Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2806

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2805 and EX28DRAFT_2806 are separated by 214 nucleotidesEX28DRAFT_2806 and EX28DRAFT_2807 are separated by 18 nucleotides EX28DRAFT_2805: EX28DRAFT_2805 - Transcriptional regulators, at 108,614 to 109,627 _2805 EX28DRAFT_2806: EX28DRAFT_2806 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 109,842 to 111,293 _2806 EX28DRAFT_2807: EX28DRAFT_2807 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 111,312 to 112,736 _2807 Position (kb) 109 110 111 112Strain fitness (log2 ratio) -2 -1 0 1at 109.075 kb on + strand, within EX28DRAFT_2805at 109.258 kb on - strand, within EX28DRAFT_2805at 109.404 kb on + strand, within EX28DRAFT_2805at 109.404 kb on + strand, within EX28DRAFT_2805at 109.417 kb on - strand, within EX28DRAFT_2805at 109.426 kb on + strand, within EX28DRAFT_2805at 109.426 kb on + strand, within EX28DRAFT_2805at 109.427 kb on - strand, within EX28DRAFT_2805at 109.427 kb on - strand, within EX28DRAFT_2805at 109.549 kb on - strandat 109.549 kb on - strandat 109.628 kb on - strandat 109.630 kb on + strandat 109.630 kb on + strandat 109.631 kb on - strandat 109.631 kb on - strandat 109.631 kb on - strandat 109.663 kb on + strandat 110.137 kb on + strand, within EX28DRAFT_2806at 110.258 kb on - strand, within EX28DRAFT_2806at 110.491 kb on - strand, within EX28DRAFT_2806at 110.538 kb on + strand, within EX28DRAFT_2806at 110.538 kb on + strand, within EX28DRAFT_2806at 110.703 kb on + strand, within EX28DRAFT_2806at 110.703 kb on + strand, within EX28DRAFT_2806at 111.032 kb on + strand, within EX28DRAFT_2806at 111.291 kb on + strandat 111.413 kb on + strandat 111.414 kb on - strandat 111.531 kb on - strand, within EX28DRAFT_2807at 111.652 kb on - strand, within EX28DRAFT_2807at 111.765 kb on - strand, within EX28DRAFT_2807at 111.765 kb on - strand, within EX28DRAFT_2807at 111.931 kb on - strand, within EX28DRAFT_2807at 111.931 kb on - strand, within EX28DRAFT_2807at 112.039 kb on - strand, within EX28DRAFT_2807at 112.239 kb on + strand, within EX28DRAFT_2807at 112.239 kb on + strand, within EX28DRAFT_2807at 112.239 kb on + strand, within EX28DRAFT_2807

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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109,075 + EX28DRAFT_2805 0.45 -0.1
109,258 - EX28DRAFT_2805 0.64 -1.8
109,404 + EX28DRAFT_2805 0.78 +0.1
109,404 + EX28DRAFT_2805 0.78 -0.0
109,417 - EX28DRAFT_2805 0.79 +0.6
109,426 + EX28DRAFT_2805 0.80 +1.4
109,426 + EX28DRAFT_2805 0.80 -1.1
109,427 - EX28DRAFT_2805 0.80 -0.4
109,427 - EX28DRAFT_2805 0.80 +0.5
109,549 - -0.7
109,549 - -0.5
109,628 - -0.1
109,630 + -0.7
109,630 + -0.2
109,631 - -0.5
109,631 - -0.3
109,631 - -0.4
109,663 + -0.8
110,137 + EX28DRAFT_2806 0.20 -0.5
110,258 - EX28DRAFT_2806 0.29 -1.7
110,491 - EX28DRAFT_2806 0.45 -0.8
110,538 + EX28DRAFT_2806 0.48 -1.5
110,538 + EX28DRAFT_2806 0.48 +0.2
110,703 + EX28DRAFT_2806 0.59 -0.1
110,703 + EX28DRAFT_2806 0.59 -2.7
111,032 + EX28DRAFT_2806 0.82 -1.0
111,291 + +1.0
111,413 + +0.4
111,414 - +0.0
111,531 - EX28DRAFT_2807 0.15 -0.4
111,652 - EX28DRAFT_2807 0.24 -0.7
111,765 - EX28DRAFT_2807 0.32 +0.3
111,765 - EX28DRAFT_2807 0.32 +1.3
111,931 - EX28DRAFT_2807 0.43 +0.4
111,931 - EX28DRAFT_2807 0.43 +1.0
112,039 - EX28DRAFT_2807 0.51 -1.1
112,239 + EX28DRAFT_2807 0.65 +0.4
112,239 + EX28DRAFT_2807 0.65 +0.7
112,239 + EX28DRAFT_2807 0.65 -0.5

Or see this region's nucleotide sequence