Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2805 and EX28DRAFT_2806 are separated by 214 nucleotides EX28DRAFT_2806 and EX28DRAFT_2807 are separated by 18 nucleotides
EX28DRAFT_2805: EX28DRAFT_2805 - Transcriptional regulators, at 108,614 to 109,627
_2805
EX28DRAFT_2806: EX28DRAFT_2806 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 109,842 to 111,293
_2806
EX28DRAFT_2807: EX28DRAFT_2807 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 111,312 to 112,736
_2807
Position (kb)
109
110
111
112 Strain fitness (log2 ratio)
-2
-1
0
1 at 109.075 kb on + strand, within EX28DRAFT_2805 at 109.258 kb on - strand, within EX28DRAFT_2805 at 109.404 kb on + strand, within EX28DRAFT_2805 at 109.404 kb on + strand, within EX28DRAFT_2805 at 109.417 kb on - strand, within EX28DRAFT_2805 at 109.426 kb on + strand, within EX28DRAFT_2805 at 109.426 kb on + strand, within EX28DRAFT_2805 at 109.427 kb on - strand, within EX28DRAFT_2805 at 109.427 kb on - strand, within EX28DRAFT_2805 at 109.549 kb on - strand at 109.549 kb on - strand at 109.628 kb on - strand at 109.630 kb on + strand at 109.630 kb on + strand at 109.631 kb on - strand at 109.631 kb on - strand at 109.631 kb on - strand at 109.663 kb on + strand at 110.137 kb on + strand, within EX28DRAFT_2806 at 110.258 kb on - strand, within EX28DRAFT_2806 at 110.491 kb on - strand, within EX28DRAFT_2806 at 110.538 kb on + strand, within EX28DRAFT_2806 at 110.538 kb on + strand, within EX28DRAFT_2806 at 110.703 kb on + strand, within EX28DRAFT_2806 at 110.703 kb on + strand, within EX28DRAFT_2806 at 111.032 kb on + strand, within EX28DRAFT_2806 at 111.291 kb on + strand at 111.413 kb on + strand at 111.414 kb on - strand at 111.531 kb on - strand, within EX28DRAFT_2807 at 111.652 kb on - strand, within EX28DRAFT_2807 at 111.765 kb on - strand, within EX28DRAFT_2807 at 111.765 kb on - strand, within EX28DRAFT_2807 at 111.931 kb on - strand, within EX28DRAFT_2807 at 111.931 kb on - strand, within EX28DRAFT_2807 at 112.039 kb on - strand, within EX28DRAFT_2807 at 112.239 kb on + strand, within EX28DRAFT_2807 at 112.239 kb on + strand, within EX28DRAFT_2807 at 112.239 kb on + strand, within EX28DRAFT_2807
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 109,075 + EX28DRAFT_2805 0.45 -0.1 109,258 - EX28DRAFT_2805 0.64 -1.8 109,404 + EX28DRAFT_2805 0.78 +0.1 109,404 + EX28DRAFT_2805 0.78 -0.0 109,417 - EX28DRAFT_2805 0.79 +0.6 109,426 + EX28DRAFT_2805 0.80 +1.4 109,426 + EX28DRAFT_2805 0.80 -1.1 109,427 - EX28DRAFT_2805 0.80 -0.4 109,427 - EX28DRAFT_2805 0.80 +0.5 109,549 - -0.7 109,549 - -0.5 109,628 - -0.1 109,630 + -0.7 109,630 + -0.2 109,631 - -0.5 109,631 - -0.3 109,631 - -0.4 109,663 + -0.8 110,137 + EX28DRAFT_2806 0.20 -0.5 110,258 - EX28DRAFT_2806 0.29 -1.7 110,491 - EX28DRAFT_2806 0.45 -0.8 110,538 + EX28DRAFT_2806 0.48 -1.5 110,538 + EX28DRAFT_2806 0.48 +0.2 110,703 + EX28DRAFT_2806 0.59 -0.1 110,703 + EX28DRAFT_2806 0.59 -2.7 111,032 + EX28DRAFT_2806 0.82 -1.0 111,291 + +1.0 111,413 + +0.4 111,414 - +0.0 111,531 - EX28DRAFT_2807 0.15 -0.4 111,652 - EX28DRAFT_2807 0.24 -0.7 111,765 - EX28DRAFT_2807 0.32 +0.3 111,765 - EX28DRAFT_2807 0.32 +1.3 111,931 - EX28DRAFT_2807 0.43 +0.4 111,931 - EX28DRAFT_2807 0.43 +1.0 112,039 - EX28DRAFT_2807 0.51 -1.1 112,239 + EX28DRAFT_2807 0.65 +0.4 112,239 + EX28DRAFT_2807 0.65 +0.7 112,239 + EX28DRAFT_2807 0.65 -0.5
Or see this region's nucleotide sequence