 kb on - strandat 181.705 kb on - strandat 181.887 kb on - strand, within EX28DRAFT_2876at 181.887 kb on - strand, within EX28DRAFT_2876at 181.887 kb on - strand, within EX28DRAFT_2876at 181.952 kb on + strand, within EX28DRAFT_2876at 181.953 kb on - strand, within EX28DRAFT_2876at 181.987 kb on + strand, within EX28DRAFT_2876at 181.988 kb on - strand, within EX28DRAFT_2876at 182.065 kb on - strand, within EX28DRAFT_2876at 182.187 kb on - strand, within EX28DRAFT_2876at 182.411 kb on - strand, within EX28DRAFT_2876at 182.469 kb on - strand, within EX28DRAFT_2876at 182.555 kb on + strandat 182.558 kb on - strandat 182.561 kb on + strandat 182.562 kb on - strandat 182.573 kb on - strandat 182.629 kb on - strandat 182.629 kb on - strandat 182.629 kb on - strandat 182.677 kb on - strandat 182.682 kb on + strandat 182.682 kb on + strandat 182.682 kb on + strandat 182.683 kb on - strandat 182.683 kb on - strandat 182.685 kb on + strandat 182.686 kb on - strandat 182.706 kb on + strandat 182.707 kb on - strandat 182.707 kb on - strandat 182.707 kb on - strandat 182.736 kb on + strandat 182.793 kb on - strandat 182.818 kb on - strand, within EX28DRAFT_2877at 182.818 kb on - strand, within EX28DRAFT_2877at 182.823 kb on + strand, within EX28DRAFT_2877at 183.052 kb on - strand, within EX28DRAFT_2877at 183.160 kb on + strand, within EX28DRAFT_2877at 183.161 kb on - strand, within EX28DRAFT_2877at 183.161 kb on - strand, within EX28DRAFT_2877at 183.161 kb on - strand, within EX28DRAFT_2877at 183.210 kb on + strand, within EX28DRAFT_2877at 183.210 kb on + strand, within EX28DRAFT_2877at 183.210 kb on + strand, within EX28DRAFT_2877at 183.210 kb on + strand, within EX28DRAFT_2877at 183.211 kb on - strand, within EX28DRAFT_2877at 183.287 kb on - strand, within EX28DRAFT_2877at 183.369 kb on + strand, within EX28DRAFT_2877at 183.370 kb on - strand, within EX28DRAFT_2877at 183.426 kb on + strand, within EX28DRAFT_2877at 183.469 kb on + strand, within EX28DRAFT_2877at 183.470 kb on - strand, within EX28DRAFT_2877at 183.470 kb on - strand, within EX28DRAFT_2877at 183.480 kb on + strand, within EX28DRAFT_2877at 183.480 kb on + strand, within EX28DRAFT_2877at 183.553 kb on + strand, within EX28DRAFT_2877

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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180,893 + +0.2
180,893 + +0.6
180,893 + +0.4
180,894 - +0.1
180,919 - -0.1
180,952 - -0.4
180,952 - +0.1
181,063 - +0.5
181,099 - -0.1
181,213 + EX28DRAFT_2875 0.21 +0.4
181,264 + EX28DRAFT_2875 0.31 +0.3
181,355 - EX28DRAFT_2875 0.47 -1.4
181,401 + EX28DRAFT_2875 0.56 +0.3
181,495 + EX28DRAFT_2875 0.73 -1.1
181,501 - EX28DRAFT_2875 0.74 +0.4
181,520 - EX28DRAFT_2875 0.77 +0.6
181,535 + EX28DRAFT_2875 0.80 -0.2
181,612 + -2.5
181,683 + +0.2
181,683 + +0.3
181,684 - +0.2
181,689 + +1.1
181,689 + -1.5
181,689 + +0.1
181,690 - -0.3
181,705 - +1.8
181,887 - EX28DRAFT_2876 0.21 +0.2
181,887 - EX28DRAFT_2876 0.21 -0.4
181,887 - EX28DRAFT_2876 0.21 -1.3
181,952 + EX28DRAFT_2876 0.28 -1.7
181,953 - EX28DRAFT_2876 0.29 +0.7
181,987 + EX28DRAFT_2876 0.33 -1.6
181,988 - EX28DRAFT_2876 0.33 -0.6
182,065 - EX28DRAFT_2876 0.42 -0.1
182,187 - EX28DRAFT_2876 0.56 -0.1
182,411 - EX28DRAFT_2876 0.83 +0.7
182,469 - EX28DRAFT_2876 0.90 +0.3
182,555 + +0.2
182,558 - +0.2
182,561 + +0.8
182,562 - -0.1
182,573 - -1.5
182,629 - -0.2
182,629 - -0.9
182,629 - +0.0
182,677 - -0.2
182,682 + -0.7
182,682 + -0.3
182,682 + -0.4
182,683 - -0.1
182,683 - -1.3
182,685 + +0.7
182,686 - -0.1
182,706 + -0.9
182,707 - +0.7
182,707 - +0.7
182,707 - -0.8
182,736 + -1.9
182,793 - +0.3
182,818 - EX28DRAFT_2877 0.11 -0.3
182,818 - EX28DRAFT_2877 0.11 +0.2
182,823 + EX28DRAFT_2877 0.11 +0.1
183,052 - EX28DRAFT_2877 0.28 -0.3
183,160 + EX28DRAFT_2877 0.36 +0.1
183,161 - EX28DRAFT_2877 0.36 +0.4
183,161 - EX28DRAFT_2877 0.36 +1.7
183,161 - EX28DRAFT_2877 0.36 -2.5
183,210 + EX28DRAFT_2877 0.39 +1.1
183,210 + EX28DRAFT_2877 0.39 +0.2
183,210 + EX28DRAFT_2877 0.39 -0.1
183,210 + EX28DRAFT_2877 0.39 -0.0
183,211 - EX28DRAFT_2877 0.40 -0.0
183,287 - EX28DRAFT_2877 0.45 +0.2
183,369 + EX28DRAFT_2877 0.51 -0.8
183,370 - EX28DRAFT_2877 0.51 +3.2
183,426 + EX28DRAFT_2877 0.55 -0.8
183,469 + EX28DRAFT_2877 0.58 +1.2
183,470 - EX28DRAFT_2877 0.59 -0.3
183,470 - EX28DRAFT_2877 0.59 +0.4
183,480 + EX28DRAFT_2877 0.59 +0.4
183,480 + EX28DRAFT_2877 0.59 -2.2
183,553 + EX28DRAFT_2877 0.65 -0.3

Or see this region's nucleotide sequence