Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2668 and EX28DRAFT_2669 are separated by 108 nucleotides EX28DRAFT_2669 and EX28DRAFT_2670 are separated by 51 nucleotides
EX28DRAFT_2668: EX28DRAFT_2668 - Acyl-CoA dehydrogenases, at 2,704,843 to 2,707,287
_2668
EX28DRAFT_2669: EX28DRAFT_2669 - Predicted amidohydrolase, at 2,707,396 to 2,708,166
_2669
EX28DRAFT_2670: EX28DRAFT_2670 - Gamma-glutamyltransferase, at 2,708,218 to 2,709,819
_2670
Position (kb)
2707
2708
2709 Strain fitness (log2 ratio)
-2
-1
0
1 at 2706.397 kb on + strand, within EX28DRAFT_2668 at 2706.397 kb on + strand, within EX28DRAFT_2668 at 2706.568 kb on + strand, within EX28DRAFT_2668 at 2706.569 kb on - strand, within EX28DRAFT_2668 at 2706.660 kb on + strand, within EX28DRAFT_2668 at 2707.072 kb on - strand at 2707.144 kb on - strand at 2707.149 kb on + strand at 2707.301 kb on + strand at 2707.301 kb on + strand at 2707.348 kb on + strand at 2707.349 kb on - strand at 2707.359 kb on - strand at 2707.359 kb on - strand at 2707.359 kb on - strand at 2707.416 kb on + strand at 2707.753 kb on + strand, within EX28DRAFT_2669 at 2707.753 kb on + strand, within EX28DRAFT_2669 at 2707.876 kb on + strand, within EX28DRAFT_2669 at 2707.876 kb on + strand, within EX28DRAFT_2669 at 2707.876 kb on + strand, within EX28DRAFT_2669 at 2707.877 kb on - strand, within EX28DRAFT_2669 at 2707.928 kb on + strand, within EX28DRAFT_2669 at 2707.954 kb on + strand, within EX28DRAFT_2669 at 2707.954 kb on + strand, within EX28DRAFT_2669 at 2707.955 kb on - strand, within EX28DRAFT_2669 at 2708.002 kb on + strand, within EX28DRAFT_2669 at 2708.212 kb on - strand at 2708.315 kb on + strand at 2708.377 kb on - strand at 2708.475 kb on + strand, within EX28DRAFT_2670 at 2708.476 kb on - strand, within EX28DRAFT_2670 at 2708.628 kb on + strand, within EX28DRAFT_2670 at 2708.628 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.765 kb on + strand, within EX28DRAFT_2670 at 2708.814 kb on + strand, within EX28DRAFT_2670 at 2708.850 kb on - strand, within EX28DRAFT_2670 at 2708.886 kb on + strand, within EX28DRAFT_2670 at 2708.906 kb on + strand, within EX28DRAFT_2670 at 2708.992 kb on - strand, within EX28DRAFT_2670 at 2709.098 kb on - strand, within EX28DRAFT_2670
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,706,397 + EX28DRAFT_2668 0.64 +0.5 2,706,397 + EX28DRAFT_2668 0.64 +0.6 2,706,568 + EX28DRAFT_2668 0.71 +0.3 2,706,569 - EX28DRAFT_2668 0.71 +0.8 2,706,660 + EX28DRAFT_2668 0.74 -2.2 2,707,072 - -0.4 2,707,144 - -0.3 2,707,149 + +0.8 2,707,301 + -0.9 2,707,301 + -1.2 2,707,348 + +1.5 2,707,349 - -0.3 2,707,359 - +0.3 2,707,359 - +0.8 2,707,359 - +1.6 2,707,416 + -1.2 2,707,753 + EX28DRAFT_2669 0.46 +0.9 2,707,753 + EX28DRAFT_2669 0.46 +0.1 2,707,876 + EX28DRAFT_2669 0.62 +0.1 2,707,876 + EX28DRAFT_2669 0.62 -1.2 2,707,876 + EX28DRAFT_2669 0.62 -0.4 2,707,877 - EX28DRAFT_2669 0.62 +0.5 2,707,928 + EX28DRAFT_2669 0.69 +0.0 2,707,954 + EX28DRAFT_2669 0.72 +0.1 2,707,954 + EX28DRAFT_2669 0.72 +0.5 2,707,955 - EX28DRAFT_2669 0.73 +0.0 2,708,002 + EX28DRAFT_2669 0.79 -0.0 2,708,212 - +0.4 2,708,315 + +0.0 2,708,377 - -0.2 2,708,475 + EX28DRAFT_2670 0.16 +1.5 2,708,476 - EX28DRAFT_2670 0.16 +0.7 2,708,628 + EX28DRAFT_2670 0.26 +0.0 2,708,628 + EX28DRAFT_2670 0.26 -1.0 2,708,711 + EX28DRAFT_2670 0.31 -0.0 2,708,711 + EX28DRAFT_2670 0.31 +0.2 2,708,711 + EX28DRAFT_2670 0.31 -0.0 2,708,711 + EX28DRAFT_2670 0.31 +0.1 2,708,711 + EX28DRAFT_2670 0.31 +1.6 2,708,711 + EX28DRAFT_2670 0.31 +0.8 2,708,712 - EX28DRAFT_2670 0.31 +0.0 2,708,712 - EX28DRAFT_2670 0.31 +0.4 2,708,712 - EX28DRAFT_2670 0.31 +0.3 2,708,712 - EX28DRAFT_2670 0.31 -0.5 2,708,712 - EX28DRAFT_2670 0.31 -0.5 2,708,712 - EX28DRAFT_2670 0.31 -0.9 2,708,712 - EX28DRAFT_2670 0.31 +0.2 2,708,712 - EX28DRAFT_2670 0.31 -0.4 2,708,712 - EX28DRAFT_2670 0.31 +0.5 2,708,765 + EX28DRAFT_2670 0.34 -0.0 2,708,814 + EX28DRAFT_2670 0.37 -0.1 2,708,850 - EX28DRAFT_2670 0.39 -0.9 2,708,886 + EX28DRAFT_2670 0.42 -0.2 2,708,906 + EX28DRAFT_2670 0.43 -1.4 2,708,992 - EX28DRAFT_2670 0.48 -0.4 2,709,098 - EX28DRAFT_2670 0.55 +0.4
Or see this region's nucleotide sequence